Unsupervised Learning Research Articles

Using machine learning to discover traumatic brain injury patient phenotypes: national concussion surveillance system Pilot

ABSTRACT Objective The objective is to determine whether unsupervised machine learning identifies traumatic brain injury (TBI) phenotypes with unique clinical profiles. Methods Pilot self-reported survey data of over 10,000 adults were collected from the Centers for Disease Control and Prevention (CDC)’s National Concussion Surveillance System (NCSS). Respondents who self-reported a head injury in the past 12 months (n = 1,364) were retained and queried for injury, outcome, and clinical characteristics. An unsupervised machine learning algorithm, partitioning around medoids (PAM), that employed Gower’s dissimilarity matrix, was used to conduct a cluster analysis. Results PAM grouped respondents into five TBI clusters (phenotypes A-E). Phenotype C represented more clinically severe TBIs with a higher prevalence of symptoms and association with worse outcomes. When compared to individuals in Phenotype A, a group with few TBI-related symptoms, individuals in Phenotype C were more likely to undergo medical evaluation (odds ratio [OR] = 9.8, 95% confidence interval[CI] = 5.8–16.6), have symptoms that were not currently resolved or resolved in 8+ days (OR = 10.6, 95%CI = 6.2–18.1), and more likely to report at least moderate impact on social (OR = 54.7, 95%CI = 22.4–133.4) and work (OR = 25.4, 95%CI = 11.2–57.2) functioning. Conclusion Machine learning can be used to classify patients into unique TBI phenotypes. Further research might examine the utility of such classifications in supporting clinical diagnosis and patient recovery for this complex health condition.

Multi-source information contrastive learning collaborative augmented conversational recommender systems

AbstractConversational Recommender Systems (CRS) aim to provide high-quality items to users in fewer conversation rounds using natural language. Despite various attempts that have been made, there are still some problems: Previous CRS only learned item representations in a single knowledge graph and ignored item tags; information gaps exist in the same items from different knowledge graphs and information popularity both affect user preferences; system generated responses lack descriptiveness and diversity. To address these problems and fully utilize external knowledge, we propose a Multi-source Information Contrastive Learning Collaborative Augmented method ($$\textbf{MCCA}$$ MCCA ), which aims to mine the potential tag preferences of users in dialogues as well as enhance the accuracy of item representation and user preference modeling. Specifically, we utilize the obtained items and their tags to construct a new knowledge graph that incorporates movie tags. We design a Multi-source Item Fusion mechanism ($$\textbf{MIF}$$ MIF ) to bridge the information gaps between items from different knowledge graphs and then utilize unsupervised contrastive learning to enhance the items’ representation capability after MIF. Additionally, a Multi-Tag Fusion mechanism ($$\textbf{MTF}$$ MTF ) is designed to combine user-perceived information (i.e., tag popularity) and keywords obtained from reviews to co-enhance user preference representations through items and tags, and to incorporate fused item and tag features into the conversation module. Extensive experiments on two datasets show that MCCA significantly outperforms state-of-the-art methods. The source code will be available at https://github.com/lhy-cqut/MCCA.

Unsupervised complex semi-binary matrix factorization for activation sequence recovery of quasi-stationary sources

Industry 5.0 advocates for a sustainable industry, particularly in terms of energy. One of the most fundamental elements of comprehension is knowing when the systems are operated, as this is key to locating energy intensive subsystems and operations. Such knowledge is often lacking in practice. Activation statuses can be recovered from sensor data though. Some non-intrusive sensors (accelerometers, current sensors, etc.) acquire mixed signals containing information about multiple actuators at once. This paper considers different industrial settings in which the identification of binary sub-system activation sequences is sought. In this context, source signals are assumed to be quasi-stationary and they may be correlated. Existing methods either restrict these assumptions, e.g., by imposing orthogonality or noise characteristics, or lift them using additional assumptions, typically using nonlinear transforms.This paper addresses these limitations, and introduces the unsupervised complex semi-binary matrix factorization (ℂSBMF) as its main contribution. In particular, we show that the exact recovery of source activation sequences from non-intrusive sensor data is intrinsically tied to the presence of problematic phase shifts, the causes of which are detailed. A greedy algorithm is proposed, iteratively resynchronizing sources to converge towards the maximum decomposition of each operation despite these phase shifts. The ℂSBMF is verified and compared to existing techniques on synthetic use cases, then validated on experimental data with signals of different nature. To that occasion, the CAFFEINE dataset for unsupervised time series multi-label classification is introduced.

