Large Pore Channels Research Articles

Flower-like mesoporous silica nanoparticles as an antigen delivery platform to promote systemic immune response

Virus-like particles (VLPs), a kind of superior subunit vaccine, are assembled from the viral structural proteins with similar capsids to viruses. However, the efficiency of cell uptake is not satisfactory. We prepared flower-like mesoporous silica nanoparticles (SiNPs) with large pore channels and interior cavities to solve the problem. The highly loaded VLPs-SiNPs composites not only enhanced the stability of VLPs, but also delivered antigen to cells and improved the cellular uptake efficiency. Compared with naked VLPs, mice intramuscularly immunized with the VLPs-SiNPs composite induced higher specific antibodies, greater lymphocyte activation and higher level of cytokine secretion. Moreover, the VLPs-SiNPs composite as vaccine also promoted mucosal immune response through intranasal immune pathway. Therefore, the VLPs-SiNPs enable to induce strong cellular, humoral, and slight mucosal immune response through different immunization routes. These results are potentially useful for vaccine formulations and may provide further reference for vaccine design and delivery systems.

Intrapore lipids hydrophobically gate pannexin-1 channels.

Large-pore channels such as pannexin-1 (PANX1) typically lack pore-lining constriction points, leaving only speculations on how these channels functionally "close." In this issue of Science Signaling, Kuzuya et al. found that rearrangements in the PANX1 amino-terminal helix mediate channel gating by a surprising mechanism in which lipids block the ion conduction pathway, creating a hydrophobic gate.

Structures of human pannexin-1 in nanodiscs reveal gating mediated by dynamic movement of the N terminus and phospholipids.

Pannexin (PANX) family proteins form large-pore channels that mediate purinergic signaling. We analyzed the cryo-EM structures of human PANX1 in lipid nanodiscs to elucidate the gating mechanism and its regulation by the amino terminus in phospholipids. The wild-type channel has an amino-terminal funnel in the pore, but in the presence of the inhibitor probenecid, a cytoplasmically oriented amino terminus and phospholipids obstruct the pore. Functional analysis using whole-cell patch-clamp and oocyte voltage clamp showed that PANX1 lacking the amino terminus did not open and had a dominant negative effect on channel activity, thus confirming that the amino-terminal domain played an essential role in channel opening. These observations suggest that dynamic conformational changes in the amino terminus of human PANX1 are associated with lipid movement in and out of the pore. Moreover, the data provide insight into the gating mechanism of PANX1 and, more broadly, other large-pore channels.

Fabrication of hollow fibrous nanosilica with large pore channels.

The fabrication of hollow mesoporous nanosilica with well-defined structural features for optimizing the integration of functional components is a challenge. Herein, we report a facile preparation of hollow fibrous nanosilica (HFNS) with high specific surface area (666 m2 g-1), fiber-like mesoporous architectures in the inner and outer shells, and large pore channels (16.22 nm) via selective self-etching of dendritic fibrous nanosilica in an aqueous medium. The specific surface area and pore diameter increased significantly after the formation of a cavity in the center, resulting in HFNS. The HFNS can serve as a robust support for the controllable growth of gold nanoparticles with maximum catalytic performance for 4-nitrophenol reduction.

Curcumin activation of a bacterial mechanosensitive channel underlies its membrane permeability and adjuvant properties.

Curcumin, a natural compound isolated from the rhizome of turmeric, has been shown to have antibacterial properties. It has several physiological effects on bacteria including an apoptosis-like response involving RecA, membrane permeabilization, inhibiting septation, and it can also work synergistically with other antibiotics. The mechanism by which curcumin permeabilizes the bacterial membrane has been unclear. Most bacterial species contain a Mechanosensitive channel of large conductance, MscL, which serves the function of a biological emergency release valve; these large-pore channels open in response to membrane tension from osmotic shifts and, to avoid cell lysis, allow the release of solutes from the cytoplasm. Here we show that the MscL channel underlies the membrane permeabilization by curcumin as well as its synergistic properties with other antibiotics, by allowing access of antibiotics to the cytoplasm; MscL also appears to have an inhibitory role in septation, which is enhanced when activated by curcumin.

