Soil Organic Carbon Cycling Research Articles

Elucidating the impact of mulching film on organic carbon mineralization from the perspective of aggregate level.

Plastic films mulching, a management strategy designed to boost agricultural productivity, significantly impacts soil fertility and the turnover of soil organic carbon (SOC). Aggregates in the soil play a crucial role in this SOC cycling. Yet, the effect of mulching on the changes in organic carbon components and the mineralization at the aggregate scale is still not well understood. We conducted a three-year field experiment to examine the effects of various mulching types (CK: non-mulching, BPM: black polyethylene mulching, CPM: colorless polyethylene mulching, BDM: black degradable mulching, CDM: colorless degradable mulching) on the transformation and mineralization of organic carbon within soil aggregates. Generally, after three years of continuous mulching, compared to CK, soil aggregate stability significantly improved, the content of SOC and HFOC increased by 8-14% and 12-24% respectively, while the content of LFOC decreased by 3-51%. The response mechanisms of organic carbon mineralization in different size aggregates to mulching are different. The change in carbon components is the main factor stimulating the mineralization of organic carbon in >0.25mm aggregates; microbial diversity is the dominant factor inhibiting the mineralization of organic carbon in 0.053-0.25mm aggregates; while <0.053mm aggregates are not significantly affected by mulching. Our findings suggest that plastic mulching reduce the mineralization of SOC and enhances its sequestration by modulating the composition of organic carbon fractions, extracellular enzymes, and microorganisms within soil aggregates of different sizes. This study provides a valuable reference for gaining further insights into the turnover dynamics of soil organic carbon at the aggregate scale.

Mycorrhiza‐dependent drivers of the positive rhizosphere effects on the temperature sensitivity of soil microbial respiration in subtropical forests

Abstract Tree roots and their fungal symbionts mediate the response of rhizosphere soil organic carbon (SOC) decomposition to climate warming, specifically the temperature sensitivity of soil microbial respiration (Q10), which is a critical parameter for projecting the magnitude of terrestrial soil C‐climate feedbacks. However, the intensity of the rhizosphere effects (RE; rhizosphere soils vs. bulk soils) on Q10 in forest soils associated with different mycorrhizal groups and their seasonal dynamics are poorly understood. Here, we selected nine tree species associated with either arbuscular mycorrhizal (AM) or ectomycorrhizal (EM) fungi in subtropical forests of China and collected bulk soil and rhizosphere soil in both the warm and cold seasons to explore the RE on Q10, respectively. Our results showed a positive RE on Q10 (ranging from 20.1% to 87.5%) for all tree species, independent of the season. For EM tree species, the RE on Q10 was 64.5% higher in the warm season and 44.4% higher in the cold season, compared with AM tree species. The RE on Q10 of AM and EM tree species was 44.8% and 65.0% larger in the warm season than that in the cold season, respectively. Fine root traits (including biomass, the carbon‐to‐nitrogen ratio, and soluble sugar content) predominantly controlled the RE on Q10 in AM‐dominated forests, whereas the RE on soil properties (such as and C availability) dominantly governed the RE on Q10 in EM‐dominated forests. Furthermore, the RE on Q10 was also positively correlated with the RE on soil microbial phospholipid fatty acids in both AM‐ and EM‐dominated forests. These findings suggest that rhizosphere soils in EM‐dominated forests are more susceptible to C losses under climate warming than those in AM‐dominated forests, compared with their respective bulk soils, potentially limiting rhizosphere SOC sequestration. The greater vulnerability of EM‐dominated forests underscores the importance of accounting for root–soil interactions, mycorrhizal associations, and seasonal dynamics in C‐climate models to improve predictions of SOC cycling and its feedback to global warming. Read the free Plain Language Summary for this article on the Journal blog.

