Wild Potato Species Research Articles

Physiology of tuber dormancy and its mechanism of release in potato

The tuber dormancy is an important aspect of tuber’s physiological age and begins with tuber initiation. It is largely dependent on genotype, environmental conditions, and tuber age. The group Phureja among diploid potatoes, has a very short or no tuber dormancy while the tubers of Solanum jamesii, a wild potato species, may remain dormant for more than eight years and have the tendency to sprout in favourable conditions. The dormancy breakage in potato is accompanied by many physiological changes such as changes in the ratios of abscisic acid (ABA)/ cytokinin and ABA/ gibberellic acid (GA3), catalase inhibition and accumulation of soluble sugars. These all changes are interlinked and occur in the same time frame. The dormant buds have 77% of their nuclei in the growth phase (G1), compared to only 13% in the preparation phase for mitosis (G2), resulting in slower development of active buds. This paper reviews various factors involved in natural and forced dormancy breakage of potato tuber in relation to their use as seed potatoes immediately after harvesting and implementation of different exogenous dormancy breaking methods like cold pre-treatment, growth regulators, electric current and irradiation to induce sprouting in potatoes.

Developing self-compatible diploid potato germplasm through recurrent selection

Most wild and cultivated diploid potato species are self-incompatible, preventing inbreeding and promoting outcrossing. To generate diploid inbred lines, the tuber bearing self-compatible species Solanum chacoense (M6 line) has been used to overcome self-incompatibility. In this study, self-compatibility was introgressed from a set of four diploid self-compatible (SC) donor lines with S. chacoense background into eight introgression species lines to develop a multi-species potato germplasm pool using a recurrent selection (RS) breeding strategy. Concurrently, tuber and adaptation-related traits were selected under Michigan field conditions prior to self-compatibility assessment. After six cycles of RS, we observed a significant increase in self-compatibility (16% in cycle 0–86% in cycle 5) inheritance and improvement of tuber-related traits. Reproductive fitness was increased, reducing male sterility from 32% in cycle 0 to 0% in cycle 5. Progeny with no-flowers decreased from 19 to 3% from RS cycles 0 to cycle 5. Additionally, 4,885 single-nucleotide polymorphism (SNPs) markers were used to access the linkage disequilibrium (LD), heterozygosity, and population structure over the RS population. SNP heterozygosity moderately decreased through the six cycles of RS cycles. Hierarchical clustering and Principal Components Analysis showed that selections become more uniform as the cycles advanced and that LD had been reduced across each potato chromosome. We observed significant increase in earliness for vine maturity in cycle 4. The SC germplasm developed in this study can be used to introgress self-compatibility, select tuber-related traits, and develop inbred lines in F1 hybrid programs using a genetically diverse diploid germplasm.

Transcriptional and proteomic insights into phytotoxic activity of interspecific potato hybrids with low glycoalkaloid contents

BackgroundGlycoalkaloids are bioactive compounds that contribute to the defence response of plants against herbivore attack and during pathogenesis. Solanaceous plants, including cultivated and wild potato species, are sources of steroidal glycoalkaloids. Solanum plants differ in the content and composition of glycoalkaloids in organs. In wild and cultivated potato species, more than 50 steroidal glycoalkaloids were recognized. Steroidal glycoalkaloids are recognized as potential allelopathic/phytotoxic compounds that may modify the growth of target plants. There are limited data on the impact of the composition of glycoalkaloids on their phytotoxic potential.ResultsThe presence of α-solasonine and α-solamargine in potato leaf extracts corresponded to the high phytotoxic potential of the extracts. Among the differentially expressed genes between potato leaf bulks with high and low phytotoxic potential, the most upregulated transcripts in sample of high phytotoxic potential were anthocyanin 5-aromatic acyltransferase-like and subtilisin-like protease SBT1.7-transcript variant X2. The most downregulated genes were carbonic anhydrase chloroplastic-like and miraculin-like. An analysis of differentially expressed proteins revealed that the most abundant group of proteins were those related to stress and defence, including glucan endo-1,3-beta-glucosidase acidic isoform, whose expression level was 47.96× higher in potato leaf extract with low phytotoxic.ConclusionsThe phytotoxic potential of potato leaf extract possessing low glycoalkaloid content is determined by the specific composition of these compounds in leaf extract, where α-solasonine and α-solamargine may play significant roles. Differentially expressed gene and protein profiles did not correspond to the glycoalkaloid biosynthesis pathway in the expression of phytotoxic potential. We cannot exclude the possibility that the phytotoxic potential is influenced by other compounds that act antagonistically or may diminish the glycoalkaloids effect.