Bimetallic Ordered Large-Pore MesoMOFs for Simultaneous Enrichment and Dephosphorylation of Phosphopeptides.

Despite the fact that bimetallic metal-organic frameworks (MOFs) could afford multiple functionalities by a synergistic effect of individual metallic centers, their intrinsic microporous structure frequently restricts their wide applications with bulky molecules involved. An urgent need is consequently triggered to design bimetallic hierarchical mesoporous MOFs (mesoMOFs). Herein, Zr/Ce mesoMOFs with a uniform pore size of up to 8 nm was successfully synthesized by a copolymer template strategy with the aid of a Hoffmeister ion. The obtained Zr/Ce mesoMOFs feature high porosity, good chemical and thermal stabilities, and tunable element components, and up to 70% Zr could be incorporated into the mesoporous Ce-based framework without deteriorating its crystallinity. Thanks to the synergistic effect of inherent Ce and Zr as well as the large and open pore channels, a broad range of phosphopeptides with different molecule sizes could be effectively checked out, thanks to their simultaneous enrichment and dephosphorylation capabilities. Such an ability to efficiently concentrate phosphopeptides remained intact even in the presence of abundant non-phosphorylated species. The practical detection of phosphopeptides from human serum was also verified, prefiguring the great potentials of bimetallic large-pore mesoMOFs for the proteome applications.

Unnexins: Homologs of innexin proteins in Trypanosomatidae parasites.

Large-pore channels, including those formed by connexin, pannexin, innexin proteins, are part of a broad family of plasma membrane channels found in vertebrates and invertebrates, which share topology features. Despite their relevance in parasitic diseases such as Chagas and malaria, it was unknown whether these large-pore channels are present in unicellular organisms. We identified 14 putative proteins in Trypanosomatidae parasites as presumptive homologs of innexin proteins. All proteins possess the canonical motif of the innexin family, a pentapeptide YYQWV, and 10 of them share a classical membrane topology of large-pore channels. A sequence similarity network analysis confirmed their closeness to innexin proteins. A bioinformatic model showed that a homolog of Trypanosoma cruzi (T. cruzi) could presumptively form a stable octamer channel with a highly positive electrostatic potential in the internal cavities and extracellular entrance due to the notable predominance of residues such as Arg or Lys. In vitro dye uptake assays showed that divalent cations-free solution increases YO-PRO-1 uptake and hyperosmotic stress increases DAPI uptake in epimastigotes of T. cruzi. Those effects were sensitive to probenecid. Furthermore, probenecid reduced the proliferation and transformation of T. cruzi. Moreover, probenecid or carbenoxolone increased the parasite sensitivity to antiparasitic drugs commonly used in therapy against Chagas. Our study suggests the existence of innexin homologs in unicellular organisms, which could be protein subunits of new large-pore channels in unicellular organisms.

Highly efficient degradation of organic pollutant mixtures by a Fe(III)-based MOF-catalyzed Fenton-like process in subcritical water

Propylene glycol monomethyl ether acetate (PGMEA) photoresist solvent and monoaromatics are typical organic pollutants found in the wastewater discharged from semiconductor manufacturing processes. Conventional treatment technologies, however, remain mostly ineffective to eliminate these pollutants from aqueous streams. Herein, we developed a novel strategy for highly efficient degradation of PGMEA and archetypal monoaromatics (i.e., benzene, toluene, xylene, phenol, and cresol) in aqueous solution by heterogeneous Fenton-like process with a flexible Fe-MOF (MIL-88B) under mild subcritical water (SCW) condition (100 °C). The as-synthesized MIL-88B(Fe) microbipyramids possess large pore channels (∼32 nm) and open iron sites. The results showed that the SCW-mediated heterogeneous Fenton-like process at 100 °C with an optimal catalyst loading of 1 wt% exhibited a remarkable degradation performance toward target organic pollutants in a multicomponent system, affording a 92% total organic carbon (TOC) removal in 60 min. This mineralization efficiency was found to be notably superior to those of traditional homogeneous Fenton (FeSO4/H2O2; ∼54%) and Fenton-SCW (∼60%) processes. The practicability of this approach was demonstrated using real world water samples (i.e., river water, fishpond water, and wastewater) with >80% TOC removal efficiency. This study showed that the heterogeneous Fenton-like process utilizing an inexpensive, nontoxic, and reusable MIL-88B(Fe) MOF under mild SCW conditions is a promising strategy for treating semiconductor waste effluents and environmental water matrices containing toxic recalcitrant organics in an eco-friendly and efficient manner.