Lifting the Profile of Deep Forest Soil Carbon

Forests are the reservoir for a vast amount of terrestrial soil organic carbon (SOC) globally. With increasing soil depth, the age of SOC reportedly increases, implying resistance to change. However, we know little about the processes that underpin deep SOC persistence and what deep SOC is vulnerable to climate change. This review summarizes the current knowledge of deep forest SOC, the processes regulating its cycling, and the impacts of climate change on the fate of deep forest SOC. Our understanding of the processes that influence deep SOC cycling and the extent of SOC stores is limited by available data. Accordingly, there is a large degree of uncertainty surrounding how much deep SOC there is, our understanding of the influencing factors of deep SOC cycling, and how these may be distinct from upper soil layers. To improve our ability to predict deep SOC change, we need to more accurately quantify the deep SOC pool and deepen our knowledge of how factors related to the tree root–soil–microbiome control deep SOC storage and cycling. Thereby, addressing the uncertainty of deep SOC contribution in the global C exchange with climate change and concomitant impacts on forest ecosystem function and resilience.

Effects of LDPE and PBAT plastics on soil organic carbon and carbon-enzymes: A mesocosm experiment under field conditions

Although the effects of plastic residues on soil organic carbon (SOC) have been studied, variations in SOC and soil carbon-enzyme activities at different plant growth stages have been largely overlooked. There remains a knowledge gap on how various varieties of plastics affect SOC and carbon-enzyme activity dynamics during the different growing stages of plants. In this study, we conducted a mesocosm experiment under field conditions using low-density polyethylene and poly (butylene adipate-co-terephthalate) debris (LDPE-D and PBAT-D, 500–2000 μm (pieces), 0%, 0.05%, 0.1%, 0.2%, 0.5%, 1%, 2%), and low-density polyethylene microplastics (LDPE-M, 500–1000 μm (powder), 0%, 0.05%, 0.1%, 0.5%) to investigate SOC and C-enzyme activities (β-xylosidase, cellobiohydrolase, β-glucosidase) at the sowing, seedling, flowering and harvesting stages of soybean (Glycine Max). The results showed that SOC in the LDPE-D treatments significantly increased from the flowering to harvesting stage, by 12.69%–13.26% (p < 0.05), but significantly decreased in the 0.05% and 0.1% LDPE-M treatments from the sowing to seedling stage (p < 0.05). However, PBAT-D had no significant effect on SOC during the whole growing period. For C-enzyme activities, only LDPE-D treatments inhibited GH (17.22–38.56%), BG (46.7–66.53%) and CBH (13.19–23.16%), compared to treatment without plastic addition, from the flowering stage to harvesting stage. Meanwhile, C-enzyme activities and SOC responded nonmonotonically to plastic abundance and the impacts significantly varied among the growing stages, especially in treatments with PBAT-D (p < 0.05). These risks to soil organic carbon cycling are likely mediated by the effects of plastic contamination and degradation soil microbe. These effects are sensitive to plastic characteristics such as type, size, and shape, which, in turn, affect the biogeochemical and mechanical interactions involving plastic particles. Therefore, further research on the interactions between plastic degradation processes and the soil microbial community may provide better mechanistic understanding the effect of plastic contamination on soil organic carbon cycling.

Environment and microbiome drive different microbial traits and functions in the macroscale soil organic carbon cycle.

Soil microbial traits and functions play a central role in soil organic carbon (SOC) dynamics. However, at the macroscale (regional to global) it is still unresolved whether (i) specific environmental attributes (e.g., climate, geology, soil types) or (ii) microbial community composition drive key microbial traits and functions directly. To address this knowledge gap, we used 33 grassland topsoils (0-10 cm) from a geoclimatic gradient in Chile. First, we incubated the soils for 1 week in favorable standardized conditions and quantified a wide range of soil microbial traits and functions such as microbial biomass carbon (MBC), enzyme kinetics, microbial respiration, growth rates as well as carbon use efficiency (CUE). Second, we characterized climatic and physicochemical properties as well as bacterial and fungal community composition of the soils. We then applied regression analysis to investigate how strongly the measured microbial traits and functions were linked with the environmental setting versus microbial community composition. We show that environmental attributes (predominantly the amount of soil organic matter) determined patterns of MBC along the gradient, which in turn explained microbial respiration and growth rates. However, respiration and growth normalized for MBC (i.e., specific respiration and growth) were more linked to microbial community composition than environmental attributes. Notably, both specific respiration and growth followed distinct trends and were related to different parts of the microbial community, which in turn resulted in strong effects on microbial CUE. We conclude that even at the macroscale, CUE is the result of physiologically decoupled aspects of microbial metabolism, which in turn is partially determined by microbial community composition. The environmental setting and microbial community composition affect different microbial traits and functions, and therefore both factors need to be considered in the context of macroscale SOC dynamics.