Enhanced Bearing Fault Diagnosis Through Trees Ensemble Method and Feature Importance Analysis

Abstract Purpose This research introduces a groundbreaking method for bearing defect detection. It leverages ensemble machine learning (ML) models and conducts comprehensive feature importance analysis. The key innovation is the training and benchmarking of three tree ensemble models—Decision Tree (DT), Random Forest (RF), and Extreme Gradient Boosting (XGBoost)—on an extensive experimental dataset (QU-DMBF) collected from bearing tests with seeded defects of varying sizes on the inner and outer raceways under different operating conditions. Method The dataset was meticulously prepared with categorical variable encoding and Min–Max data normalization to ensure consistent class distribution and model accuracy. Implementing the ML models involved a grid search method for hyperparameter tuning, focusing on reporting the models’ accuracy. The study also explores applying ensemble methods and using supervised and unsupervised learning algorithms for bearing fault detection. It underscores the value of feature importance analysis in understanding the contributions of specific inputs to the model’s performance. The research compares the ML models to traditional methods and discusses their potential for advanced fault diagnosis in bearing systems. Results and Conclusions The XGBoost model, trained on data from actual bearing tests, outperformed the others, achieving 92% accuracy in detecting bearing health and fault location. However, a deeper analysis of feature importance reveals that the models weigh certain experimental conditions differently—such as sensor location and motor speed. This research’s primary novelties and contributions are comparative evaluation, experimental validation, accuracy benchmarking, and interpretable feature importance analysis. This comprehensive methodology advances the bearing health monitoring field and has significant practical implications for condition-based maintenance, potentially leading to substantial cost savings and improved operational efficiency.

Active Learning for Data Quality Control: A Survey

Data quality plays a vital role in scientific research and decision-making across industries. Thus it is crucial to incorporate the data quality control (DQC) process, which comprises various actions and operations to detect and correct data errors. The increasing adoption of machine learning (ML) techniques in different domains has raised concerns about data quality in the ML field. On the other hand, ML’s capability to uncover complex patterns makes it suitable for addressing challenges involved in the DQC process. However, supervised learning methods demand abundant labeled data, while unsupervised learning methods heavily rely on the underlying distribution of the data. Active learning (AL) provides a promising solution by proactively selecting data points for inspection, thus reducing the burden of data labeling for domain experts. Therefore, this survey focuses on applying AL to DQC. Starting with a review of common data quality issues and solutions in the ML field, we aim to enhance the understanding of current quality assessment methods. We then present two scenarios to illustrate the adoption of AL into the DQC systems on the anomaly detection task, including pool-based and stream-based approaches. Finally, we provide the remaining challenges and research opportunities in this field.

Time dimension feature extraction and classification of high-dimensional large data streams based on unsupervised learning

In order to solve the problem of low accuracy of time dimension feature extraction and classification of high-dimensional large data streams, this paper proposes a time dimension feature extraction and classification algorithm of high-dimensional large data streams based on unsupervised learning. Analyze the trend of high-dimensional data flow changes under machine learning, and achieve dimensionality reduction of high-dimensional large traffic time dimensional data through local save projection. Analyze the spatial relationship between feature attributes and feature space, segment and fit high-dimensional big data streams and time dimensional feature data streams, further segment time dimensional sequences using sliding windows, and complete feature extraction through discrete dyadic wavelet transform. According to the clustering algorithm, cluster the time dimension feature data stream, calculate the cosine similarity of the feature data, model the time dimension feature stream of training samples, use the feature classification function to minimize the classification loss, and use unsupervised learning to achieve the final classification task. The test results show that this method can improve the temporal feature extraction and classification accuracy streams.

