Utilization Pathway Research Articles

Pd/UiO‐66(Zr)‐2OH as a High‐Performance Catalyst for Hydrogen‐Enhanced Fenton Oxidation of Trimethoprim

ABSTRACTA novel catalyst material named Pd/UiO‐66(Zr)‐2OH was successfully developed and applied in a hydrogen‐promoted Fenton system for the efficient catalytic oxidation of the widely used antibiotic trimethoprim (TMP). The UiO‐66(Zr)‐2OH, as the carrier of catalyst in this work, was synthesized through a solvothermal method. The Pd0 nanoparticle, as the active center of the catalyst, was loaded onto its surface by the “ship‐in‐a‐bottle” strategy. The results showed that the composite Pd/UiO‐66(Zr)‐2OH demonstrated excellent catalytic performance during the reaction, achieving over 97% of TMP removal efficiency within 180 min under optimal conditions under the condition of only trace of iron without adding H2O2. This may be attributed to the fact that the [H], as a clean and efficient reducing agent, can be utilized to accelerate the regeneration of Fe2+ in the Fenton reaction, as well as in the in‐situ regeneration of H2O2. The key parameters affecting the removal efficiency of TMP, including the initial pH and concentration of Fe2+, the dosage of the synthesized material, the flow rate of H2 and the stirring speed were investigated systematically. The Pd/UiO‐66(Zr)‐2OH exhibited high stability and reusability, maintaining over 82% of its initial degradation efficiency of TMP after six reaction cycles. The mechanistic insight revealed that the system primarily relied on the generation of hydroxyl radical (·OH) and singlet oxygen (1O2) for the degradation of TMP, which was verified through quenching experiments and electron spin resonance (ESR). The degradation pathway of TMP was elucidated by analyzing intermediates and the reduction in total organic carbon (TOC). This research offers novel conceptual insights into the evolution and application of advanced oxidation technologies, efficient degradation of emerging pollutants, and expansion of pathways for hydrogen resource utilization.

Cobalt-modified digestate-derived biochar enhances kitchen waste anaerobic dry digestion: Performance, microbial mechanisms, and metabolic pathways

To achieve simultaneous in-situ high-value utilization of digestate and efficient resource recovery of kitchen waste (KW). In this work, Co-modified digestate-derived biochar (DDB-Co) was prepared for the first time, the effects of DDB-Co on KW mesophilic dry anaerobic digestion were investigated, and the underlying mechanisms were elucidated. The results showed that the specific surface area of DDB-Co increased to 98.7 m2/g, which was 37.4 % higher than that of the unmodified group (DDB). DDB-Co exhibited a dose-dependent effect on biogas production from the KW dry digestion, with the optimal dose of 4.0 g/L (calculated on a solid content) DDB-Co yielding 205.3 mL/(g·VS) of biogas, representing an 80.9 % increase compared to the CK group. However, higher doses, such as 8.0 g/L DDB-Co, reduced the cumulative biogas production. Mechanistic analysis indicated that 4.0 g/L DDB-Co facilitated the dissolution of particulate organic matter and accelerates the conversion process of volatile fatty acids (VFA) in KW, thereby preventing excessive acidification. Microbial community structure analysis revealed that DDB-Co reduced microbial richness and diversity but selectively enriched microorganisms such as Lactobacillus and Methanothrix, accelerating the direct interspecific electron transfer (DIET) reaction rate and increasing biogas production. Metagenomic analysis demonstrated that DDB-Co primarily upregulated the relative abundances of key enzymes in the acetate decarboxylation methanogenesis pathway, such as acetate kinase (ackA), phosphate acetyltransferase (pta), and acetyl-CoA synthetase (acs), enhancing biogas yield and maintaining system stability. The findings of this work expand the high-value utilization pathways for digestate and provide an alternative solution for the efficient resource recovery of KW.

Identification and characterization of a novel formaldehyde dehydrogenase in Bacillus subtilis.