When and why microbial-explicit soil organic carbon models can be unstable

Abstract. Microbial-explicit soil organic carbon (SOC) cycling models are increasingly being recognized for their advantages over linear models in describing SOC dynamics. These models are known to exhibit oscillations, but it is not clear when they yield stable vs. unstable equilibrium points (EPs) – i.e., EPs that exist analytically but are not stable in relation to small perturbations and cannot be reached by transient simulations. The occurrence of such unstable EPs can lead to unexpected model behavior in transient simulations or unrealistic predictions of steady-state soil organic carbon (SOC) stocks. Here, we ask when and why unstable EPs can occur in an archetypal microbial-explicit model (representing SOC, dissolved OC (DOC), microbial biomass, and extracellular enzymes) and some simplified versions of it. Further, if a model formulation allows for physically meaningful but unstable EPs, can we find constraints in the model parameters (i.e., environmental conditions and microbial traits) that ensure stability of the EPs? We use analytical, numerical, and descriptive tools to answer these questions. We found that instability can occur when the resupply of a growth substrate (DOC) is (via a positive feedback loop) dependent on its abundance. We identified a conservative, sufficient condition in terms of model parameters to ensure the stability of EPs. Principally, three distinct strategies can avoid instability: (1) neglecting explicit DOC dynamics, (2) biomass-independent uptake rate, or (3) correlation between parameter values to obey the stability criterion. While the first two approaches simplify some mechanistic processes, the third approach points to the interactive effects of environmental conditions and parameters describing microbial physiology, highlighting the relevance of basic ecological principles for the avoidance of unrealistic (i.e., unstable) simulation outcomes. These insights can help to improve the applicability of microbial-explicit models, aid our understanding of the dynamics of these models, and highlight the relation between mathematical requirements and (in silico) microbial ecology.

Radiocarbon evidence of organic carbon turnover response to grassland grazing: A soil aggregate fraction perspective

Grassland grazing, driven human activities, represents a prevalent form of land use conversion. While numerous studies have examined the impact of such conversions on soil carbon cycling, they primarily focus on the content and storage of soil organic carbon (SOC). However, research on the turnover dynamics of SOC and the underlying mechanisms triggered by land use conversions remains relatively scarce. In this study, radiocarbon (14C) tracing technology was applied to investigate the effects of grassland grazing on SOC turnover in the Saihanba area of Hebei province, China. The results revealed that the turnover time of SOC in pasture grassland was shortened by approximately 250 years compared to meadow grassland, suggesting that grazing diminishes the ability of topsoil to stabilize SOC. Furthermore, our findings indicate that grazing leads to a decrease in soil CO2 flux by 0.50 g C m−2 y−1 under aggregates larger than 250 μm and those between 63 and 250 μm. Conversely, the CO2 flux under aggregates, specifically those between 2 and 63 μm and less than 2 μm, increased by 0.96 g C m−2 y−1. This shift suggests a significant increase in the contribution of older SOC pools to the overall soil CO2 flux. Our study provides novel insights into SOC cycling in the context of grassland grazing, highlighting the importance of understanding SOC turnover dynamics for effective land management.

Characterization and evaluation of actinomycete from the Protaetia brevitarsis Larva Frass.

Protaetia brevitarsis larvae (PBL) are soil insects important for the soil organic carbon cycle, and PBL frass not only contains a large amount of humic acid but also affects the diversity, novelty, and potential functions of actinomycetes. Here, we characterized and assessed the actinomycete. The operational taxonomic unit (OTU) data showed that 90% of the actinomycetes cannot be annotated to species, and pure culture and genome analysis showed that 35% of the strains had the potential to be new species, indicating the novelty of PBL frass actinomycetes. Additionally, genome annotation showed that many gene clusters related to antifungal, antibacterial and insecticidal compound synthesis were identified, and confrontation culture confirmed the antifungal activities of the actinomycetes against soil-borne plant pathogenic fungi. The incubation experiment results showed that all isolates were able to thrive on media composed of straw powder and alkaline lignin. These results indicated that PBL hindgut-enriched actinomycetes could survive in soil by using the residual lignocellulose organic matter from plant residues, and the antibiotics produced not only give them a competitive advantage among soil microflora but also have a certain inhibitory effect on plant diseases and pests. This study suggests that the application of PBL frass can not only supplement soil humic acid but also potentially affect the soil microbiota of cultivated land, which is beneficial for the healthy growth of crops.