Detecting and Monitoring Artisanal Mining Operations in Semi-Arid Terrain Using Multitemporal SAR Data for InSAR Coherence Estimation and Unsupervised Classification

Abstract. The impact of artisanal mining in sub-Saharan Africa and other developing countries are often huge as they leave trails of environmental and socio-economic effects on the people and the environment. 123 Multi-temporal SAR data acquired between 2019 and 2023 was used. SARPROZ was used to co-register the images and other preprocessing steps like radiometric and geometric correction to transform the images from SAR coordinates to geographic coordinates after generating all the interferograms. A stack of the 122 coherence map was created. Unsupervised classification was implemented on the stack. Principal component analysis of dimensionality reductions method yielded a far better result than the other unsupervised cluster methods attempted, it showed a very high classification accuracy of the terrain. The principal component analysis worked by computing the covariance matrix of the stacked coherence map then performed eigen-decomposition on it to yield eigenvectors and eigenvalues, The eigenvectors corresponding to the largest eigenvalues represent the principal components. These principal components capture the directions of maximum variance, and the eigenvectors provides a reduced-dimensional representation of the image stack which is then used to reconstruct an approximation of the original image that captures the essential features of the original SAR data. Backscatter intensity of the SAR images processed for this study period for unsupervised change detection and land cover classification, delineated the different features and classes based on long term coherence values.

Unsupervised fault detection approach based on depth auto-encoder for photovoltaic power generation system

Fault detection for photovoltaic power generation system is a challenging problem in condition monitoring and troubleshooting, which aims to maintain the safe operation of equipment and improve the benefit of photovoltaic industry. Aiming at the problems of frequent failures of photovoltaic power generation system, large amount of operating data and difficult to obtain fault samples, we propose an unsupervised fault detection approach for photovoltaic power generation system via bidirectional long/short memory deep auto-encoder which combines the auto-encoder in deep learning with the Bi-directional Long Short-Term Memory (BiLSTM). Specifically, We first take the statistical feature enhanced as the input of an auto-encoder based on BiLSTM. Then, we build a simulation model of Grid-connected PV system. Finally, we use the operation results under normal conditions to train the fault detection model to obtain the reconstruction error and determine the fault detection threshold, so as to judge the anomalies of the photovoltaic power generation system. We simulate the shadow occlusion fault and verify the effectiveness of the proposed method, and the fault detection accuracy of 0.95 is achieved. Compare with other models, the results show that it could set up better dependence on multi-dimensional data in time sequences, effectively testing solar panel failures and solving insufficient data labels problems.

Multi-Input data ASsembly for joint Analysis (MIASA): A framework for the joint analysis of disjoint sets of variables.

The joint analysis of two datasets [Formula: see text] and [Formula: see text] that describe the same phenomena (e.g. the cellular state), but measure disjoint sets of variables (e.g. mRNA vs. protein levels) is currently challenging. Traditional methods typically analyze single interaction patterns such as variance or covariance. However, problem-tailored external knowledge may contain multiple different information about the interaction between the measured variables. We introduce MIASA, a holistic framework for the joint analysis of multiple different variables. It consists of assembling multiple different information such as similarity vs. association, expressed in terms of interaction-scores or distances, for subsequent clustering/classification. In addition, our framework includes a novel qualitative Euclidean embedding method (qEE-Transition) which enables using Euclidean-distance/vector-based clustering/classification methods on datasets that have a non-Euclidean-based interaction structure. As an alternative to conventional optimization-based multidimensional scaling methods which are prone to uncertainties, our qEE-Transition generates a new vector representation for each element of the dataset union [Formula: see text] in a common Euclidean space while strictly preserving the original ordering of the assembled interaction-distances. To demonstrate our work, we applied the framework to three types of simulated datasets: samples from families of distributions, samples from correlated random variables, and time-courses of statistical moments for three different types of stochastic two-gene interaction models. We then compared different clustering methods with vs. without the qEE-Transition. For all examples, we found that the qEE-Transition followed by Ward clustering had superior performance compared to non-agglomerative clustering methods but had a varied performance against ultrametric-based agglomerative methods. We also tested the qEE-Transition followed by supervised and unsupervised machine learning methods and found promising results, however, more work is needed for optimal parametrization of these methods. As a future perspective, our framework points to the importance of more developments and validation of distance-distribution models aiming to capture multiple-complex interactions between different variables.