Formaldehyde is a key metabolite in methanol assimilation for many methylotrophic microorganisms, and at the same time, it is toxic to all living cells, which means its intracellular concentrations must be tightly controlled. An in-depth understanding of methanol detoxification systems in industrially relevant microorganisms is a prerequisite for the introduction of methanol utilization pathways into their metabolism (synthetic methylotrophy). Bacillus subtilis, an industrial workhorse conventionally used for the production of enzymes, is known to possess two formaldehyde detoxification pathways. Here, we identify a novel formaldehyde dehydrogenase in this bacterium as a path towards creating innovative prospect strategies for strain engineering towards synthetic methylotrophy.

Engineering Escherichia coli via introduction of the isopentenol utilization pathway to effectively produce geranyllinalool

BackgroundGeranyllinalool, a natural diterpenoid found in plants, has a floral and woody aroma, making it valuable in flavors and fragrances. Currently, its synthesis primarily depends on chemical methods, which are environmentally harmful and economically unsustainable. Microbial synthesis through metabolic engineering has shown potential for producing geranyllinalool. However, achieving efficient synthesis remains challenging owing to the limited availability of terpenoid precursors in microorganisms. Thus, an artificial isopentenol utilization pathway (IUP) was constructed and introduced in Escherichia coli to enhance precursor availability and further improve terpenoid synthesis.ResultsWe first constructed an artificial IUP in E. coli to enhance the supply of precursor geranylgeranyl diphosphate (GGPP) and then screened geranyllinalool synthases from plants to achieve efficient synthesis of geranyllinalool (274.78 ± 2.48 mg/L). To further improve geranyllinalool synthesis, we optimized various cultivation factors, including carbon source, IPTG concentration, and prenol addition and obtained 447.51 ± 6.92 mg/L of geranyllinalool after 72 h of shaken flask fermentation. Moreover, a scaled-up production in a 5-L fermenter was investigated to give 2.06 g/L of geranyllinalool through fed-batch fermentation. To the best of our knowledge, this is the highest reported titer so far.ConclusionsEfficient synthesis of geranyllinalool in E. coli can be achieved through a two-step pathway and optimization of culture conditions. The findings of this study provide valuable insights into the production of other terpenoids in E. coli.

Carbon footprints of centralized and decentralized food waste utilization pathways

Food waste is usually utilized in centralized treatment facilities and is sometimes treated in decentralized facilities; however, the latter has not been evaluated systematically regarding carbon emissions. This study surveyed fifty-nine centralized and decentralized food waste treatment projects in Shenzhen, and incineration, anaerobic digestion, composting, and emerging technologies such as insect bioconversion and organic acid production were applied. Their carbon footprints were analyzed based on real data covering collection and transport, energy and material consumption, secondary pollutant control, and impurity disposal. The results showed that centralized facilities had a lower overall carbon footprint, although carbon emissions from their collection and transportation were higher. Anaerobic digestion performed best with an average carbon emission of −136.63 kg CO2-eq/t, followed by black soldier fly larvae cultivation (−12.86 kg CO2-eq/t), incineration (−11.02 kg CO2-eq/t), and organic acid production (−6.86 kg CO2-eq/t). All decentralized facilities were operated with net carbon emissions because they consumed a large amount of electricity or thermal heat without the full use of organic matter in the food waste. An optimal route was recommended by combining centralized anaerobic digestion and decentralized squeezing dewatering with adequate oil recovery, and this can make the overall carbon emission decrease from −6.72 kg CO2-eq/t to −17.75 kg CO2-eq/t. These results can provide decision-makers with guidance on food waste management to support net zero and sustainable development goal 12 and 13.

Second Life for Recycled Concrete and Other Construction and Demolition Waste in Mortars for Masonry: Full Scope of Material Properties, Performance, and Environmental Aspects

This review presents the scope of current efforts to utilize recycled construction and demolition waste in mortars for masonry. More than 100 articles are divided into groups pertaining to the type of mortar, different binder systems, the type of construction and demolition waste (CDW), and its utilization specifics. Cement-based mortars dominate this research domain, whereas recycled concrete is the main material employed to replace virgin aggregates, followed by recycled masonry and recycled mixed waste aggregates. Such application in cement-based mortars could increase water demand by 20–34% and reduce strength by 11–50%, with recycled concrete aggregates being the most favorable. Natural aggregate substitution is disadvantageous in strong mortars, whereas weaker ones, such as lime-based mortars, could benefit from this incorporation. The extent of this topic also suggests possibilities for different recycled material use cases in mortars for masonry, although the available literature is largely insufficient to infer meaningful trends. Nonetheless, the most relevant knowledge synthesized in this review offers promising and environment-conscious utilization pathways for recycled concrete and other construction and demolition waste, which brings opportunities for further research on their use in mortars for masonry and industrial-scale applications.