Study on properties of gossan ore from zinc sulfide deposit

Because of its complex composition, low content of valuable metals and high development cost, the gossan ore has not been paid much attention by scholars at home and abroad. In this paper, the properties of gossan ore from zinc sulfide deposit were studied by the methods of mineralogical analysis, BET analysis and SEM/EDS analysis. The results show that the studied ore is typical zinc-bearing gossan type ore. The main elements in the gossan ore are zinc and iron, as well as a certain amount of silicon. The iron mineral of ore is limonite, most of which are monomers, a few connected with clay, dolomite and so on, and are closely adhered with some siderite, which generally contains zinc. Zinc minerals are mainly smithsonite and hemimorphite, a small amount of sphalerite, zinc mica, most of the siderite and limonite symbiosis. The nitrogen adsorption-desorption isotherm of the gossan ore is a typical type III isotherm, and the isotherm is concave and has no inflexion, which shows that the interaction of adsorbents is stronger than that of adsorbents and materials. The specific surface area of gossan ore is small, mainly composed of micro-pores, the smaller specific surface area and pore volume limit its adsorption capacity, which intimates that the untreated gossan ore is not a good adsorbent. The gossan ore particles are composed of many irregular crystal particles with uniform size and many large pore channels appear in the gossan ore particles. The particles are smaller and more dispersed, and that the interconnections between larger particles are mainly caused by the direct interaction of some smaller particles. This research will lay a theoretical basis for the follow-up development and utilization of the gossan ore.

Large-pore covalent organic frameworks for ultra-fast tight ultrafiltration (TUF)

Tight ultrafiltration (TUF) membranes featuring specific pore sizes are increasingly developed to bridge the gap between nanofiltration and ultrafiltration. So far, a wealth of efforts has been devoted to tackle the limitation found in TUF, but there still lacks a facile accessibility to upgrade TUF membranes with simultaneously improved permeance and selectivity. Herein, we report a large-pore covalent organic framework (LP-COF) as the building material to prepare ultra-permeable TUF membranes for fast separations. The LP-COF layers with an exceptionally large aperture size of up to ~3.6 nm are synthesized on macroporous substrates through a unidirectional diffusion method. The resultant LP-COF layers show a moderate crystallinity and low thickness down to ~60 nm, and allow ultrafast water permeation. Surprisingly, the optimal LP-COF membrane exhibits an unprecedented water permeance of ~3147 L m−2 h−1 MPa−1 with a high Congo red rejection (~92.6%), which is basically unchanged after several cycles of filtration. Moreover, the large-pore channels enable an unimpeded pass of ions, thus affording the membrane an excellent dye/salt separation competence, and largely exceeding state-of-the-art membranes. Therefore, this work opens up a new opportunity in producing high-performance TUF membranes by large-pore COFs for rapid and precise separations.

Human CALHM5: Insight in large pore lipid gating ATP channel and associated neurological pathologies.

Recently calcium homeostasis modulators (CALHMs) are identified as ATP release channels play crucial role in functioning of neurons including gustatory signaling and neuronal excitability. Pathologies of Alzheimer's disease and depression have been associated with the dysfunction of CALHMs. Recently, CALHMs has been emerged as an important therapeutic research particularly in neurobiological studies. CALHM1 is most extensively studied among CALHMs and is an ATP and ion channel that is activated by membrane depolarization or removal of extracellular Ca2+. Despite the emerged role of CALHM5 shown by an recently assembled data; however, the neuronal function remains obscure until the first Cryo-EM structure of CALHM5 was recently solved by various research group which acts as a template to study the hidden functional properties of the CALHM5 protein based on structure function mechanism. It provides insight in some of the different pathophysiological roles. CALHM5 structure showed an abnormally large pore channel structure assembled as an undecamer with four transmembrane helices (TM1-TM4), an N-terminal helix (NTH), an extracellular loop region and an intracellular C-terminal domain (CTD) that consists of three α-helices CH1-3. The TM1 and NTH were always poorly defined among all CALHMs; however, these regions were well defined in CALHM5 channel structure. In this context, this review will provide insight in structure, function and mechanism to understand its significant role in pathological diseases particularly in Alzheimer's disease. Moreover, it focuses on CALHM5 structure and recent associated properties based on Cryo-EM research.

