In abrasive waterjet (AWJ) milling process, the ability to accurately predict outcomes such as surface roughness (Ra) and depth of cut (DoC) holds immense significance for cost reduction, resource optimization, and minimizing material wastage. However, a major challenge lies in the limited availability of AWJ milling datasets, hindering the development of robust machine learning models. To address the predicament of outcome, the present study employs a bootstrapping data augmentation technique to expand small AWJ milling datasets. Augmented data is used to train machine learning models, and hyperparameter fine-tuning is conducted using grid search and 5-fold cross-validation.In the prediction of surface roughness (Ra) for AWJ milling of alumina ceramic, the study finds that a Multi-Layer Perceptron (MLP) Regression model with a 4–100-100–1 architecture, 'relu' activation function, 'adam' solver, alpha value of 0.0001, and 'adaptive' learning rate outperforms the decision tree and random forest regression models. In the case of prediction of AWJ milling depth of cut (DoC) in alumina ceramic, the random forest regression model surpasses MLP and decision tree regression models. It employs hyperparameters including 100 estimators, 'gini' criterion, 'log2′ for maximum features, a maximum depth of 50, a minimum sample split of 10, a minimum sample leaf of 2, bootstrap as ‘True’, and a minimum impurity decrease of 0.The methodology followed to develop the machine learning models in this study is also tested in wire electrical discharge machining (WEDM) process in the machining aspects of metal matrix composites (MMC) for the prediction of surface roughness (Ra). The experimental dataset was adopted from (Satishkumar et al., 2011). In case of prediction of surface roughness (Ra) in WEDM, the random forest regression model outperforms MLP and decision tree regression models. These developed machine learning models hold the potential to greatly assist manufacturing engineers in selecting optimal input parameters for AWJ milling and WEDM, thereby reducing the wastage of machine resources.