Screening of Wild Potatoes Identifies New Sources of Late Blight Resistance.

Late blight (LB) of potato is considered one of the most devastating plant diseases in the world. Most cultivated potatoes are susceptible to this disease. However, wild relatives of potatoes are an excellent source of LB resistance. We screened 384 accessions of 72 different wild potato species available from the U.S. Potato GeneBank against the LB pathogen Phytophthora infestans in a detached leaf assay (DLA). P. infestans isolates US-23 and NL13316 were used in the DLA to screen the accessions. Although all plants in 273 accessions were susceptible, all screened plants in 39 accessions were resistant. Resistant and susceptible plants were found in 33 accessions. All tested plants showed a partial resistance phenotype in two accessions, segregation of resistant and partial resistant plants in nine accessions, segregation of partially resistant and susceptible plants in four accessions, and segregation of resistant, partially resistant, and susceptible individuals in 24 accessions. We found several species that were never before reported to be resistant to LB: Solanum albornozii, S. agrimoniifolium, S. chomatophilum, S. ehrenbergii, S. hypacrarthrum, S. iopetalum, S. palustre, S. piurae, S. morelliforme, S. neocardenasii, S. trifidum, and S. stipuloideum. These new species could provide novel sources of LB resistance. P. infestans clonal lineage-specific screening of selected species was conducted to identify the presence of RB resistance. We found LB resistant accessions in Solanum verrucosum, Solanum stoloniferum, and S. morelliforme that were susceptible to the RB overcoming isolate NL13316, indicating the presence of RB-like resistance in these species.

The use of molecular cytogenetic methods in the investigation of distant potato hybrids

This paper reviews the results of studies of interspecies hybridization, polyploidization, as well as phylogenetic relationships ofSolanumspecies and members of closely related taxa by such molecular cytogenetic techniques as genomic (GISH) and fluorescent (FISH) DNA-DNAin situhybridization. The latter was used to determine the genomic composition and origin of wild species of thePetotasection, while the FISH technique was used for detecting intergenomic collinearity. The combination of these two types of research made possible a comparative analysis of karyotypes and genomes, thus allowing a better understanding of the meiotic interchromosomal interactions in hybrids. This review primarily focuses on the studies of wild allopolyploid potato species and artificially created intergeneric and interspecific hybrids of the genusSolanumand their offspring.

Genome size variation in natural populations of wild potato species from west Argentina

Wild potato species (Solanum, section Petota) have great ecological adaptability and represent essential genetic resources for the improvement of the third most important food crop worldwide. From more than 100 species described for this section, the genome size has been established for only 12. The aims of this work were to: contribute data on the C-values for Solanum species; assess the degree of interspecific and intraspecific genome size variation; investigate correlations between genome size and bioclimatic variables; and determine whether the data for genome size are helpful for delineating taxa. The DNA contents of 97 genotypes from 28 populations and two accessions of seven wild potato species, including diploids, triploids, and tetraploids, were measured by flow cytometry. Statistical genome size differences within and among species were found. The natural interploidal hybrid Solanum × rechei had the highest intraspecific genome size variation. The tetraploid S. acaule presented the smallest monoploid genome size (0.72 pg), whereas the triploid cytotype of S. microdontum was the largest (0.82 pg). Correlations among bioclimatic and geographic variables and genome size were found in most species. The roles of hybridisation and polyploidisation events on genome size variability are discussed.