Conversion of Lignin to Nitrogenous Chemicals and Functional Materials.

Lignin has long been regarded as waste, readily separated and discarded from the pulp and paper industry. However, as the most abundant aromatic renewable biopolymer in nature, lignin can replace petroleum resources to prepare chemicals containing benzene rings. Therefore, the high-value transformation of lignin has attracted the interest of both academia and industry. Nitrogen-containing compounds and functionalized materials are a class of compounds that have wide applications in chemistry, materials science, energy storage, and other fields. Converting lignin into nitrogenous chemicals and materials is a high-value utilization pathway. Currently, there is a large amount of literature exploring the conversion of lignin. However, a comprehensive review of the transformation of lignin to nitrogenous compounds is lacking. The research progress of lignin conversion to nitrogenous chemicals and functional materials is reviewed in this article. This article provides an overview of the chemical structure and types of industrial lignin, methods of lignin modification, as well as nitrogen-containing chemicals and functional materials prepared from various types of lignin, including their applications in wastewater treatment, slow-release fertilizer, adhesive, coating, and biomedical fields. In addition, the challenges and limitations of nitrogenous lignin-based materials encountered during the development of applications are also discussed. It is believed that this review will act as a key reference and inspiration for researchers in the biomass and material field.

Valorization of water hyacinth: Efficient extraction of nanofibrillated crystals using ultrasound-assisted TEMPO oxidation and their application in flexible piezoelectric films

This study presents an efficient extraction of nanocellulose crystals (CNCs) and nanofibers (CNFs) through ultrasound-assisted TEMPO oxidation method using deep-processed heavy metal-containing calabash as raw material. The extraction method, integrating TEMPO-mediated oxidation and ultrasound techniques, enhanced the yield of CNCs and CNFs. The results demonstrate that CNCs yielded 63 %, with a carboxyl content of 1.27 mmol/g, while CNFs yielded 31 %, with a carboxyl content of 1.21 mmol/g. CNCs and CNFs exhibited excellent mechanical properties, with CNCs having an average length of 214.4 nm, average diameter of 2.72 nm, and a length-to-diameter ratio of 78.8. CNFs had an average length of 437.8 nm, average diameter of 5.7 nm, and a length-to-diameter ratio of 76.8. X-ray diffraction (XRD) results showed crystallinity of 87.1 % for CNCs and 81.2 % for CNFs. The thermal stability of the fibers was confirmed up to 230℃. The film prepared by combining 10 % PVA with 90 % CNC exhibited a tensile strength of 32.11 MPa, Young's modulus of 2027.1 MPa, and could generate a maximum voltage of 0.83 V. This study provides an effective pathway for the value-added utilization of deep-processed calabash and highlights the broad application prospects of the composite film in the field of flexible sensors.

Synergizing autothermal reforming hydrogen production and carbon dioxide electrolysis: Enhancing the competitiveness of blue hydrogen in sustainable energy systems

With the global energy paradigm shifting towards renewable and sustainable systems, hydrogen is increasingly recognized as a promising energy carrier. In this transition, blue hydrogen is often considered a bridge solution to green hydrogen due to its economic vulnerability to carbon costs and environmental regulations related to life-cycle emissions. To expand the role of blue hydrogen, it is essential to enhance hydrogen yield, reduce production costs, and minimize greenhouse gas emissions during the production phase. This study proposes an integrated process for blue hydrogen production and CO2 electrolysis to enhance the competitiveness of blue hydrogen in sustainable energy systems. The focus of this study was to integrate autothermal reforming hydrogen production with solid oxide CO2 electrolysis and to determine the optimal configuration and operating conditions of the integrated process. The proposed process demonstrated superior performance in terms of energy efficiency, production cost, and environmental impact compared with conventional blue hydrogen production. Furthermore, considering the intermittency of renewable electricity and the uncertainties in CO2 electrolysis technology, the industrial feasibility of the proposed process was validated. The integration of autothermal reforming blue hydrogen production and CO2 electrolysis has four clear advantages: (i) the costly air separation and carbon capture units, which pose significant financial burdens in autothermal reforming blue hydrogen production, can be eliminated; (ii) the downstream separation, which is indispensable in a standalone CO2 electrolysis system, can be removed; (iii) utilization pathways for captured CO2 from blue hydrogen production have been proposed; and (iv) guidelines have been provided for the industrial utilization of CO2 electrolysis.

