To improve the heat dissipation performance of electronic components, this study proposed a novel biomimetic microchannel design inspired by snowflakes and squid fins. A numerical simulation method was employed to investigate the cooling characteristics of nanofluids at different concentrations within this biomimetic microchannel heat sink. The microchannel is shaped like a snowflake, while the base plate features a biomimetic squid fin structure. The study focused on analyzing the effects of waveform height (amplitude A = 0.1–0.4 mm) and waveform frequency (B = 0.5–2π) on heat transfer performance. The results indicated that when nanofluids flow over a base plate with a wavelength frequency of B = 0.5π, there is a significant enhancement in heat exchange while simultaneously reducing flow resistance. In the microchannel heat sink (A = 0.3 mm, B = π), the thermal conductivity of the nanofluids can be increased by up to 32.56 %, with a maximum comprehensive evaluation index of 1.68. This research provides important guidance for the application of nanofluids and biomimetic microchannels in the thermal control of electronic devices.