Thin films of Polypyrrole/Zinc Oxide (PPy/ZnO) nanocomposite were fabricated using electrodeposition and subjected to 100 MeV Ag10+ ion beam irradiation at various fluences ranging from 1.0 × 1010 to 1.0 × 1012 ions cm-2. We characterized the well-synthesized PPy/ZnO nanocomposite thin films and examined the modification induced by irradiation using XRD, Raman, FTIR, FESEM-EDS, and AFM techniques. FESEM and AFM images reveal that PPy/ZnO exhibits a cauliflower-like nanosphere structure. An increase in roughness indicates a larger surface area of the electrode, which improves capacitive performance at 1.0 × 1010 ions cm-2, enhancing ion transport from the electrode surface to the bulk. The damage tracks formed by highly energetic ions along their path may contribute to more charge storage by increasing the roughness of the nanocomposite thin film electrodes for energy storage applications. We evaluated the electrochemical performance of thin films using CV, EIS, and GCD measurements. Electrochemical studies reveal enhanced capacitive properties up to 1.0 × 1010 ions cm-2 fluence and decrease at higher fluences. The irradiated nanocomposites achieve a higher specific capacitance of 323.11 F g-1, and the fabricated device shows cyclic stability of 86 %, a remarkable power density (P) of 0.72 kW kg-1, and an energy density (Ep) of 6.32 Wh kg-1.