Utilization Status of Oil-Based Drilling Cutting Pyrolysis Residues in The Field of Building Materials

The exploitation of shale gas generates a large amount of oil-based drill cuttings, which are harmful to the environment due to their content of petroleum hydrocarbons, heavy metals, and organic pollutants. Thermal desorption technology is one of the main techniques for treating oil-based drill cuttings. This paper focuses on oil-based drilling cutting pyrolysis residues and summarizes its current research status in the construction materials field. Currently, the application of oil-based drilling cutting pyrolysis residues has achieved certain results in road fill, cement production, ceramsite production, and wall materials, and further exploration and development are needed in the future to develop high value-added products and expand the pathways for the high-value utilization of oil residues.

Clostridioides difficile exploits xanthine and uric acid as nutrients by utilizing a selenium-dependent catabolic pathway.

Selenium is a trace element that plays critical roles in redox biology; it is typically incorporated into "selenoproteins" as the 21st amino acid selenocysteine. Additionally, selenium exists as a labile non-selenocysteine cofactor in a small subset of selenoproteins known as selenium-dependent molybdenum hydroxylases (SDMHs). In purinolytic clostridia, SDMHs are implicated in the degradation of hypoxanthine, xanthine, and uric acid for carbon and nitrogen. While SDMHs have been biochemically analyzed, the genes responsible for the insertion and maturation of the selenium cofactor lack characterization. In this study, we utilized the nosocomial pathogen Clostridioides difficile as a genetic model to begin characterizing this poorly understood selenium utilization pathway and its role in the catabolism of host-derived purines. We first observed that C. difficile could utilize hypoxanthine, xanthine, or uric acid to overcome a growth defect in a minimal medium devoid of glycine and threonine. However, strains lacking selenophosphate synthetase (selD mutants) still grew poorly in the presence of xanthine and uric acid, suggesting a selenium-dependent purinolytic process. Previous computational studies have identified yqeB and yqeC as potential candidates for cofactor maturation, so we subsequently deleted each gene using CRISPR-Cas9 technology. We surprisingly found that the growth of the ΔyqeB mutant in response to each purine was similar to the behavior of the selD mutants, while the ΔyqeC mutant exhibited no obvious phenotype. Our results suggest an important role for YqeB in selenium-dependent purine catabolism and also showcase C. difficile as an appropriate model organism to study the biological use of selenium.IMPORTANCEThe apparent modification of bacterial molybdenum hydroxylases with a catalytically essential selenium cofactor is the least understood mechanism of selenium incorporation. Selenium-dependent molybdenum hydroxylases play an important role in scavenging carbon and nitrogen from purines for purinolytic clostridia. Here, we used Clostridioides difficile as a genetic platform to begin dissecting the selenium cofactor trait and found genetic evidence for a selenium-dependent purinolytic pathway. The absence of selD or yqeB-a predicted genetic marker for the selenium cofactor trait-resulted in impaired growth on xanthine and uric acid, known substrates for selenium-dependent molybdenum hydroxylases. Our findings provide a genetic foundation for future research of this pathway and suggest a novel metabolic strategy for C. difficile to scavenge host-derived purines from the gut.