Assessing under-Estimation of Genetic Diversity within Wild Potato (Solanum) Species Populations

Genebanks seek to understand the partitioning of genetic diversity among species, populations, and individuals in their collections since this informs decisions for adopting the most effective sampling strategy. Recent reports have suggested that diploid wild species have much less heterogeneity within populations than cultivated forms. We here review past empirical phenotypic trait variation data and examine previous and new DNA marker datasets. We also examine simulation datasets and calculations designed to mimic the effects of artificial biases against wild species heterozygosity due to ascertainment, ploidy, and allele frequencies. Trait data suggests large practical variation exists within populations. Similarly, DNA markers on multiple individuals within diploid wild potato species populations show that substantial heterogeneity in a species is partitioned within populations. Simulations illustrate that biases due to ascertainment, ploidy, and allele frequencies account for much of the apparent homogeneity of wild diploid potato species.

Detection of Novel QTLs for Late Blight Resistance Derived from the Wild Potato Species Solanum microdontum and Solanum pampasense.

Wild potato species continue to be a rich source of genes for resistance to late blight in potato breeding. Whilst many dominant resistance genes from such sources have been characterised and used in breeding, quantitative resistance also offers potential for breeding when the loci underlying the resistance can be identified and tagged using molecular markers. In this study, F1 populations were created from crosses between blight susceptible parents and lines exhibiting strong partial resistance to late blight derived from the South American wild species Solanum microdontum and Solanum pampasense. Both populations exhibited continuous variation for resistance to late blight over multiple field-testing seasons. High density genetic maps were created using single nucleotide polymorphism (SNP) markers, enabling mapping of quantitative trait loci (QTLs) for late blight resistance that were consistently expressed over multiple years in both populations. In the population created with the S. microdontum source, QTLs for resistance consistently expressed over three years and explaining a large portion (21–47%) of the phenotypic variation were found on chromosomes 5 and 6, and a further resistance QTL on chromosome 10, apparently related to foliar development, was discovered in 2016 only. In the population created with the S. pampasense source, QTLs for resistance were found in over two years on chromosomes 11 and 12. For all loci detected consistently across years, the QTLs span known R gene clusters and so they likely represent novel late blight resistance genes. Simple genetic models following the effect of the presence or absence of SNPs associated with consistently effective loci in both populations demonstrated that marker assisted selection (MAS) strategies to introgress and pyramid these loci have potential in resistance breeding strategies.

New Findings on the Resistance Mechanism of an Elite Diploid Wild Potato Species JAM1-4 in Response to a Super Race Strain of Phytophthora infestans.

Late blight is a devastating potato disease worldwide, caused by Phytophthora infestans. The P. infestans strain 2013-18-306 from Yunnan is a "supervirulent race" that overcomes all 11 known late blight resistance genes (R1 to R11) from Solanum demissum. In a previous study, we identified a diploid wild-type potato JAM1-4 (S. jamesii) with high resistance to 2013-18-306. dRenSeq analysis indicated the presence of novel R genes in JAM1-4. RNA-Seq was used to analyze the late blight resistance response genes and defense regulatory mechanisms of JAM1-4 against 2013-18-306. Gene ontology enrichment and KEGG pathway analysis showed that many disease-resistant pathways were significantly enriched. Analysis of differentially expressed genes (DEGs) revealed an active disease resistance mechanism of JAM1-4, and the essential role of multiple signal transduction pathways and secondary metabolic pathways comprised of SA-JA-ET in plant immunity. We also found that photosynthesis in JAM1-4 was inhibited to promote the immune response. Our study reveals the pattern of resistance-related gene expression in response to a super race strain of potato late blight and provides a theoretical basis for further exploration of potato disease resistance mechanisms, discovery of new late blight resistance genes, and disease resistance breeding.