Filtration of Grey Water Using Herbs in a Columnar Evaluation

Filtration of Grey Water Using Herbs in a Columnar Evaluation

Microbiological impact of long-term wine grape cultivation on soil organic carbon in desert ecosystems: a study on rhizosphere and bulk sandy soils.

The improvement of nutrients in soil is essential for using deserts and decertified ecosystems and promoting sustainable agriculture. Grapevines are suitable crops for desert soils as they can adapt to harsh environments and effectively impact soil nutrients; however, the mechanisms underlying this remain unclear. This study explored the impact of the different duration(3, 6, and 10 years) of grape cultivation on soil organic carbon, physicochemical properties, enzyme activities, microbial communities, and carbon cycle pathways in both rhizosphere and bulk soils. Partial least squares path modeling was used to further reveal how these factors contributed to soil nutrient improvement. Our findings indicate that after long-term grape cultivation six years, soil organic carbon, total nitrogen, total phosphorus, microbial biomass carbon and nitrogen, and enzyme activities has significantly increased in both rhizosphere and bulk soils but microbial diversity decreased in bulk soil. According to the microbial community assembly analysis, we found that stochastic processes, particularly homogenizing dispersal, were dominant in both soils. Bacteria are more sensitive to environmental changes than fungi. In the bulk soil, long-term grape cultivation leads to a reduction in ecological niches and an increase in salinity, resulting in a decrease in soil microbial diversity. Soil enzymes play an important role in increasing soil organic matter in bulk soil by decomposing plant litters, while fungi play an important role in increasing soil organic matter in the rhizosphere, possibly by decomposing fine roots and producing mycelia. Our findings enhance understanding of the mechanisms of soil organic carbon improvement under long-term grape cultivation and suggest that grapes are suitable crops for restoring desert ecosystems.

Urbanization-induced soil organic carbon loss and microbial-enzymatic drivers: insights from aggregate size classes in Nanchang city, China.

Soil microorganisms and enzymes play crucial roles in soil organic carbon (SOC) sequestration by promoting soil aggregate formation and stability and by participating in SOC cycling and accumulation. However, the effects by which soil microorganisms and enzymes act as mediators driving dynamic changes in SOC during rapid urbanization remain unclear. Therefore, this study selected the built-up area of Nanchang City, China (505 km2), as the study area. Sampling surveys were conducted using 184 sample plots stratified based on the proportion of impermeable surface area to distinguish different urbanization levels. The driving factors of dynamic changes in SOC of different aggregates during the process of urbanization were analyzed using the soil microbial community and enzyme activities. The results demonstrated that with an increase in urbanization intensity, both SOC content and stock exhibited a significant decline (p < 0.05). The highest SOC stock and contribution rate were observed in the 0.25-1 mm aggregates, and they were significantly influenced by urbanization (p < 0.05). In addition, the biomass of gram-positive bacteria (G+) and actinomycetota, and the activities of N-acetylglucosaminidase and acid phosphatase (AP) were significantly higher in low-urbanization areas than in high-urbanization areas (p < 0.05). SOC of each aggregate was positively correlated with fungi, arbuscular mycorrhizal fungi, G+, gram-negative bacteria, actinomycetota, protozoa, β-1,4-glucosidase, N-acetylglucosaminidase, AP, urease, and catalase. Compared to soil enzymes, soil microorganisms exhibited a greater role in SOC sequestration (22.7%). Additionally, a structural equation model indicated that urbanization can directly or indirectly lead to a decrease in SOC of aggregates by altering soil physicochemical properties and affecting microbial and enzyme dynamics. However, the larger vegetation characteristics index mitigate the negative impacts of urbanization on SOC. Overall, urbanization had a negative impact on soil carbon storage. In the future, it is important to consider strategies that focus on improving soil nutrients, maintaining soil structure, protecting existing urban trees, and enhancing plant diversity during the urbanization process. These measures can help increase soil microbial biomass and enzyme activity, thereby improving soil and aggregate-related SOC content. The study could contribute to enhancing carbon sequestration in urban greenspaces.

