X-ray Structure Determination Research Articles

Synthesis, single crystal X-ray structure determination, Hirshfeld surface analysis, interaction energies, and density functional theory calculations of N,N'-(cyclohexane-1,4-dicarbonothioyl)bis(4-methylbenzamide)

The present research offers convenient synthesis, molecular and crystal structures of C2 symmetric N,N'-(cyclohexane-1,4-dicarbonothioyl)bis(4-methylbenzamide). The synthesized bis-amide crystallized in monoclinic crystal system, having space group of P 21/c with a = 17.8669 (14) Å, b = 6.3495 (5) Å, c = 9.6195 (7) Å, β = 101.567 (8)°, Z = 2 and V = 1069.13 (15) Å3. The asymmetric unit contains cyclohexane ring located on an inversion center, one dicarbonothioyl and one methylbenzamide group. In the crystal structure, the N–H···O, C–H···O and C–H···S hydrogen bonds link the molecules, enclosing R21(6), R22(16) and R22(22) ring motifs, into three-dimensional architecture. Hirshfeld surface (HS) analysis revealed the prevailing significance of hydrogen bond contacts. HS analysis suggested prominent contributions for crystal packing encompasses H…H (49.6%), H…C/C…H (18.9%) and H…S/S…H (16.0%). Hydrogen bonding and van der Waals contacts are the dominant interactions in the crystal packing. The respective volume of the crystal voids and the percentage of free spaces in the unit cell is calculated as 117.87 Å3 and 11.02% indicating the absence of any large cavity within the crystal and the associated stability of the crystal. Evaluation of the electrostatic, dispersion and total energy frameworks revealed that stabilization is dominated by dispersion energy contribution. Moreover, optimized molecular structure, using density functional theory at B3LYP/6-311G(d,p) level, were compared with the experimentally determined ones. HOMO–LUMO energy gap was determined, frequencies and molecular electrostatic potential surface were calculated at the B3LYP/6–311G level to predict sites for electrophilic and nucleophilic attacks. The significant charge polarity, half molecule spread of HOMO and LUMO impart bis-amide nucleophilic as well as electrophilic behavior with relative potency depending upon the nature of the attacking molecule.

(4Z,4′Z)-2,2′-(Ethane-1,2-diylbis(sulfanediyl))bis(1-phenyl)-4-(pyridin-2-ylmethylene)-1H-imidazol-5(4H)-one)dicopper(II) Tetrabromide

The title compound was characterized for the first time by a full range of physical methods including UV, FTIR, mass spectrometry and X-ray structure determination. The copper atoms have a distorted tetrahedral structure close to a trigonal pyramid.

Structures, Characterization and DFT Studies of Four Novel Nickel Phenanthroline Complexes

Four Ni–phen complexes were prepared and characterized by FTIR and thermal analysis. The X-ray structure determination shows that the geometry around NiII ions in complexes 1, [Ni(phen)2(H2O)(ONO2)](NO3); 2, [Ni(phen)2(H2O)Cl]Cl; 3, [Ni(phen)(CH3CN)(ONO2)(O2NO)] and 4, [Ni(phen)3](NO3)2.H2O.C2H5OH is considerably distorted octahedral. The coordination core geometries in 1, 2, 3 and 4 are NiN4O2, NiN4OCl, NiN3O3 and NiN6, respectively. The crystal packing and crystal supramolecularity analysis of the complexes reveal the importance of aryl∙∙∙aryl interactions, and both offset face-to-face (OFF) and edge-to-face (EF) motifs are dominant. Hydrogen bonding interactions in these structures reinforce aryl∙∙∙aryl interactions. FTIR proved the coordination of M-N and M-Cl as well as the presence of nitro groups in the complexes, while thermal analysis revealed that the loss of water, chloro and nitro groups occurred before the degradation of phenanthroline ligand in the complexes. DFT study indicates that a strong correlation exists among theoretical and experimentally determined geometric parameters with distorted octahedral geometry. The charge density in HOMO is localized on the metal halogen bond and nitrate group (NO3−), whereas the LUMO cloud density is mainly distributed on the phen ring, which indicates the electroactive nature of the ring.