Extracts of the Wild Potato Species Solanum chacoense on Breast Cancer Cells: Biochemical Characterization, In Vitro Selective Cytotoxicity and Molecular Effects

Solanum chacoense (wild potato) is intensively used in breeding, its biochemical profile and putative human health-related traits being transferred into potato cultivars aimed for consumption. The goal of this study was to evaluate the biochemical profile and the anti-tumor potential of methanolic extracts obtained from S. chacoense leaves and tubers against three breast cancer cell lines in comparison to healthy endothelial cells (HUVEC). The biochemical profile of the extracts was determined by HPLC-PDA/-ESI+-MS and ITEX/GC-MS, the selective cytotoxicity by MTT assay whereas RT-qPCR was used to evaluate the expression of proliferation- and apoptosis-related genes. Both extracts proved to be rich in phenolic acids and volatile compounds, the leaf extract also containing glycoalkaloids. Both extracts proved to be cytotoxic for breast cancer cell lines, with IC50 values varying between 132.9 and 390.7 µg/ml. Both extracts had selective cytotoxicity against MCF7 cell line in comparison to HUVECs (selectivity coefficients >2.3). The treatment with the extracts induced overexpression of the pro-apoptotic gene BAX¸ down-regulation of the anti-apoptotic gene BCL-2 and the pro-proliferation genes NFkB, CCND1, and STAT3. Thus S. chacoense extracts proved to be rich in compounds with anticancer proprieties and are capable of inducing selective cytotoxicity on MCF7 cell line.

The Histological, Effectoromic, and Transcriptomic Analyses of Solanum pinnatisectum Reveal an Upregulation of Multiple NBS-LRR Genes Suppressing Phytophthora infestans Infection.

Utilization of disease resistance components from wild potatoes is a promising and sustainable approach to control Phytophthora blight. Here, we combined avirulence (Avr) genes screen with RNA-seq analysis to discover the potential mechanism of resistance in Mexican wild potato species, Solanum pinnatisectum. Histological characterization displayed that hyphal expansion was significantly restricted in epidermal cells and mesophyll cell death was predominant, indicating that a typical defense response was initiated in S. pinnatisectum. Inoculation of S. pinnatisectum with diverse Phytophthora infestans isolates showed distinct resistance patterns, suggesting that S. pinnatisectum has complex genetic resistance to most of the prevalent races of P. infestans in northwestern China. Further analysis by Avr gene screens and comparative transcriptomic profiling revealed the presence and upregulation of multiple plant NBS-LRR genes corresponding to biotic stresses. Six NBS-LRR alleles of R1, R2, R3a, R3b, R4, and Rpi-smira2 were detected, and over 60% of the 112 detected NLR proteins were significantly induced in S. pinnatisectum. On the contrary, despite the expression of the Rpi-blb1, Rpi-vnt1, and Rpi-smira1 alleles, fewer NLR proteins were expressed in susceptible Solanum cardophyllum. Thus, the enriched NLR genes in S. pinnatisectum make it an ideal genetic resource for the discovery and deployment of resistance genes for potato breeding.

WRKY genes family study reveals tissue-specific and stress-responsive TFs in wild potato species

Wild potatoes, as dynamic resource adapted to various environmental conditions, represent a powerful and informative reservoir of genes useful for breeding efforts. WRKY transcription factors (TFs) are encoded by one of the largest families in plants and are involved in several biological processes such as growth and development, signal transduction, and plant defence against stress. In this study, 79 and 84 genes encoding putative WRKY TFs have been identified in two wild potato relatives, Solanum commersonii and S. chacoense. Phylogenetic analysis of WRKY proteins divided ScWRKYs and SchWRKYs into three Groups and seven subGroups. Structural and phylogenetic comparative analyses suggested an interspecific variability of WRKYs. Analysis of gene expression profiles in different tissues and under various stresses allowed to select ScWRKY045 as a good candidate in wounding-response, ScWRKY055 as a bacterial infection triggered WRKY and ScWRKY023 as a multiple stress-responsive WRKY gene. Those WRKYs were further studied through interactome analysis allowing the identification of potential co-expression relationships between ScWRKYs/SchWRKYs and genes of various pathways. Overall, this study enabled the discrimination of WRKY genes that could be considered as potential candidates in both breeding programs and functional studies.

