Improving nutrient use efficiency and reducing GHG emissions are important environmental priorities for organic-certified dairy operations. The objectives of this research were to quantify annual nutrient use and GHG emissions in 6 organic New York dairy farms. Farm-gate nutrient mass balances (NMB) were estimated with the Cornell NMB calculator. Whole-farm GHG emissions were estimated using the Cool Farm Tool (CFT) and COMET. Farm-gate NMB were low, ranging from -6.5 to 19 kg N/ha for N1 (without legume N fixation), 26 to 71 kg N/ha for N2 (including N fixation), -2.4 to 8.2 kg P/ha for P, and 1.1 to 19.8 kg K/ha for K. Additional nutrient imports, coupled with nutrient management planning, adequate legume stands, and diet balancing may help improve P balances and ensure no N deficiencies in the system. Estimates of annual GHG emissions intensity ranged from 0.98 to 2.10 kg of CO2-equivalents (CO2-eq) per kilogram of fat- and protein-corrected milk (FPCM) estimated by CFT, and from 0.69 to 2.48 kg CO2-eq/kg FPCM estimated by COMET. Enteric fermentation, feed production, and fuel and energy use represented the largest sources of GHG. For farms with liquid manure storages, manure management was also a significant source. Estimates of soil carbon (C) stock changes from CFT were in agreement with or smaller than previous studies, and estimates from COMET were in agreement or greater. Variability and uncertainty in the results for soil C stock change indicate that more research and new protocols are needed. The effects of individual management changes on GHG emissions intensity were small, ranging from -8 to +7% in CFT, and -8% to +8% in COMET. The management changes that resulted in the largest reductions in GHG emissions intensity included increasing individual cow productivity and ratio of milk to total feed, and implementation of manure treatment systems.
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