Synthesis, molecular structure, mesomorphism and DFT/TD-DFT calculations of square-planar bis[1-((p-tolylimino)methyl)naphthalen-2-olato-κ2N,O]nickel and copper(II) complexes

Reaction of the Schiff base ligand (E)-1-((p-tolylimino)methyl)naphthalen-2-ol (HL) with nickel(II) and copper(II) acetate provides the bis[1-((p-tolylimino)methyl)naphthalen-2-olato-κ2N,O]Ni and Cu(II) complexes (1 and 2), respectively. X-ray structure determinations reveal coordination of two N,O-chelate Schiff base ligands to the metal ion in a square-planar geometry for both the complexes. The phase purity of bulk microcrystalline samples is confirmed by Powder XRD patterns. The solid-state magnetic moment (µeff = 2.73 (1) and 2.06 µB (2)) indicates paramagnetic nature of the complexes. Thermal analyses by differential scanning calorimetry (DSC) and polarizing light microscopic (PLM) observations suggest mesomorphic property for 2. Cyclic voltammograms recommend a quasi-reversible two one electron charge transfer processes for 2 in dimethylformamide. Geometry optimization and excited state properties by DFT/TD-DFT calculations reproduce the experimental bond distances and angles as well as the experimental electronic spectra.

Broad-spectrum coronavirus 3C-like protease peptidomimetic inhibitors effectively block SARS-CoV-2 replication in cells: Design, synthesis, biological evaluation, and X-ray structure determination

Despite the approval of vaccines, monoclonal antibodies and restrictions during the pandemic, the demand for new efficacious and safe antivirals is compelling to boost the therapeutic arsenal against the COVID-19. The viral 3-chymotrypsin-like protease (3CLpro) is an essential enzyme for replication with high homology in the active site across CoVs and variants showing an almost unique specificity for Leu-Gln as P2–P1 residues, allowing the development of broad-spectrum inhibitors.The design, synthesis, biological activity, and cocrystal structural information of newly conceived peptidomimetic covalent reversible inhibitors are herein described. The inhibitors display an aldehyde warhead, a Gln mimetic at P1 and modified P2–P3 residues. Particularly, functionalized proline residues were inserted at P2 to stabilize the β-turn like bioactive conformation, modulating the affinity. The most potent compounds displayed low/sub-nM potency against the 3CLpro of SARS-CoV-2 and MERS-CoV and inhibited viral replication of three human CoVs, i.e. SARS-CoV-2, MERS-CoV, and HCoV 229 in different cell lines. Particularly, derivative 12 exhibited nM-low μM antiviral activity depending on the virus, and the highest selectivity index. Some compounds were co-crystallized with SARS-CoV-2 3CLpro validating our design. Altogether, these results foster future work toward broad-spectrum 3CLpro inhibitors to challenge CoVs related pandemics.

Homoleptic Enantiopure Lanthanide Complexes: Synthesis, Structure, and Characterization

Herein, we report on a new class of enantiopure homoleptic lanthanide complexes stabilized by chiral iminophosphonamide ligands. The reaction of anhydrous lanthanide trichlorides with [KL]2 (L = [Ph2P{N(R)CH(CH3)Ph}2] = (R)-PEPIA)) in a 1:3 molar ratio yielded a series of homoleptic lanthanide complexes with the general formula of L3Ln (Ln = Y, La, Sm, Tb, and Lu). The X-ray structural determination revealed that the rare-earth metal ion is hexacoordinated by three iminophosphonamide ligands, and an enantiomeric pure propeller-type structure with a Λ-configuration was observed for all complexes. The photoluminescence properties of the Sm(III) complex and the Tb(III) complex were studied. The Tb(III) complex showed ligand-absorption-enhanced, long-lived, metal-centered green photoluminescence with a quantum yield of 15% in the solid state.