Threat of Brown Rot of Potato and Existing Resistance

Brown rot of potatoes caused by Ralstonia solanacearum is common in developing countries. Historically, brown rot losses in the United States have been restricted to southern states. This trend will most likely change with new Ralstonia introductions and temperature variability. A cold tolerant Ralstonia strain was used in this study to compare resistance between 18 wild accessions from eight species, nine accessions from the International Potato Center (CIP), and seven common US cultivars. Testing was done at both 18 °C and 30 °C. Of the wild potato species tested, S. commersonii and S. microdontum were the most resistant. CIP accessions varied from moderately resistant to very resistant. Four of the US cultivars were also moderately resistant. With certain accessions temperature played a role in resistance with high temperatures usually increasing severity of disease and cool temperatures promoting the occurrence of asymptomatic plants. The resistance observed appears to be partial, multigenic resistance.

Homologs of vacuolar invertase inhibitor INH2 in tuber-bearing wild potato species and Solanum tuberosum: gene polymorphism and co-expression with saccharolytic enzyme genes in response to cold stress

Wild tuber-bearing species are commonly used as a source of valuable traits to develop new potato cultivars. One of the trends in potato breeding is elimination of cold-induced sweetening, which depends on the balance between activities of saccharolytic enzymes (vacuolar invertase PAIN-1 and sucrose synthase SUS4 that hydrolyze sucrose) and vacuolar invertase inhibitor INH2 that regulates the PAIN-1 activity. To clarify the mechanisms underlying cold resistance, we investigated INH2 polymorphism and tissue-specific expression, and co-expression profiles of INH2, PAIN-1, and SUS4 in wild tuber-bearing potatoes and Solanum tuberosum cultivars. Novel INH2 homologs were identified in eight wild species and four cultivars. Structural analysis predicted an N-terminal signal peptide and showed that nucleotide and amino acid polymorphisms (13.09% and 18.91%, respectively) did not affect the INH2 tertiary structure, suggesting that the INH2 function may be conserved in potato both at the intra- and inter-specific levels. INH2 and PAIN-1 mRNA were detected in buds, flowers, leaves, stems, roots, and tubers of S. tuberosum cv. Nadezhda, showing the highest (INH2) and lowest (PAIN-1) levels in the roots. During cold storage, tubers of four cultivars accumulated glucose and fructose, while the sucrose content changed insignificantly; INH2, PAIN-1, and SUS4 co-expression patterns in freshly harvested and cold-stored tubers differed among the cultivars. Cold exposure also caused distinct effects on INH2, PAIN-1, and SUS4 co-expression patterns in the leaves of four wild species differing in cold resistance. These data indicate that cold response in potato may depend on specific combinations of INH2, PAIN-1, and SUS4 activities.

Development of chromosome-specific markers for a study on introgressive hybridization of potato with the wild Mexican allotetraploid species Solanum stoloniferum Schltdl

