Selective area deposition of thin films, with x as large as 0.63, on oxide masked silicon wafers, was carried out in a hotwall, low pressure chemical vapor deposition system, using an alternating cyclic method described in the companion paper. Part I. In order to remove any previously deposited on the walls of the system, an HCl clean of the system was performed prior to every deposition, thereby enabling good control over the composition of the deposited films. The effect of various processing conditions, such as deposition temperature, input gas phase composition, and deposition time on the resulting film composition, morphology, and crystalline perfection were studied. For a particular film composition, there exists a morphological thickness, , at a particular deposition temperature, at which the films make a transition from smooth to rough morphology. The rough films are in a relaxed state and exhibit three‐dimensional growth. Below , the films exhibit a smooth morphology. With lowering of deposition temperature while keeping all other conditions constant, the films become richer in Ge. Thermodynamic calculations were found to be in agreement with this observation. Energy dispersive X‐ray spectroscopy using an environmemal scanning electron microscope technique was used for composition determination purpose, and transmission electron microscopy was performed to study the crystalline quality of the selectively deposited films. © 2000 The Electrochemical Society. All rights reserved.