Syntheses, Characterization, Crystal Structures and Antimicrobial Activity of Copper(II), Nickel(II) and Zinc(II) Complexes Derived from 5-Bromo-2- ((cychlopentylimino)methyl)phenol

Four new complexes of copper(II), nickel(II) and zinc(II), [CuL2] (1), [Ni3L2(4-BrSal)2(CH3COO)2(CH3OH)2]·2CH3OH (2), [ZnBr2(HL)2] (3) and [ZnL(dca)]n (4), where L is 5-bromo-2-(cychlopentylimino)methyl)phenolate, HL is the zwitterionic form of 5-bromo-2-((cychlopentylimino)methyl)phenol, 4-BrSal is the monoanionic form of 4-bromosalicylaldehyde, dca is dicyanamide anion, were synthesized and characterized by elemental analysis, IR and UV-Vis spectroscopy. The structures of the complexes were further confirmed by single crystal X-ray structure determination. Complex 1 is a mononuclear copper(II) compound, with a crystallographic two-fold rotation axis symmetry. The Cu atom is in distorted square planar coordination. Complex 2 is a trinuclear nickel(II) compound, with an inversion center symmetry. The Ni atoms are in octahedral coordination. Complex 3 is a mononuclear zinc(II) compound, while complex 4 is a dca bridged polymeric zinc(II) compound. The Zn atoms are in tetrahedral coordination. The compounds were assayed for their antimicrobial activities.

Syntheses, Characterization, Crystal Structures and Antimicrobial Activity of Copper(II), Nickel(II) and Zinc(II) Complexes Derived from 5-Bromo-2-((cychlopentylimino)methyl)phenol.

Four new complexes of copper(II), nickel(II) and zinc(II), [CuL2] (1), [Ni3L2(4-BrSal)2(CH3COO)2(CH3OH)2]·2CH3OH (2), [ZnBr2(HL)2] (3) and [ZnL(dca)]n (4), where L is 5-bromo-2-((cychlopentylimino)methyl)phenolate, HL is the zwitterionic form of 5-bromo-2-((cychlopentylimino)methyl)phenol, 4-BrSal is the monoanionic form of 4-bromosalicylaldehyde, dca is dicyanamide anion, were synthesized and characterized by elemental analysis, IR and UV-Vis spectroscopy. The structures of the complexes were further confirmed by single crystal X-ray structure determination. Complex 1 is a mononuclear copper(II) compound, with a crystallographic two-fold rotation axis symmetry. The Cu atom is in distorted square planar coordination. Complex 2 is a trinuclear nickel(II) compound, with an inversion center symmetry. The Ni atoms are in octahedral coordination. Complex 3 is a mononuclear zinc(II) compound, while complex 4 is a dca bridged polymeric zinc(II) compound. The Zn atoms are in tetrahedral coordination. The compounds were assayed for their antimicrobial activities.

Sterically crowded di-indazolyl-pyridines: Iron(II) complexation studies

Abstract 4-(2,6-Di(2H-indazol-2-yl)pyridin-4-yl)benzoic acid (1) and 10-(2,6-di(1H-pyrazol-1-yl)pyridin-4-yl)anthracene-9-carboxylic acid (2) were required for adsorption studies on Ag(111), with a view to subsequent iron(II) complexation and formation of well-ordered spin-responsive self-assembled monolayers. While the generation of these compounds has remained elusive, several intermediates and by-products were obtained, potentially useful as dipyrazolylpyridine-related derivatives and for metal ion coordination. 3,5-Dichloro-2,6-diindazolylpyridine-4-amine, which forms as a mixture of regioisomers, was synthesised, the mixture separated, and the components characterised (3,5-dichloro-2,6-di(2H-indazol-2-yl)pyridin-4-amine; 3,5-dichloro-2-(1H-indazol-1-yl)-6-(2H-indazol-2-yl)pyridin-4-amine; 3,5-dichloro-2,6-di(1H-indazol-1-yl)pyridin-4-amine). Their iron(II) complexes have been prepared and fully characterised, including single crystal X-ray structure determination. The complexes are instructive examples of the influence of ligand design (“steric jamming”) on the spin-crossover (SCO) activity of FeII centres. Bulky substitution, which entails twisted ligand conformation, increases intramolecular crowding. This prevents contraction of the metal coordination sphere, which would be a prerequisite for thermally inducible SCO. Mössbauer spectroscopy has revealed that the complexes remain predominantly high-spin (HS) between 20 and 200 K, and that a mixture of conformational HS isomers is present in the microcrystalline solid.

