Abstract The purpose of this work is to investigate the effect of thermal radiation on convective heat transfer for an electrically conducting hybrid nanofluid moving perpendicularly through a microchannel with parallel plates heated under isothermal conditions, while subjected to a transverse magnetic field. In this case, one surface exhibited a superhydrophobic slip and temperature jump, whereas the others did not. The objective of the study was to determine the impacts of thermal radiation, heat generation, and magnetism on the volume flow rate, velocity, and bulk temperature when either surface is heated by a constant wall temperature. Our findings reveal that the radiation parameter significantly influences both the Nusselt number and skin friction differently depending on the surface conditions, while also reducing flow rate and bulk temperature. The heat generation parameter similarly affects these variables but varies with the type of surface being heated. Additionally, both the velocity and temperature profiles increase with the porosity parameter and heat generation coefficient, regardless of the heated surface. Statistical analysis confirms the significance of magnetic and heat generation parameters in determining skin friction and the Nusselt number, and streamlines and isotherms illustrating the effects of thermal radiation and magnetism on two different hybrid nanofluids when heated on nonslip and superhydrophobic surfaces were provided. These insights provide valuable information for the design and maintenance of mini- and microdevices in the fields of nanoscience and nanotechnology.