In order to involve valuable germplasm of the wild Mexican allotetraploid potato species Solanum stoloniferum Schltdl. (genomic composition ААВВ) into breeding, pentaploid interspecific hybrids (ААAAВ) with cultivated potato S. tuberosum L. (АААА) and their backcross progenies are usually used. Homologous synapsis in meiosis of such hybrids is expected only between chromosomes of the A subgenome, therefore a question arose about a possibility of introgressing genetic material of the subgenome B into the A genome of cultivated potato. In this connection, development of various schemes for the B subgenome introgression into the genome of cultivated potato is considered as a topical issue. The previous research has yielded four schemes of S. stoloniferum involvement into breeding, which imply backcrossing with cultivated potato of the following interspecific hybrids: (1) hexaploids (genomic composition ААААВВ, the conventional introgression scheme), (2) tetraploids (putatively, АААВ), (3) self-pollination progeny of a 4x hybrid and (4) pentaploid hybrids with a putative genome composition of АААВВ. The present paper presents the first results of the development of chromosome-specific DNA markers for the identification of S. stoloniferum chromosomes in interspecific hybrids. An S. stoloniferum accession PI 205522 with a high degree of resistance to late blight and PVY had been found to possess several DNA-markers of the R-genes conferring resistance to these pathogens and was used in hybridization as a promising parent. A set of 23 SSR- and CAPS markers with the known chromosome location in S. tuberosum was generated. These markers detect polymorphism between parent genotypes, i.e., the diploid clone IGC 10/1.21 of cultivated potatoes S. tuberosum, and accession PI 205522 of S. stoloniferum. All the markers specific for the wild species were found in triploid (ААВ) and pentaploid (АААВВ) hybrids of S. stoloniferum × S. tuberosum. This set of markers will be used for efficiency assessment of different schemes for S. stoloniferum genetic material introgression into the obtained BC2-BC3 generations after crossing the interspecific hybrids with cultivated potato.

Non-GMO potato lines, synthesizing increased amylose and resistant starch, are mainly deficient in isoamylase debranching enzyme.

Summary Solanum tuberosum potato lines with high amylose content were generated by crossing with the wild potato species Solanum sandemanii followed by repeated backcrossing to Solanum tuberosum lines. The trait, termed increased amylose (IAm), was recessive and present after three generations of backcrossing into S. tuberosum lines (6.25% S. sandemanii genes). The tubers of these lines were small, elongated and irregular with small and misshaped starch granules and high sugar content. Additional backcrossing resulted in less irregular tuber morphology, increased starch content (4.3%–9.5%) and increased amylose content (29%–37.9%) but indifferent sugar content. The amylose in the IAm starch granules was mainly located in peripheral spots, and large cavities were found in the granules. Starch pasting was suppressed, and the digestion‐resistant starch (RS) content was increased. Comprehensive microarray polymer profiling (CoMPP) analysis revealed specific alterations of major pectic and glycoprotein cell wall components. This complex phenotype led us to search for candidate IAm genes exploiting its recessive trait. Hence, we sequenced genomic DNA of a pool of IAm lines, identified SNPs genome wide against the draft genome sequence of potato and searched for regions of decreased heterozygosity. Three regions, located on chromosomes 3, 7 and 10, respectively, displayed markedly less heterozygosity than average. The only credible starch metabolism‐related gene found in these regions encoded the isoamylase‐type debranching enzyme Stisa1. Decreased expression of mRNA (>500 fold) and reduced enzyme activity (virtually absent from IAm lines) supported Stisa1 as a candidate gene for IAm.

Differences in the Amylase Inhibitor Gene SbAI Expression in Potato during Long-Term Tuber Cold Storage and in Response to Short-Term Cold Stress

Expression analysis of the amylase inhibitor gene SbAI in five potato cultivars (S. tuberosum) revealed SbAI downregulation in tubers during long-term (seven months) cold storage. Estimation of SbAI gene expression and starch content in leaves of S. tuberosum cv. Nadezhda and four wild potato species (Solanum sect. Petota) showed a dramatic increase in SbAI transcription accompanied by starch content drop in response to short-term cold stress.