Ruthenium (0) complexes with NHC tetrazolylidene ligands: Synthesis, characterization and reactivity

Here we present two new phenyl-tetrazolylidene carbenes as ligands in non-mesoionic (1,4-substitution pattern) and mesoionic (1,3-substitution pattern) tetrazolylidene-cyclopentadienone ruthenium(0) complexes namely 1 and 2 respectively. The complexes have been obtained in good yield and fully characterized; X-ray structure determination confirmed the binding mode of the ligand for 2. Reactivity studies has been performed in order to shed light on the fact that the phenyl substituent position in the heterocyclic ligand can seriously change complexes behavior and stability.

Chirality as a Feature of the Crystal Structure of Lanthanide Ion Complexes—Some Simple Examples

Single-crystal X-ray structure determinations are reported for four lanthanide complexes, [Dy(bipy)2Cl2(OH2)2]Cl.H2O (bipy = 2,2′-bipyridine), 1; [La2(phen)2(O2CCH3)4(NO3)2] (phen = 1,10-phenanthroline), 2; [Lu(terpy)(O2CCH3)3].NaNO3 (terpy = 2,2′;6′,2″-terpyridine) 3; and [Lu(phen)(O2CH)3(OH2)].H2O, 4. Dispersion interactions within the stacked arrays of coordinated aza-aromatic units found in all four complexes appear to be a significant structural influence in the solid state. For complex 1, there are additional interactions beyond dispersion, which suggests that it may be the means whereby the Δ and Λ forms contribute to the overall chiral nature of the crystal. These weak intermolecular interactions were investigated in detail using the Hirshfeld surface analysis.

Synthesis, single crystal structure determinations, Hirshfeld surface analysis, crystal voids, interaction energies, and density functional theory studies of functionalized 1,3-thiazoles

The current research offers synthesis, single crystal X-ray structure determinations, Hirshfeld surface analysis, interaction energies, and density functional theory calculations of functionalized 1,3-thiazoles (5a-5b). Consequently, the synthesized compounds were crystalized in monoclinic crystal systems with P 21/c space groups. The intermolecular interactions were visualized by Hirshfeld surface (HS) analysis. On the other hand, voids are determined, interaction energies were calculated, and the energy frameworks were constructed to clarify the types of energy contributions dominated in the stabilizations of the crystals (5a and 5b). Moreover, density functional theory, electronic, and vibrational calculations provided insight into the redox behavior of the synthesized compounds (5a and 5b). The electronic energies, densities of frontier molecular orbitals coupled with vibrational frequency and transition state as well as thermodynamic parameters suggested electrophilic characteristics for both compounds (5a and 5b). However, compound 5a was predicted to be more reducible than 5b in charge transfer reactions.

Trinuclear and Cyclometallated Organometallic Dinuclear Pt-Pyrazolato Complexes: A Combined Experimental and Theoretical Study

Two differently substituted pyrazole ligands have been investigated with regard to the topology of their Pt complexes: upon deprotonation, two mononuclear 1:2 PtII-pyrazole complexes—one of the sterically unhindered 4-Me-pzH and one of the bulky 3,5-tBu-pzH (pzH = pyrazole)—yield the corresponding 1:2 PtII-pyrazolato species; the former a triangular, trinuclear metallacycle (1), and the latter a dinuclear, half-lantern species (2) formed via the unprecedented cyclometallation of a butyl group. Stoichiometric oxidation of the colorless PtII2 complex produces the deep-blue, metal–metal bonded PtIII2 analog (3) with a rarely encountered unsymmetrical coordination across the Pt-Pt bond. All three complexes have been characterized by single crystal X-ray structure determination, 1H-NMR, IR, and UV-vis-NIR spectroscopic methods. The XPS spectra of the PtII2 and PtIII2 species are also reported. Density functional theory calculations were carried out to investigate the electronic structure, spectroscopic properties, and chemical bonding of the new complexes. The calculated natural population analysis charges and Wiberg bonding indices indicate a weak σ-interaction in the case of 2 and a formal Pt-Pt single bond in 3.

