With the Bulk Jupiter accident, the dynamic separation behavior of solid bulk cargoes in sea transportation, which is different from the usual liquefaction of cargoes, has gradually come to people’s attention and is an almost empty field that urgently needs to be researched. In this work, we first conducted vibration table tests for bauxite, replaced bauxite with transparent soil with the same particle size distribution and moisture content, and combined image processing and analysis techniques to complete the detailed visualization of the dynamic separation process. Through the above research, this article reveals the essential characteristics of dynamic separation, including the changing rules of layer-wise water content, pore water pressure, particle motion, and pore water migration. It is concluded that the most apparent feature of the dynamic separation process is the generation of a free liquid surface containing fine particles in the upper layer. The article concludes with a systematic study of the dynamic separation of typical mineral soil. The novel experimental system developed in this study contributes to elucidating the mechanism of dynamic separation of minerals and soil from a precise perspective.