Integrating Unsupervised and Supervised ML Models for Analysis of Synthetic Data From VAE, GAN, and Clustering of Variables

Clustering of variables is a specialized approach for dimensionality reduction. This strategy is evaluated for data reduction with a Kaggle diabetes dataset. Since the original dataset is small, Generative Adversarial Networks (GAN) and Variational Autoencoders (VAE) are used to generate 100,000 records and tested for resemblance to the real data using standard statistical methods. VAE-data is more representative of the real data than GAN-data when analyzed using machine learning (ML) models. Applying Clustering of Variables on VAE-data yields new synthetic variables (SV). SV-data is then augmented with target variable data. Random Forest model is used on VAE and SV data. SV-data results matched VAE-data, proving the new data's quality. SV-data also provides insights into correlations and data dispersion patterns. This analysis implements a combination of Unsupervised learning (clustering of variables) and Supervised learning (classification) which is reflected in the results.

Shoreline Extraction Methods from Sentinel-2 and PlanetScope Images

Abstract. This work aims to compare and assess the performance of certain methodologies for shoreline mapping based on the use of medium (10 m) and high resolution (3 m) multi-spectral imagery, provided by Sentinel-2 (S2) and PlanetScope (PS), respectively. Being Sentinel-2 part of the Copernicus missions, its data are freely available. PS imagery are also freely available for scientific research, upon approval by the European Space Agency of a related project proposal. Several spectral indices, including Normalized Difference Water Index (NDWI), Modified Normalized Difference Water Index (MNDWI), Automated Water Extraction Index (AWEI), and Water Index (WI), were used for shoreline detection. In particular, two unsupervised classification techniques, the Gaussian Mixture Model (GMM) and K-means clustering were deployed as shoreline extraction methods. The outcomes of such approaches were validated using reference shorelines derived from aerial orthomosaics, generated from images acquired as close as possible to the satellite imagery dates, and the ”baseline and transect” approach for accuracy verification. Three tide-less Mediterranean beaches were used as study cases for comparison: the beach between Castelldefels and Gava in Spain, Feniglia and Marina di Grosseto in Italy. The results demonstrated sub-pixel accuracy in shoreline extraction, with Mean Absolute Distances ranging from 2 m to 5 m for S2 data and 1.5 m to 2 m for PS data. These findings highlight the potential of freely available satellite data for semi-automatic shoreline detection. Results obtained by using the combination of different indices and methodologies show that the best option may change depending on the considered context, hence future investigations should be dedicated to the development of a procedure for automatically determining the context-based (close to) optimal index-classifier combination.

Anomaly Detection in Blockchain Networks Using Unsupervised Learning: A Survey

In decentralized systems, the quest for heightened security and integrity within blockchain networks becomes an issue. This survey investigates anomaly detection techniques in blockchain ecosystems through the lens of unsupervised learning, delving into the intricacies and going through the complex tapestry of abnormal behaviors by examining avant-garde algorithms to discern deviations from normal patterns. By seamlessly blending technological acumen with a discerning gaze, this survey offers a perspective on the symbiotic relationship between unsupervised learning and anomaly detection by reviewing this problem with a categorization of algorithms that are applied to a variety of problems in this field. We propose that the use of unsupervised algorithms in blockchain anomaly detection should be viewed not only as an implementation procedure but also as an integration procedure, where the merits of these algorithms can effectively be combined in ways determined by the problem at hand. In that sense, the main contribution of this paper is a thorough study of the interplay between various unsupervised learning algorithms and how this can be used in facing malicious activities and behaviors within public and private blockchain networks. The result is the definition of three categories, the characteristics of which are recognized in terms of the way the respective integration takes place. When implementing unsupervised learning, the structure of the data plays a pivotal role. Therefore, this paper also provides an in-depth presentation of the data structures commonly used in unsupervised learning-based blockchain anomaly detection. The above analysis is encircled by a presentation of the typical anomalies that have occurred so far along with a description of the general machine learning frameworks developed to deal with them. Finally, the paper spotlights challenges and directions that can serve as a comprehensive compendium for future research efforts.