Polymorphs, Solvatomorphs, Hydrate, and Perhydrate of Dabrafenib

Crystal form screening of the anticancer drug dabrafenib (DBF) was performed using a wide range of nonpolar aprotic, polar aprotic, and polar protic solvents. Extensive crystallization in these solvent systems produced three crystal forms (I, II, and III) of the drug, a monohydrate, an isomorphous peroxo solvate, and eight different solvates with ethyl acetate, dichloromethane, chloroform, carbon tetrachloride, 1,1,2,2-tetrachloroethane, tetrachloroethylene, benzene, and anisole of DBF. Surprisingly no solvates were crystallized with the alcohol solvents attempted. The novel crystalline forms were characterized by single-crystal X-ray diffraction (SC-XRD) or structure determination from powder data (SDPD). The neutral drug derived from the mesylate salt of DBF by neutralization (form Ia) and the crystallized form I exhibited almost a similar powder XRD line pattern but their differential scanning calorimetry (DSC) thermograms comparison showed significant differences. Thus, the structure of microcrystalline powder form Ia was solved from SDPD reflections and showed the same molecular packing but different conformational strain compared to form I (structure by SC-XRD). The relative stability of the drug polymorphs was calculated using dispersion-corrected density functional theory with an intramolecular conformational energy correction. The calculations suggest that form II is the most stable polymorph and form III, form I, and form Ia are progressively less stable. Residual water content analysis of the isomorphous peroxosolvate showed that it is a mixed hydrate/peroxosolvate with ∼9.5% water occupancy quantified by 31P nuclear magnetic resonance analysis of the peroxosolvate content using triphenylphosphine oxide. The supramolecular analysis and molecular packing of DBF crystal forms suggest that the molecule has a propensity to form solvates with aprotic solvents and more specifically with chlorohydrocarbons. With its high molecular flexibility, prolific solvate potential, and drug polymorphism, the present work opens the opportunity for further solid-form landscape study of the popular anticancer drug DBF.

Nanocapsules of unprecedented internal volume seamed by calcium ions.

The inception of an unprecedented class of voluminous Platonic solids displaying hierarchical geometry based on pyrogallol[4]arene moieties seamed by divalent calcium ion is described. Single-crystal X-ray structural determination has established the highly conserved geometry of two original Ca2+-seamed nanocapsules to be essentially cubic in shape with C-ethylpyrogallol[4]arene units located along the twelve edges of the cube which are then bridged by metallic polyatomic cations ([Ca4Cl]7+ or [Ca(HCO2)Na4]5+) at the six cube faces. The accessible volume of the nanocapsules is ca. 3500 Å3 and 2500 Å3 and is completely isolated from the exterior of the capsules. These remarkable nanocapsule discoveries cast a spotlight on a marginalized area of synthetic materials chemistry and encourage future exploration of diversiform supramolecular assemblies, networks, and capsules built on calcium, with clear benefits deriving from the intrinsic biocompatibility of calcium. Finally, a proof-of-concept is demonstrated for fluorescent reporter encapsulation and sustained release from the calcium-seamed nanocapsules, suggesting their potential as delivery vehicles for drugs, nutrients, preservatives, or antioxidants.

Modulation of iron spin states in highly distorted iron(III) porphyrins: H-bonding interactions and implications in hemoproteins.