Fate of low molecular weight organics in paddy vs. upland soil: A microbial biomarker approach

Low-molecular-weight organic carbon (LMWOC) from root exudate influences soil organic carbon cycling via priming of microbial activity. However, the mechanisms underlying the uptake and utilization of specific exudates by microorganisms in soils remain unclear. To address this gap in knowledge, a one-month 13C (0.1 mg C﹒g soil) tracer incubation study was conducted to investigate the fate of the most abundant root exudate groups (using 13C-labeled glucose, acetic acid, and oxalic acid) in paddy vs. upland soil. After 2 days of incubation, the microbial substrate use efficiency (SUE) was >80% in paddy soil, which was approximately 1.9, 2.9, and 1.3 times that in uplands with glucose, acetic acid, and oxalic acid addition, respectively. The SUE in paddy soil with glucose or acetic acid addition was always higher than that in uplands over time (P < 0.05). In both soils, the SUE of glucose was 1–4 times that of carboxylic acids (P < 0.05). The recovery of 13C-labeled total phospholipid fatty acids (PLFAs) in paddy soils was 1.5–2 times that in uplands (P < 0.05). In both soils, bacteria preferred to utilize glucose and acetic acid to synthesize cellular components. Throughout the incubation period, bacteria dominated over fungi in terms of LMWOC consumption. Gram-positive and -negative bacteria were dominant in upland and paddy soils, respectively. From days 11–30, the contribution of fungi and actinomycetes to LMWOC utilization began to appear. Temperature positively regulated 13C distribution in microbial groups (P < 0.05), and increased dissolved organic carbon in upland soil accelerated microbial SUE. The results of this study clarify microbial effects on the high soil carbon sequestration capacity of paddy soil as compared with upland in subtropical areas.

The ability of soils to aggregate, more than the state of aggregation, promotes protected soil organic matter formation

Efforts to increase soil organic carbon (SOC) are pursued as a viable climate change mitigation strategy. Boosting SOC stocks requires increasing plant carbon (C) inputs and promoting their persistence in SOC. In well aerated mineral soils, water soluble inputs are expected to stabilize through chemical binding to minerals, forming mineral-associated organic carbon (MAOC) before or after microbial transformation, while structural inputs are expected to stabilize as particulate organic carbon (POC) via protection in soil aggregates. Although ample research is centered on the effects of soil aggregation, its disturbance (e.g., tillage), and microbial processing on SOC cycling, we still lack mechanistic understanding of how plant C input type (i.e., soluble versus structural) and disturbance (i.e., aggregate disruption) independently and in interaction affect POC and MAOC formation and stabilization in soils with inherently different degrees of aggregation.To this end, using 13C enriched structural and soluble plant inputs, we traced SOC formation and stabilization in a lab incubation experiment in soils with differing levels of aggregation, and capacity to form aggregates after disturbance. Our results showed that soluble plant inputs contributed substantially to MAOC and that higher formation and persistence of MAOC occurred in the highly aggregated soil. Moreover, the highly aggregated soil retained more soluble inputs stabilized as MAOC when disturbed. Disturbance in this fine textured, organic carbon rich soil stimulated regeneration of aggregates around structural plant inputs leading to greater persistence of aggregate-occluded POC. Soluble plant inputs, specifically, as well as structural plant inputs in the highly aggregated disturbed soil, compensated for SOC lost due to disturbance alone.Overall, this study provides mechanistic evidence suggesting that management strategies for SOC accrual should consider soil type, aggregation potential, and plant attributes to inform decisions surrounding tillage frequency and cropping regimes. Our mechanistic findings require testing. If confirmed in the field, they would suggest that no disturbance in tandem with high structural plant C inputs would benefit most SOC accrual in systems with soils that have little capacity to form organo-mineral complexes, including large aggregates. On the contrary, with sustained plant inputs, occasional disturbance in systems with soils that have a high capacity to form organo-mineral complexes can promote both POC and MAOC formation and stabilization.

Land use effects on soil microbiome composition and traits with consequences for soil carbon cycling.