Extraction and Characterization of Cellulose from Kelp (Laminaria japonica) Residue

Abstract Kelp residue is the byproduct of industrial production of sodium alginate from kelp. An in-depth utilization of kelp residue not only creates higher economic value but also opens up a new pathway for comprehensive utilization of kelp. In this study, a method of first removing acid-soluble ash and then depleting protein was employed to extract cellulose components from kelp residue. Single-factor experiments demonstrated that treating kelp residue with 1.2 mol/L hydrochloric acid at a solid-liquid ratio of 1:5 effectively removed acid-soluble ash. Subsequently, further treatment with 3% NaOH at a solid-liquid ratio of 1:10, conducted at 100 °C for 140 minutes, reduced the protein content in the extract to below 1%, with a cellulose yield of 33.5%. Fourier transform infrared spectroscopy analysis revealed that characteristic peaks attributed to cellulose existed in the extractive, while electron microscopy observations indicated that the extracted kelp residue cellulose exhibited irregular thin-sheet structures. The cellulose obtained in this study lays the foundation for its further utilization and processing into cellulose-derived products.

CCUS: A Panacea or a Placebo in the fight against climate change?

Carbon Capture, Utilization, and Storage (CCUS) is a crucial technology for achieving carbon neutrality, but it faces significant challenges. Despite substantial investments and policy support, CCUS projects have underperformed due to technical difficulties, high costs, and controversies surrounding the fossil fuel industry's involvement. The effectiveness and feasibility of CCUS in reducing carbon emissions remain uncertain. This viewpoint provides a comprehensive analysis of the current state of CCUS technology, examining its potential to reduce carbon emissions, the challenges hindering its deployment, and the strategies needed to overcome these barriers. We discuss the need for a combinatorial approach to unlock CCUS's full potential, and also emphasize the importance of selecting optimal CO₂ utilization pathways to maximize economic benefits and CO₂ absorption. Although CCUS faces technical, economic, and social barriers, it can still play a valuable role in mitigating emissions from hard-to-abate sectors when supported by comprehensive strategies and collaborative efforts among governments, industries, and research institutions. By addressing these challenges and investing in innovation, CCUS can contribute to achieving carbon neutrality and building a sustainable, low-carbon future.

Triazole-Based Thiamine Analogues as Inhibitors of Thiamine Pyrophosphate-Dependent Enzymes: 1,3-Dicarboxylate for Metal Binding.

Thiamine 1 (vitamin B1) is essential for energy metabolism, and interruption of its utilization pathways is linked to various disease states. Thiamine pyrophosphate 2a (TPP, the bioactive form of 1) functions as a coenzyme of a variety of enzymes. To understand the role of vitamin B1 in these diseases, a chemical approach is to use coenzyme analogues to compete with TPP for the enzyme active site, which abolishes the coenzyme function. Exemplified by oxythiamine 3a and triazole hydroxamate 4, chemical probes require the coenzyme analogues to be membrane-permeable and of broad inhibitory activity to the enzyme family (rather than being too selective to particular TPP-dependent enzymes). In this study, using biochemical assays, we show that changing the hydroxamate metal-binding group of 4 to a 1,3-dicarboxylate moiety leads to the potent inhibition of multiple TPP-dependent enzymes. We further demonstrate that this dianionic thiamine analogue when masked in its diester form becomes membrane-permeable and can be unmasked by esterase treatment. Taken together, our inhibitors are potentially useful chemical tools to study the roles of vitamin B1, using a prodrug mechanism, to induce the effects of thiamine deficiency in cell-based assays.

High-value multilayer graphene oxide prepared by catalytic pyrolysis of petroleum tar and applications: Trash to treasure

Petroleum tar (PT), a by-product of heavy oil refining, poses significant environmental challenges due to its high production volume and associated pollution risks. This study presents an innovative approach for the catalytic conversion of PT into multilayer graphene oxide using nickel foam (NiF) as a catalyst at reaction temperatures of 500 °C and 700 °C (GT/Ni500 and GT/Ni700). The process effectively decomposes PT and facilitates the structured rearrangement of carbon atoms into graphene layers. Comprehensive characterization techniques, including SEM-EDS, HRTEM, BET, XRD, XPS, and Raman spectroscopy, confirm the formation of high-quality graphene oxide. The synthesized GT/Ni700 material exhibits remarkable electrochemical performance with a specific capacitance of 3.34F/g. GT/Ni500 shows adsorption capacities of 59.86 mg/g for Pb2+ and 56.84 mg/g for Cu2+. Life Cycle Assessment reveals a substantial reduction in the carbon footprint, with CO2 equivalents for GT/Ni500 and GT/Ni700significantly lower than traditional methods, at 17.64 kg/CO2eq and 14.03 kg/CO2eq, respectively, representing a reduction of over 50 %. This study not only offers a sustainable pathway for PT utilization but also provides advanced materials with dual utility in electrochemical applications and heavy metal adsorption, contributing to environmental remediation and reducing reliance on non-renewable resources.

