Molecular probe arrays printed on solid surfaces such as DNA, peptide, and proteinmicroarrays are widely used in chemical and biomedical applications especially genomicand proteomic studies (Pollack et al 1999 Nat. Genet. 23 41–6, Houseman et al 2002Nat. Biotechnol. 20 270–4, Sauer et al 2005 Nat. Rev. Genet. 6 465–76) as well as surfaceimaging and spectroscopy (Mori et al 2008 Anal. Biochem. 375 223–31, Liu et al 2006Nat. Nanotechnol. 1 47–52, Liu 2010 IEEE J. Sel. Top. Quantum Electron. 16 662–71).Unfortunately the printed molecular spots on solid surfaces often suffer low distributionuniformity due to the lingering ‘coffee stain’ (Deegan et al 1997 Nature 389 827–9) problemof molecular accumulations and blotches, especially around the edge of deposition spotscaused by solvent evaporation and convection processes. Here we present, without anysurface chemistry modification, a unique solid surface of high-aspect-ratio silver-coatedsilicon nanocone arrays that allows highly uniform molecular deposition and thussubsequent uniform optical imaging and spectroscopic molecular detection. Bothfluorescent Rhodamine dye molecules and unlabeled oligopeptides are printedon the metallic nanocone photonic substrate surface as circular spot arrays. Incomparison with the printed results on ordinary glass slides and silver-coatedglass slides, not only high printing density but uniform molecular distributionin every deposited spot is achieved. The high-uniformity and repeatability ofmolecular depositions on the ‘coffee stain’-free nanocone surface is confirmedby laser scanning fluorescence imaging and surface enhanced Raman imagingexperiments. The physical mechanism for the uniform molecular deposition is attributedto the superhydrophobicity and localized pinned liquid–solid–air interface onthe silver-coated silicon nanocone surface. The unique surface properties of thepresented nanocone surface enabled high-density, high-uniformity probe spottingbeneficial for genomic and proteomic microarrays and surface molecular imaging.