The soil microbiome determines the fate of plant-fixed carbon. The shifts in soil properties caused by land use change leads to modifications in microbiome function, resulting in either loss or gain of soil organic carbon (SOC). Soil pH is the primary factor regulating microbiome characteristics leading to distinct pathways of microbial carbon cycling, but the underlying mechanisms remain understudied. Here, the taxa-trait relationships behind the variable fate of SOC were investigated using metaproteomics, metabarcoding, and a 13C-labeled litter decomposition experiment across two temperate sites with differing soil pH each with a paired land use intensity contrast. 13C incorporation into microbial biomass increased with land use intensification in low-pH soil but decreased in high-pH soil, with potential impact on carbon use efficiency in opposing directions. Reduction in biosynthesis traits was due to increased abundance of proteins linked to resource acquisition and stress tolerance. These trait trade-offs were underpinned by land use intensification-induced changes in dominant taxa with distinct traits. We observed divergent pH-controlled pathways of SOC cycling. In low-pH soil, land use intensification alleviates microbial abiotic stress resulting in increased biomass production but promotes decomposition and SOC loss. In contrast, in high-pH soil, land use intensification increases microbial physiological constraints and decreases biomass production, leading to reduced necromass build-up and SOC stabilization. We demonstrate how microbial biomass production and respiration dynamics and therefore carbon use efficiency can be decoupled from SOC highlighting the need for its careful consideration in managing SOC storage for soil health and climate change mitigation.

Soil priming effects and involved microbial community along salt gradients

Abstract. Soil salinity mediates microorganisms and soil processes, like soil organic carbon (SOC) cycling. Yet, how soil salinity affects SOC mineralization via shaping bacterial community diversity and composition remains elusive. Therefore, soils were sampled along a salt gradient (salinity at 0.25 %, 0.58 %, 0.75 %, 1.00 %, and 2.64 %) and incubated for 90 d to investigate (i) SOC mineralization (i.e., soil priming effects induced by cottonseed meal, as substrate) and (ii) the responsible bacteria community by using high-throughput sequencing and natural abundance of 13C isotopes (to partition cottonseed-meal-derived CO2 and soil-derived CO2). We observed a negative priming effect during the first 28 d of incubation that turned to a positive priming effect after day 56. Negative priming at the early stage might be due to the preferential utilization of cottonseed meal. The followed positive priming decreased with the increase in salinity, which might be caused by the decreased α diversity of microbial communities in soil with high salinity. Specifically, soil pH and electrical conductivity (EC) along the salinity gradient were the dominant variables modulating the structure of the microbial community and consequently SOC priming (estimated by distance-based multivariate analysis and path analysis). By adopting two-way orthogonal projections to latent structures (O2PLS), priming effects were linked with specific microbial taxa; e.g., Proteobacteria (Luteimonas, Hoeflea, and Stenotrophomonas) were the core microbial genera that were attributed to the substrate-induced priming effects. Here, we highlight that the increase in salinity reduced the diversity of the microbial community and shifted dominant microorganisms (Actinobacteria and Proteobacteria: Luteimonas, Hoeflea, and Stenotrophomonas) that determined SOC priming effects, which provides a theoretical basis for understanding SOC dynamics and microbial drivers under the salinity gradient.

Rare taxa mediate microbial carbon and nutrient limitation in the rhizosphere and bulk soil under sugarcane-peanut intercropping systems.

Microbial carbon (C) and nutrient limitation exert key influences on soil organic carbon (SOC) and nutrient cycling through enzyme production for C and nutrient acquisition. However, the intercropping effects on microbial C and nutrient limitation and its driving factors between rhizosphere and bulk soil are unclear. Therefore, we conducted a field experiment that covered sugarcane-peanut intercropping with sole sugarcane and peanut as controls and to explore microbial C and nutrient limitation based on the vector analysis of enzyme stoichiometry; in addition, microbial diversity was investigated in the rhizosphere and bulk soil. High throughput sequencing was used to analyze soil bacterial and fungal diversity through the 16S rRNA gene and internal transcribed spacer (ITS) gene at a phylum level. Our results showed that sugarcane-peanut intercropping alleviated microbial C limitation in all soils, whereas enhanced microbial phosphorus (P) limitation solely in bulk soil. Microbial P limitation was also stronger in the rhizosphere than in bulk soil. These results revealed that sugarcane-peanut intercropping and rhizosphere promoted soil P decomposition and facilitated soil nutrient cycles. The Pearson correlation results showed that microbial C limitation was primarily correlated with fungal diversity and fungal rare taxa (Rozellomycota, Chyltridiomycota, and Calcarisporiellomycota) in rhizosphere soil and was correlated with bacterial diversity and most rare taxa in bulk soil. Microbial P limitation was solely related to rare taxa (Patescibacteria and Glomeromycota) in rhizosphere soil and related to microbial diversity and most rare taxa in bulk soil. The variation partitioning analysis further indicated that microbial C and P limitation was explained by rare taxa (7%-35%) and the interactions of rare and abundant taxa (65%-93%). This study indicated the different intercropping effects on microbial C and nutrient limitation in the rhizosphere and bulk soil and emphasized the importance of microbial diversity, particularly rare taxa.