Enhancing medium-chain fatty acids production via alkyl polyglucose modulation of electron acceptor generation, microbial community and metabolic traits in anaerobic fermentation of waste activated sludge

Production of medium chain fatty acids (MCFAs) through anaerobic fermentation is an essential pathway for efficient resource recovery and utilization of waste activated sludge (WAS). In this study, a novel strategy utilizing polyglucose (APG) to enhance MCFAs production from WAS by anaerobic fermentation was proposed. The results showed that the maximum MCFAs production reached 14745.0 mg COD/L with 0.3 g APG/g TSS, which was 20.2 times of that without APG treatment. The transformation of intermediates demonstrated that APG promoted the generation of electron acceptors (i.e., short-chain fatty acids) and conversion of substrate to MCFAs. Microbial community analysis indicated that APG selectively enriched microbe involved in hydrolysis, acidogenesis and chain elongation (CE). Also, the presence of APG had a negative impact on methanogens and potential excessive ethanol oxidation (EEO) microbe, which were competitors of CE bacteria in mixed-culture system. Metagenomic analysis showed an increase in relative abundance of genes encoding metabolic functions responsible for hydrolysis, acidogenesis, CE and energy generation, thus maintained high microbial activity in MCFAs biosynthesis. These enhanced metabolic functions were accompanied by a reduction in relative abundance of genes encoding methanogenesis and EEO metabolism, which together result in boosting the efficiency of substrate and energy flow to MCFAs production. This study presents a promising approach to improve the biotransformation of polysaccharides and proteins from WAS into MCFAs.

A Proteomic Study on Seed Germination of Nitraria roborowskii Kom.

Owing to the dormancy of the seeds of Nitraria roborowskii Kom., which results in a low germination rate in nature, germination takes a long time, and natural regeneration is difficult. Therefore, there is a need to study the molecular mechanism by which the seeds of N. roborowskii release dormancy. In this study, the differentially expressed proteins of N. roborowskii seeds before and after dormancy and germination were quantitatively and qualitatively analyzed via two-dimensional high-performance liquid chromatography tandem mass spectrometry (LC–MS) and TMTTM. Differentially expressed proteins from dormant and germinated seeds were characterized and enriched via bioinformatics to determine the functions and pathways of the differentially expressed proteins. The results revealed that seed dormancy was regulated by multiple metabolic pathways, including protein synthesis, nutrient utilization and phytohormone signal transduction pathways. A comparison of the dormant and germinated N. roborowskii seed samples revealed 1082 differentially expressed proteins with FC ≥ 1.5 and p values ≤ 0.05, among which 191 proteins were upregulated and 891 proteins were downregulated in the seeds of the germinated group, and proteins more closely related to the key genes of the germinated N. roborowskii seeds were involved in the activity of D-threo-aldose 1-dehydrogenase. Four proteins (WD40, cystatin, AMP binding protein, and helicase) were involved in the positive regulation of seed germination. The release of N. roborowskii seed dormancy is a complex biological process involving cell differentiation, formation, cellular transport, signaling and resistance, etc. The interactions of multiple metabolic pathways, such as carbon fixation, glycolysis/gluconeogenesis, the pentose phosphate pathway, endoplasmic reticulum protein processing and pyruvic acid metabolism in photosynthetic organisms, constitute a complex regulatory mechanism for dormancy release.

Defining metabolic flexibility in hair follicle stem cell induced squamous cell carcinoma.