A Soft‐Tissue Driven Bone Remodeling Algorithm for Mandibular Residual Ridge Resorption Based on Patient CT Image Data

AbstractThe role of the biomechanical stimulation generated from soft tissue has not been well quantified or separated from the self‐regulated hard tissue remodeling governed by Wolff's Law. Prosthodontic overdentures, commonly used to restore masticatory functions, can cause localized ischemia and inflammation as they often compress patients’ oral mucosa and impede local circulation. This biomechanical stimulus in mucosa is found to accelerate the self‐regulated residual ridge resorption (RRR), posing ongoing clinical challenges. Based on the dedicated long‐term clinical datasets, we developed an in‐silico framework with a combination of techniques, including advanced image post‐processing, patient‐specific finite element models and unsupervised machine learning Self‐Organizing map algorithm, to identify the soft tissue induced residual ridge resorption and quantitatively elucidate the governing relationship between the RRR and hydrostatic pressure in mucosa. The proposed governing equation has not only enabled a predictive simulation for RRR as showcased in this study, providing a biomechanical basis for optimizing prosthodontic treatments, but also extended our understanding of the mechanobiological responses in the soft‐hard tissue interfaces and the role in bone remodeling.This article is protected by copyright. All rights reserved

Classification of e-waste using machine learning-assisted laser-induced breakdown spectroscopy.

Waste management and the economy are intertwined in various ways. Adopting sustainable waste management techniques can contribute to economic growth and resource conservation. Artificial intelligence (AI)-based classification is very crucial for rapid and contactless classification of metals in electronic waste (e-waste) management. In the present research work, five types of aluminium alloys, because of their extensive use in structural, electrical and thermotechnical functions in the electronics industry, were taken. Laser-induced breakdown spectroscopy (LIBS), a spectral identifier technique, was employed in conjunction with machine learning (ML) classification models of AI. Principal component analysis (PCA), an unsupervised ML classifier, was found incapable to differentiate LIBS data of alloys. Supervised ML classifier was then trained (for 10-fold cross-validation) on randomly selected 80% and tested on 20% spectral data of each alloy to assess classification capacity of each. In most of the tested variants of K nearest neighbour (kNN) the resulting accuracy was lower than 30% but kNN ensembled with random subspace method showed improved accuracy up to 98%. This study revealed that an AI-based LIBS system can classify e-waste alloys rather effectively in a non-contactless mode and could potentially be connected with robotic systems, hence, minimizing manual labour.

Machine Learning Library in C++

This project aims to develop a comprehensive and versatile machine learning library in C++ tailored to address the diverse needs of developers and researchers in the field. The library encompasses a robust set of core machine learning algorithms, encompassing supervised, unsupervised, and reinforcement learning techniques. Additionally, it incorporates essential data preprocessing tools to streamline data manipulation and feature engineering tasks, along with model evaluation capabilities crucial for assessing algorithm performance. The library's primary focus is on providing a rich suite of machine learning algorithms, This empowers users to effectively prepare data for training machine learning models. Additionally, the library provides tools for data splitting, and model evaluation to ensure reliable and robust model performance assessment.