In situ simultaneous measuring method for the determination of key processes of soil organic carbon cycling: Soil microbial respiration using laser spectrometry.

Soil microbial heterotrophic C-CO2 respiration is important for C cycling. Soil CO2 differentiation and quantification are vital for understanding soil C cycling and CO2 emission mitigation. Presently, soil microbial respiration (SR) quantification models are based on native soil organic matter (SOM) and require consistent monitoring of δ13C and CO2. We present a new apparatus for achieving in situ soil static chamber incubation and simultaneous CO2 and δ13C monitoring by cavity ring-down spectroscopy (CRDS) coupled with a soil culture and gas introduction module (SCGIM) with multi-channel. After a meticulous five-point inter-calibration, the repeatability of CO2 and δ13C values by using CRDS-SCGIM were determined, and compared with those obtained using gas chromatography (GC) and isotope ratio mass spectrometry (IRMS), respectively. We examined the method regarding quantifying SR with various concentrations and enrichment of glucose and then applied it to investigate the responses of SR to the addition of different exogenous organic materials (glucose and rice residues) into paddy soils during a 21-day incubation. The CRDS-SCGIM CO2 and δ13C measurements were conducted with high precision (<1.0µmol/mol and 1‰, respectively). The optimal sampling interval and the amount added were not exceeded 4 h and 200mg C/100g dry soil in a 1 L incubation bottle, respectively; the 13C-enrichment of 3%-7% was appropriate. The total SR rates observed were 0.6-4.2µL/h/g and the exogenous organic materials induced -49%-28% of priming effects in native SOM mineralisation. Our results show that CRDS-SCGIM is a method suitable for the quantification of soil microbial CO2 respiration, requiring less extensive lab resources than GC/IRMS.

Interactions of manganese oxides with natural dissolved organic matter: Implications for soil organic carbon cycling

Metal (oxyhydr)oxides are key factors for the transformation and stabilization of organic carbon (OC) in soil. While sorptive interactions between Al and Fe (oxyhydr)oxides and dissolved organic matter (DOM) are well studied, the role of Mn(IV) oxides (manganates) in DOM sorption, fractionation, and oxidation has not been extensively investigated. Therefore, we examined sorptive interactions between manganates (δ-MnO2, birnessite, cryptomelane; 5 g L−1) and different DOM types (beech litter and Oa/Oe material under pine; ∼100 mg L−1 dissolved organic carbon, DOC) at pH 4 and 7 in different background electrolytes (BGE; no salt, 0.01 M NaCl or CaCl2) for up to 32 h. Changes of DOM solutions and mineral phases were assessed by solid, liquid, and gas analyses, and statistically evaluated for the effects of manganate, DOM type, pH, and BGE on DOC sorption, fractionation, and oxidative transformation. Manganates sorbed 0.2–8.7 mg OC g−1. Per unit mass, δ-MnO2 was least effective in DOC retention due to its high DOC oxidation capacity. Manganates sorbed more DOC at acidic pH and more aromatic pine than more aliphatic beech DOC, with Ca2+ generally facilitating DOC sorption. Up to 56 % of added DOC (average: 25 %) was oxidized to CO2, which is comparable to the extent of DOC respiration by soil microorganisms. DOC oxidation by δ-MnO2 and cryptomelane exceeded that of birnessite, which had the lowest specific surface area of all manganates. However, we found no difference in the efficiency of manganates to oxidize DOC, implying a similar redox activity of phyllo- and tectomanganates. More beech than pine DOM was oxidized to CO2 and an acidic pH facilitated DOC decomposition. While the presence of Na-BGE increased DOC oxidation to CO2 relative to no-salt treatments, Ca-BGE had the opposite effect, as Ca2+ apparently impeded the electron transfer from sorbed OC to structural Mn(III/IV). Contact of DOM with manganates also produced high concentrations of dissolved low-molecular-weight organic acids (mainly formate, acetate, and oxalate), accounting for up to 19 % of the initial DOC concentration. In addition, reduced specific ultraviolet absorbance of DOM solutions at 280 nm indicated preferential sorption of aromatic moieties, especially in Ca-BGE. However, in the absence of Ca2+ and at neutral pH, manganates increased the aromaticity of beech DOM, most likely due to polymerization reactions. No mineral transformations occurred after reaction of manganates with DOM, despite reductive manganate dissolution. Our results imply that soil manganates accumulate more OC in acidic soils and in presence of more aromatic DOM. However, manganates oxidatively destabilize DOC by generating CO2 and low-molecular-weight organic compounds, which is presumably more relevant in acidic soils with low concentrations of polyvalent cations and for more aliphatic DOM. The produced low-molecular-weight organic compounds may promote microbial activity and foster mineral weathering. Our results suggest a pivotal role of manganates in soil OC cycling, including the fate and bioavailability of nutrient elements associated with DOM, and in supporting ligand-promoted mineral weathering and soil formation.