We previously showed that inhibition of glycolysis in cutaneous squamous cell carcinoma (SCC)-initiating cells had no effect on tumorigenesis, despite the perceived requirement of the Warburg effect, which was thought to drive carcinogenesis. Instead, these SCCs were metabolically flexible and sustained growth through glutaminolysis, another metabolic process frequently implicated to fuel tumorigenesis in various cancers. Here, we focused on glutaminolysis and genetically blocked this process through glutaminase (GLS) deletion in SCC cells of origin. Genetic deletion of GLS had little effect on tumorigenesis due to the up-regulated lactate consumption and utilization for the TCA cycle, providing further evidence of metabolic flexibility. We went on to show that posttranscriptional regulation of nutrient transporters appears to mediate metabolic flexibility in this SCC model. To define the limits of this flexibility, we genetically blocked both glycolysis and glutaminolysis simultaneously and found the abrogation of both of these carbon utilization pathways was enough to prevent both papilloma and frank carcinoma.

Segmentation Synergy with a Dual U-Net and Federated Learning with CNNRF Models for Enhanced Brain Tumor Analysis

Background: Brain tumours represent a diagnostic challenge, especially in the imaging area, where the differentiation of normal and pathologic tissues should be precise. The use of up-to-date machine learning techniques would be of great help in terms of brain tumor identification accuracy from MRI data. Objective: This research paper aims to check the efficiency of a federated learning method that joins two classifiers, such as convolutional neural networks (CNNs) and random forests (R.F.F.), with dual U-Net segmentation for federated learning. This procedure benefits the image identification task on preprocessed MRI scan pictures that have already been categorized. Methods: In addition to using a variety of datasets, federated learning was utilized to train the CNN-RF model while taking data privacy into account. The processed MRI images with Median, Gaussian, and Wiener filters are used to filter out the noise level and make the feature extraction process easy and efficient. The surgical part used a dual U-Net layout, and the performance assessment was based on precision, recall, F1-score, and accuracy. Results: The model achieved excellent classification performance on local datasets as CRPs were high, from 91.28% to 95.52% for macro, micro, and weighted averages. Throughout the process of federated averaging, the collective model outperformed by reaching 97% accuracy compared to those of 99%, which were subjected to different clients. The correctness of how data is used helps the federated averaging method convert individual model insights into a consistent global model while keeping all personal data private. Conclusion: The combined structure of the federated learning framework, CNN-RF hybrid model, and dual U-Net segmentation is a robust and privacypreserving approach for identifying MRI images from brain tumors. The results of the present study exhibited that the technique is promising in improving the quality of brain tumor categorization and provides a pathway for practical utilization in clinical settings.

Inherent metabolic preferences differentially regulate the sensitivity of Th1 and Th2 cells to ribosome-inhibiting antibiotics.

Mitochondrial translation is essential to maintain mitochondrial function and energy production. Mutations in genes associated with mitochondrial translation cause several developmental disorders, and immune dysfunction is observed in many such patients. Besides genetic mutations, several antibiotics targeting bacterial ribosomes are well-established to inhibit mitochondrial translation. However, the effect of such antibiotics on different immune cells is not fully understood. Here, we addressed the differential effect of mitochondrial translation inhibition on different subsets of helper T cells (Th) of mice and humans. Inhibition of mitochondrial translation reduced the levels of mitochondrially encoded electron transport chain subunits without affecting their nuclear-encoded counterparts. As a result, mitochondrial oxygen consumption reduced dramatically, but mitochondrial mass was unaffected. Most importantly, we show that inhibition of mitochondrial translation induced apoptosis, specifically in Th2 cells. This increase in apoptosis was associated with higher expression of Bim and Puma, two activators of the intrinsic pathway of apoptosis. We propose that this difference in the sensitivity of Th1 and Th2 cells to mitochondrial translation inhibition reflects the intrinsic metabolic demands of these subtypes. Though Th1 and Th2 cells exhibit similar levels of oxidative phosphorylation, Th1 cells exhibit higher levels of aerobic glycolysis than Th2 cells. Moreover, Th1 cells are more sensitive to the inhibition of glycolysis, while higher concentrations of glycolysis inhibitor 2-deoxyglucose are required to induce cell death in the Th2 lineage. These observations reveal that selection of metabolic pathways for substrate utilization during differentiation of Th1 and Th2 lineages is a fundamental process conserved across species.