A family of five- and six-coordinated Fe-porphyrins which enable us to scrutinize the effects of non-covalent interactions on the out-of-plane displacement of iron and its spin-states and axial ligand orientation in a single distorted macrocyclic environment has been reported. Combined analysis using single-crystal X-ray structure determination and EPR spectral investigation revealed the stabilization of the high-spin state of iron in the five-coordinate complex FeIII(TPPBr8)(OCHMe2), while six-coordinate complexes [FeIII(TPPBr8)(MeOH)2]ClO4, [FeIII(TPPBr8)(H2O)2]ClO4 and [FeIII(TPPBr8)(1-MeIm)2]ClO4 stabilize admixed-high, admixed-intermediate and low-spin states, respectively. The H-bonding interactions between the weak axial H2O/MeOH and perchlorate anion resulted in an elongation of the Fe-O bond which eventually shortened the Fe-N(por) distances leading to the stabilization of the admixed spin state of iron which, otherwise, stabilizes the high-spin (S = 5/2) state only. In addition, the iron atom in [FeIII(TPPBr8)(H2O)2]ClO4 is displaced by 0.02 Å towards one of the water molecules engaged in the H-bonding interactions leading to two different Fe-O (H2O) distances of 2.098(8) and 2.122(9) Å. In contrast, iron in [FeIII(TPPBr8)(MeOH)2]ClO4 sits on the plane of the porphyrin since both the axial methanol units are engaged in similar H-bonding interactions with the ClO4- ion. Moreover, the X-ray structure of low-spin FeII(TPPBr8)(1-MeIm)2 revealed a dihedral angle of 63.0° between two imidazoles which deviates largely from the expected angle of 90° (perpendicular orientations) since the axial imidazole protons are engaged in strong intermolecular C-H⋯π interactions which thereby restrict the axial ligand movement. The complex also displays the shortest Fe-N(1-MeIm) bond along with smallest dihedral angles of 7.8° and 22.4° between the axial imidazole ring and the closest Fe-Np axis due to strong π-interactions between iron and the axial imidazole ligand. Our work highlights the influence of non-covalent interactions on the out-of-plane displacement and spin state of iron and axial ligand orientations which are indeed important steps in the functioning of various hemoproteins.

Chlorinated polyhedral selenaboranes revisited by joint experimental/computational efforts: the formation of closo-1-SeB9Cl9 and the crystal structure of closo-SeB11Cl11.

The recent success in the formation of chlorinated telluraboranes and the reactivities of pnictogenaboranes prompted us to re-examine the vacuum co-pyrolysis of B2Cl4 with Se2Cl2 at various molar ratios and temperatures in order to search for the generation of other polyhedral selenaboranes than closo-SeB5Cl5 (1a) and closo-SeB11Cl11 (1b), the latter being observed earlier. Interestingly, a new compound with the elemental composition SeB9Cl9 (2) was detected, this time by high- and low-resolution mass spectrometry. Further characterization by 1- and 2-D 11B-NMR spectroscopy suggests that 2 should adopt a closed bicapped square-antiprismatic geometry with selenium at the apical position. Moreover, vacuum sublimation gave suitable crystals of 1b, which were subjected to single-crystal X-ray structure determination. Crystallographic data analysis confirmed that 1b, consistent with its 26 skeletal electron count, adopts a distorted icosahedral structure close to the symmetry of C5v. Computations at the DFT-D3 level have revealed that 33% of the total computed binding motifs in the grown 1b crystals are due to the very strong chalcogen bonding. Moreover, SAPT decomposition has shown that the bonding motifs in the crystals are stabilized mainly by dispersion and electrostatic terms. Homodecoupling and high resolution 11B NMR and 77Se NMR experiments have resolved both coupling constants 1J(11B11B) and 1J(77Se11B) as well as the 77Se chemical shift of 1a and 1b, which are in reasonable agreement with the corresponding computed values. The computed 11B chemical shifts of 2 were determined by the well-established DFT/GIAO/NMR structural tool based on its B3LYP/6-311+G** internal coordinates. They agree well with the experimental values and provide a good representation of the molecular structure of 2 in solution. The extraordinary downfield 11B NMR chemical shift of B(10) in 2 has been ascribed to the intensive paramagnetic contribution to the shielding tensor in this bicapped square-antiprismatic motif. Calculations of the synproportionation free energies of smaller (n - 1) closo-selenaboranes with larger-sized (n + 1) ones support the extraordinary stability of octahedral, bicapped square-antiprismatic and icosahedral closo motifs in the SeBnCln family (n = 4-12).

SYNTHESES AND CRYSTAL STRUCTURES OF COPPER(II) AND ZINC(II) COMPLEXES DERIVED FROM 5-BROMO-2-((CYCLOPROPYLIMINO)METHYL)PHENOL WITH ANTIBACTERIAL ACTIVITY