Integrating variation in bacterial‐fungal co‐occurrence network with soil carbon dynamics

Abstract Bacteria and fungi are core microorganisms in diverse ecosystems, and their cross‐kingdom interactions are considered key determinants of microbiome structure and ecosystem functioning. However, how bacterial‐fungal interactions mediate soil organic carbon (SOC) dynamics remains largely unexplored in the context of artificial forest ecosystems. Here, we characterised soil bacterial and fungal communities in four successive planting of Eucalyptus and compared them to a neighbouring evergreen broadleaf forest. Carbon (C) mineralisation combined with five C‐degrading enzymatic activities was investigated to determine the effects of successive planting of Eucalyptus on SOC dynamics. Our results indicated that successive planting of Eucalyptus significantly altered the diversity and structure of soil bacterial and fungal communities and increased the negative bacterial‐fungal associations. The bacterial diversity significantly decreased in all Eucalyptus plantations compared to the evergreen forest, while the fungal diversity showed the opposite trend. The ratio of negative bacterial‐fungal associations increased with successive planting of Eucalyptus due to the decrease in SOC, ammonia nitrogen (NH4+‐N), nitrate nitrogen (NO3−‐N) and available phosphorus (AP). Structural equation modelling indicated that the potential cross‐kingdom competition, based on the ratio of negative bacterial‐fungal correlations, was significantly negatively associated with the diversity of total bacteria and keystone bacteria, thereby increasing C‐degrading enzymatic activities and C mineralisation. Synthesis and applications: Our results highlight the regulatory role of the negative bacterial‐fungal association in enhancing the correlation between bacterial diversity and C mineralisation. This suggests that promoting short‐term successive planting in the management of Eucalyptus plantations can mitigate the impact of this association on SOC decomposition. Taken together, our study advances the understanding of bacterial‐fungal negative associations to mediate carbon mineralisation in Eucalyptus plantations, giving us a new insight into SOC cycling dynamics in artificial forests.

The Deep Soil Organic Carbon Response to Global Change

Over 70% of soil organic carbon (SOC) is stored at a depth greater than 20 cm belowground. A portion of this deep SOC actively cycles on annual to decadal timescales and is sensitive to global change. However, deep SOC responses to global change likely differ from surface SOC responses because biotic controls on SOC cycling become weaker as mineral controls predominate with depth. Here, we synthesize the current information on deep SOC responses to the global change drivers of warming, shifting precipitation, elevated CO2, and land use and land cover change. Most deep SOC responses can only be hypothesized because few global change studies measure deep soils, and even fewer global change experiments manipulate deep soils. We call on scientists to incorporate deep soils into their manipulations, measurements, and models so that the response of deep SOC can be accounted for in projections of nature-based climate solutions and terrestrial feedbacks to climate change.