PANX2 and brain lower grade glioma genesis: A bioinformatic analysis.

PANX2 forms large-pore channels mediating ATP release in response to physiological and pathological stimuli. Although PANX2 shows involvements in glioma genesis, the underlying mechanism remains unclear. PANX2 mRNA expression was analyzed via Oncomine and was confirmed via Gene Expression Profiling Interactive Analysis (GEPIA). The influence of PANX2 on overall survival (OS) of glioma was evaluated using LinkedOmics and further assessed through Cox regression analysis. The correlated genes with PANX2 acquired from LinkedOmics were validated through GEPIA and cBioPortal. Protein-protein interaction (PPI) of these genes was then obtained using Search Tool for the Retrieval of Interacting Genes (STRING) and Cytoscape with MCODE plug-in. All the PANX2-related genes underwent Gene Ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses. The correlation between PANX2 and cancer immune infiltrates was evaluated via Tumor Immune Estimation Resource (TIMER). A higher expression of PANX2 only revealed a better OS in brain low grade glioma (LGG). PANX2-related genes in LGG functionally enriched in neuroactive ligand-receptor interaction, synaptic vesicle cycle, and calcium signaling. The hub genes from highest module of PPI were mainly linked to chemical synaptic transmission, plasma membrane, neuropeptide, and the pathway of neuroactive ligand-receptor interaction. Besides, PANX2 expression was negatively associated with infiltrating levels of macrophage, dendritic cells, and CD4+ T cells. This study demonstrated that PANX2 likely participated in LGG pathogenesis by affecting multiple molecular pathways and immune-related processes. PANX2 was associated with LGG prognosis and might become a promising therapeutic target of LGG.

Exploring the Three-Dimensional Architectures of Two Families of Large Pore Channels (CALHM1,2 and Pannexin1)

Biological membranes of many tissues contain channels with large pores that permeate a wide variety of ions and metabolites. Examples include the connexin, innexin, pannexin and the calcium homeostasis modulator protein (CALHM) families. To maintain cell viability, it is critical for the gating and permeability of these big pores to be tightly regulated. Structural information on pannexins and CALHMs, and hence an understanding of the molecular mechanisms that underpin their channel activities in a structural context had been completely lacking at the beginning of this project.

Novel structurally characterized Co(II) metal-organic framework and Cd(II) coordination polymer self-assembled from a pyridine-terminal salamo-like ligand bearing various coordination modes

Two novel structurally characterized Co(II) metal-organic framework (Co(II) MOF) and Cd(II) coordination polymer (Cd(II) CP), [{Co(L)}2]n·nCH3COCH3 and [Cd(H2L)(CH3COO)2]n were self-assembled from a newly designed salamo-like ligand H2L bearing double terminal pyridine groups and Co(II) and Cd(II) ions, respectively. In the Co(II) MOF, the Co1 and Co2 ions are six-coordinated octahedron geometries, have similar coordination environments, and are located in the N2O2 cavities of the ligand (L)2− units, forming "Co1-L" and "Co2-L" parts, respectively. The terminal pyridine N atoms of the "Co1-L" (or "Co2-L") part are connected with "Co1-L" and "Co2-L" parts respectively, forming a metal-organic framework with double helix structure in thea-direction and regular channels in the c-direction. In the Cd(II) CP, Cd(II) ion is seven-coordinated single cap triangular prism geometry, did not participate in the coordination of the N2O2 cavity, but coordinated with free acetate in the solution. Two bidentate acetate anions chelate to Cd1 ion, and two Cd1 ions are bridged by O atom of one of the acetate anions to form Cd2(OAc)2 unit which was used as the junction point to connect with the terminal pyridine N atoms of H2L. Finally, the coordination polymer with large pore channels was formed. Spectroscopic analyses of H2L and its Co(II) MOF and Cd(II) CP are performed using IR, UV–Vis and fluorescence spectroscopy. TGA analyses show that the Co(II) MOF and Cd(II) CP have good stabilities. Various short-range interactions in the Co(II) MOF and Cd(II) CP are investigated through Hirshfeld surfaces analyses.