Four new complexes of copper(II) and zinc(II), [Cu2L4] (1), [Cu2L2(N(CN)2)2]n (2), [Zn(HL)2I2] (3) and [Zn(HL)2(NCS)2] (4), where L is 5-bromo-2-((cyclopropylimino)methyl)phenolate, HL is the zwitterionic form of 5-bromo-2-((cyclopropylimino)methyl)phenol, were synthesized and characterized by elemental analysis and IR and UV-Vis spectroscopy. Structures of the complexes were further confirmed by single crystal X-ray structure determination. Complex 1 is a phenolate bridged dinuclear copper(II) compound, with the Cu atom in square pyramidal coordination. Complex 2 is a phenolate and dicyanamide bridged polynuclear copper(II) compound, with the Cu atom in square pyramidal coordination. Complexes 3 and 4 are mononuclear zinc(II) compounds, with the Zn atoms in tetrahedral coordination. The compounds were assayed for their antimicrobial activities. Complexes 1 and 2 have the most activities on B. subtilis, with MIC values of 1.2 μg mL–1.

Ferrocenyl-based di- and trinuclear lanthanide complexes: solid state structures, (spectro)electrochemical and DFT studies.

Dinuclear and trinuclear ferrocenylcarboxylato-bridged lanthanide complexes of type [Ln(μO:κ2OO'-O2CFc)(O2CFc)2(H2O)(dmf)]2·(dmf)2 (Ln = Sm (2), Eu (3), Gd (4), Tb (5); Fc = Fe(η5-C5H4)(η5-C5H5)), and novel [Bu4N][Ln3(μ-O2CFc)3(μO:κ2OO'-O2CFc)3(O2CFc)3(μ3-OH)]·[Bu4N]Cl (Ln = Gd (6), Tb (7)) were prepared by the reaction of [LnCl3·6H2O] (synthesis of 2-5) or LnCl3 (synthesis of 6, 7) with FcCO2H (1) in the ratio of 1 : 3. As evidenced by single crystal X-ray structure determination, in 2-5 the lanthanide ions are connected by symmetric FcCO2 units. In addition, two ferrocenylcarboxylato groups are μ-bridged to LnIII. Each LnIII ion is coordinated by nine oxygen donor atoms derived from one H2O, one dmf and three carboxylates. The latter are found in chelating κ2 and bridging μ,κ3 coordination modes. Complexes 6 and 7 assemble three LnIII cores around a central μ3-netting hydroxide and nine FcCO2 entities. A combination of κ2, μ,κ2 and μ,κ3 coordination modes results in an eight-fold coordination sphere for each metal, which is best described as bicapped trigonal prismatic. IR spectroscopy confirms the chelating and bridging motifs. Electrochemical studies of complexes 2-7via cyclic voltammetry (CV) and square-wave voltammetry (SWV) showed one redox event between E°' = 250 and 260 mV vs. FcH/FcH+ for 2-5 with all six FcCO2 redox events superimposed. Complexes 6 and 7 show a total of three events in the CV with the oxidations of the nine FcCO2 units occurring in close proximity. Deconvolution of individual redox events correlates well with the mononuclear complex [Bu4N][Gd(O2CFc)4]. UV-Vis/NIR spectroelectrochemical measurements of 7 did not reveal electron transfer between either Fc units, nor the coordinated lanthanides and resembled the absorption behavior of [Bu4N][Tb(O2CFc)4]. DFT (Density Functional Theory) calculations on the B3LYP def2-TZVP level of theory were carried out to assign the order of redox events in 6 showing that the spatial distance towards the most recent redox center, instead of the binding mode, is decisive.

SYNTHESIS, XRD, DFT/HF, AND MOLECULAR DOCKING INVESTIGATIONS OF 4-(TERT-BUTYL)-4-METHOXY-1,1- BIPHENYL (4-TBMB)

Biphenyl is a preferred scaffold that can be found in a number of drugs due to its ability to bind with a wide variety of proteins having high specificity. In order to have better insights into the structure and properties of such useful molecules, the title compound is synthesized by standard chemical means. Direct methods were employed for X-ray structure determination. The molecular geometry has been optimized using the Hatree-Fock and Density functional theory methods. The electrostatic potential map (MEP) and molecular orbitals (FMOs) have been computed using the density functional theory. The theoretical characterization including HS and interaction contribution reveals the existence of a substantial number of H...H (64.3%) contacts. The three-dimensional energy frameworks have been used for the total interaction energy analysis. The molecular docking study with oncogene protein (PDB ID: 5P21) suggests that the molecule may lead to the development of some novel drugs for the treatment of cancer.