LATE BLIGHT RESISTANCE OF WILD POTATO SPECIES UNDER FIELD CONDITIONS IN THE NORTHWEST OF RUSSIA

Background. Despite the great efforts made by breeders, late blight remains a paramount cause of significant potato harvest losses. Introgression of various resistance genes from wild Solanum L. species is the main method to increase the resistance in potato cultivars. Field resistance is considered to be more durable than those induced by the action of single R genes. To this end, resistance sources should be selected from а wide range of species under severe natural infection.Material and methods. As the material for evaluation, 1141 accessions of 99 wild potato species belonging to 15 taxonomic series according to the system of J. Hawkes were used. Each accession was assessed for 3–5 years. A 1–9 point scale was employed to score the damage of plants every week starting from the first symptoms of the disease, where 9 meant the absence of any symptoms, and 1 the entirely damaged plant. The plants scoring 6 to 9 points were considered resistant.Results and conclusions. As a result of the long-term field observations, wild potato species, represented in the current evaluation by numerous accessions, were characterized for foliar resistance to late blight; individual introductions resistant to late blight were also identified. Some of those studied in the 1980s showed high resistance in the end of the 1990s through the 2000s. The highest percentage of resistant accessions/species was identified among the species with areas of distribution in Mexico. A group of Central American species and large part of species with areas of distribution in South America expressed high level of interspecific polymorphism in foliar resistance to late blight.

Detection of Adaptive Genetic Diversity in Wild Potato Populations and Its Implications in Conservation of Potato Germplasm

A better understanding on how genetic diversity is structured at natural habitats can be helpful for exploration and acquisition of plant germplasm. Historically, studies have relied on DNA markers to elucidate potato genetic diversity. Current advances in genomics are broadening applications allowing the identification of markers linked to genomic regions under selection. Those markers, known as adaptive markers, unlock additional ways to value and organize germplasm diversity. For example, conservation priorities could be given to germplasm units containing markers associated to unique geographic identity, and/or linked to traits of tolerance to abiotic stresses. This study investigated if adaptive marker loci were possible to be identified in a large AFLP marker dataset of ninety-four populations of the wild potato species S. fendleri. These populations originated from six different mountain ranges in southern Arizona, USA. A total of 2094 polymorphic AFLP markers were used to conduct genetic diversity analyses of populations and mountain ranges. Adaptive markers were detected using Bayesian methods which distinguished marker loci departing significantly from frequencies expected under neutral models of genetic differentiation. This identified 16 AFLP loci that were considered to be adaptive. To contrast diversity parameters generated with each set of markers, analyses that included all the 2094 AFLP markers, and only the 16 adaptive markers were conducted. The results showed that both were efficient for establishing genetic associations among populations and mountain ranges. However, adaptive markers were better on revealing geographic patterns and identity which would suggest these markers were linked to selection at the natural sites. An additional test to determine if adaptive markers associated to climate variables found two loci associated to specific climate variables in populations from different regions but sharing similar environmental structure. The distribution of adaptive markers among populations revealed that only two were needed to build a core subset able to keep all the markers. This preliminary assessment shows that adaptive genetic diversity could offer an additional way to measure diversity in potato germplasm and to set up options for conservation and research.

The Opposite Effect of Low Temperature on the Pho1a Starch Phosphorylase Gene Expression in Solanum tuberosum L. Tubers and Petota Species Leaves

Starch turnover is important for plant response to abiotic stresses and plastidic starch phosphorylase Pho1a is a key enzyme regulating starch metabolism. In this study, we identified Pho1a coding sequences in seven wild tuber-bearing potato species. In Solanum tuberosum cv. Nadezhda grown at normal conditions, Pho1a transcription was low; it was detected in stems, leaves, flowers, and roots. After harvest, Pho1a expression in tubers of 16 S. tuberosum cultivars was either absent or low but progressively increased during storage at +4 °C, which corresponded to an increase in the content of reducing sugars. In the leaves of both cultivated and wild potato species, exposure to short-term cold stress downregulated Pho1a expression, especially at night, and stimulated starch degradation, but there was no uniform diurnal pattern in Pho1a expression dynamics. These findings indicate that Pho1a may have different functions in storage and photosynthetic organs of potato.