A method for assessing ionic and molecular permeation in connexin hemichannels.

Connexin hemichannels are permeable to both atomic ions and small molecules. Yet, they have different selectivity for ions and signaling molecules critical for biological functions. Activity of connexin hemichannels in living cells is commonly evaluated by methods that include electrophysiology and fluorescence-based approaches. Although less common, luminescence and radioactivity-based uptake/release assays have been also successfully used to determine selectivity and permeability to different molecules. The current methods, however, have important technical and quantitative limitations that make them unsuitable for simultaneously evaluating ionic and molecular permeability using different stimuli that control channel gating (e.g., voltage or extracellular Ca2+). To address this, we have recently designed a novel methodology that combines two-electrode voltage clamp (TEVC) and dye uptake assays in translucent Xenopus oocytes. This method allows for the evaluation of molecular transport kinetics in connexin hemichannels, and its utility can also be extended to other large pore channels, such as those formed by pannexin and CALHM. In this article, we describe step by step the protocol to perform the TEVC/Dye uptake assay.

Powerful Antibacterial Peptides from Egg Albumin Hydrolysates.

Native egg albumin (NEA) was isolated from hen eggs and hydrolyzed by pepsin to produce hydrolyzed egg albumin (HEA). HEA was chemically characterized and screened for its antibacterial activity against 10 pathogenic bacteria (6 Gram (+) and 4 Gram (−)). The SDS-PAGE pattern of NEA showed molecular weights of hen egg albumin subunits ranging from 30 to 180 kDa. The highest intensive bands appeared at a molecular mass of about 50 and 97 kDa. Ultra-performance liquid chromatography (UPLC) of the peptic HEA revealed 44 peptides, 17 of them were dipeptides, and the other 27 fractions corresponded to bigger peptides (3–9 amino acids). The dipeptides and big peptides represented 26% and 74% of the total hydrolysate, respectively. The MIC of HEA was about 100 μg/L for Listeria monocytogenes, Bacillus cereus, Staphylococcus aureus, Salmonella typhimurium, Streptococcus pyogenes, and Klebsiella oxytoca and 150 μg/L for Pseudomonas aeruginosa, Bacillus subtilis, and Listeria ivanovii and 200 μg/L for Escherichia coli. L. monocytogenes was the most sensitive organism to HEA. Mixtures of HEA with antibiotics showed more significant antibacterial activity than individually using them. Transmission electron microscopy (TEM) revealed various signs of cellular deformation in the protein-treated bacteria. HEA may electrostatically and hydrophobically interact with the cell wall and cell membrane of the susceptible bacteria, engendering large pores and pore channels leading to cell wall and cell membrane disintegration. Higher cell permeability may, thus, occur, leading to cell emptiness, lysis, and finally death. Alternatively, no toxicity signs appeared when HEA was administrated to Wistar Albino rats as one single dose (2000, 5000 mg/kg body weight) or repeated daily dose (500 and 2500 mg/kg body weight/day) for 28 days to disclose the possible toxicity hazards. HEA did not produce any death.

A novel voltage-clamp/dye uptake assay reveals saturable transport of molecules through CALHM1 and connexin channels

Large-pore channels permeable to small molecules such as ATP, in addition to atomic ions, are emerging as important regulators in health and disease. Nonetheless, their mechanisms of molecular permeation and selectivity remain mostly unexplored. Combining fluorescence microscopy and electrophysiology, we developed a novel technique that allows kinetic analysis of molecular permeation through connexin and CALHM1 channels in Xenopus oocytes rendered translucent. Using this methodology, we found that (1) molecular flux through these channels saturates at low micromolar concentrations, (2) kinetic parameters of molecular transport are sensitive to modulators of channel gating, (3) molecular transport and ionic currents can be differentially affected by mutation and gating, and (4) N-terminal regions of these channels control transport kinetics and permselectivity. Our methodology allows analysis of how human disease-causing mutations affect kinetic properties and permselectivity of molecular signaling and enables the study of molecular mechanisms, including selectivity and saturability, of molecular transport in other large-pore channels.

Green Synthesis of Ni@PEDOT and Ni@PEDOT/Au (Core@Shell) Inverse Opals for Simultaneous Detection of Ascorbic Acid, Dopamine, and Uric Acid.

We demonstrate a water-based synthetic route to fabricate composite inverse opals for simultaneous detection of ascorbic acid (AA), dopamine (DA), and uric acid (UA). Our process involves the conformal deposition of poly(3,4-ethylenedioxythiophene) (PEDOT) and PEDOT/Au on the skeletons of Ni inverse opals via cyclic voltammetric scans (CV) to initiate the electropolymerization of 3,4-ethylenedioxythiophene (EDOT) monomers. The resulting samples, Ni@PEDOT, and Ni@PEDOT/Au inverse opals, exhibit a three-dimensional ordered macroporous platform with a large surface area and interconnected pore channels, desirable attributes for facile mass transfer and strong reaction for analytes. Structural characterization and material/chemical analysis including scanning electron microscope, X-ray photoelectron spectroscopy, and Raman spectroscopy are carried out. The sensing performances of Ni@PEDOT and Ni@PEDOT/Au inverse opals are explored by conducting CV scans with various concentrations of AA, DA, and UA. By leveraging the structural advantages of inverse opals and the selection of PEDOT/Au composite, the Ni@PEDOT/Au inverse opals reveal improved sensing performances over those of conventional PEDOT-based nanostructured sensors.

Ordered Large-Pore MesoMOFs Based on Synergistic Effects of TriBlock Polymer and Hofmeister Ion.

Ordered mesoporous metal-organic frameworks (mesoMOFs) were constructed with a uniform pore size up to about 10 nm and thick microporous walls, opening up the possibility for the mass diffusion of large-size molecules through crystalline MOFs. The synergistic effects based on triblock copolymer templates and the Hofmeister salting-in anions promote the nucleation of stable MOFs in aqueous phase and the in situ crystallization of MOFs around templates, rendering the generation of a microcrystal with periodically arranged large mesopores. The improved mass transfer benefiting from large-pore channels, together with robust microporous crystalline structure, endows them as an ideal nanoreactor for the highly efficient digestion of various biogenic proteins. This strategy could set a guideline for the rational design of new ordered large-pore mesoMOFs with a variety of compositions and functionalities and pave a way for their potential applications with biomacromolecules.

Structures of human pannexin 1 reveal ion pathways and mechanism of gating.

Pannexin 1 (PANX1) is an ATP-permeable channel with critical roles in a variety of physiological functions such as blood pressure regulation1, apoptotic cell clearance2 and human oocyte development3. Here we present several structures of human PANX1 in a heptameric assembly at resolutions of up to 2.8angström, including an apo state, a caspase-7-cleaved state and a carbenoxolone-bound state. We reveal a gating mechanism that involves two ion-conducting pathways. Under normal cellular conditions, the intracellular entry of the wide main pore is physically plugged by the C-terminal tail. Small anions are conducted through narrow tunnels in the intracellular domain. These tunnels connect to the main pore and are gated by a long linker between the N-terminal helix and the first transmembrane helix. During apoptosis, the C-terminal tail is cleaved by caspase, allowing the release of ATP through the main pore. We identified a carbenoxolone-binding site embraced by W74 in the extracellular entrance and a role for carbenoxolone as a channel blocker. We identified a gap-junction-like structure using a glycosylation-deficient mutant, N255A. Our studies provide a solid foundation for understanding the molecular mechanisms underlying the channel gating and inhibition of PANX1 and related large-pore channels.