ARGNet: using deep neural networks for robust identification and classification of antibiotic resistance genes from sequences

BackgroundEmergence of antibiotic resistance in bacteria is an important threat to global health. Antibiotic resistance genes (ARGs) are some of the key components to define bacterial resistance and their spread in different environments. Identification of ARGs, particularly from high-throughput sequencing data of the specimens, is the state-of-the-art method for comprehensively monitoring their spread and evolution. Current computational methods to identify ARGs mainly rely on alignment-based sequence similarities with known ARGs. Such approaches are limited by choice of reference databases and may potentially miss novel ARGs. The similarity thresholds are usually simple and could not accommodate variations across different gene families and regions. It is also difficult to scale up when sequence data are increasing.ResultsIn this study, we developed ARGNet, a deep neural network that incorporates an unsupervised learning autoencoder model to identify ARGs and a multiclass classification convolutional neural network to classify ARGs that do not depend on sequence alignment. This approach enables a more efficient discovery of both known and novel ARGs. ARGNet accepts both amino acid and nucleotide sequences of variable lengths, from partial (30–50 aa; 100–150 nt) sequences to full-length protein or genes, allowing its application in both target sequencing and metagenomic sequencing. Our performance evaluation showed that ARGNet outperformed other deep learning models including DeepARG and HMD-ARG in most of the application scenarios especially quasi-negative test and the analysis of prediction consistency with phylogenetic tree. ARGNet has a reduced inference runtime by up to 57% relative to DeepARG.ConclusionsARGNet is flexible, efficient, and accurate at predicting a broad range of ARGs from the sequencing data. ARGNet is freely available at https://github.com/id-bioinfo/ARGNet, with an online service provided at https://ARGNet.hku.hk.7nR91jX7ySRMRPZrE5tsTyVideo

Dry grasslands and thorn-cushion communities of Armenia: a first syntaxonomic classification

Aim: To provide the first syntaxonomic, plot-based classification of the dry grasslands and thorn-cushion communities in Armenia. Study area: Armenia. Methods: We sampled 111 vegetation plots (10 m2) and recorded environmental and structural parameters. We collected additional 487 relevés from surrounding countries for a broad-scale comparison. We used modified TWINSPAN to derive a syntaxonomic classification system, whose units were then compared among each other regarding species composition, structure, site conditions and distribution. Results: The classification of Armenian vegetation plots resulted in a 12-cluster solution. Unsupervised classification of the broad-scale dataset yielded five main groups, which were used for the high-level syntaxonomic assignments of the Armenian data. We assigned about half of the plots of the Armenian dataset to the Festuco-Brometea, while the remaining represented a potential new class, preliminarily called “Ziziphora tenuior-Stipa arabica grasslands”. Most of the syntaxa below class level are new to science, therefore we provide formal descriptions of three orders (Plantagini atratae-Bromopsietalia variegatae, Onobrychido transcaucasicae-Stipetalia pulcherrimae, Cousinio brachypterae-Stipetalia arabicae), four alliances (Acantholimono caryophyllacei-Stipion holosericeae, Artemision fragrantis, Onobrychido michauxii-Stipion capillatae, Onobrychido transcaucasicae-Stipion pulcherrimae) and six associations. We found significant differences in the topographic, climatic and soil characteristics, and structural parameters, species life forms and distribution range types between the grassland types at different syntaxonomic levels. The mean species richness was 47.3 (vascular plants: 46.8, bryophytes: 0.4, lichens: 0.1). Conclusions: We found remarkable differences of the Armenian dry grasslands from the previously known units and described most of the higher syntaxa and all the associations as new to science. Our study provides arguments for a potential new class of Ziziphora tenuior-Stipa arabica grasslands separate both from the Euro-Siberian Festuco-Brometea and the Anatolian Astragalo-Brometea. Finally, we found plot scale richness of vascular plants clearly above the Palaearctic average of dry grasslands and that of non-vascular plants clearly below, which calls for further biodiversity analyses. Taxonomic reference: Euro+Med (2023) for vascular plants, Hodgetts et al. (2020) for bryophytes, Nimis et al. (2018) for lichens except for Xanthoparmelia camtschadalis (Ach.) Hale. Abbreviations: EDGG = Eurasian Dry Grassland Group; DCA = detrended correspondence analysis; ICPN = International Code of Phytosociological Nomenclature (Theurillat et al. 2021); TWINSPAN = two-way indicator species analysis.

Genomic fingerprints of the world's soil ecosystems.

Despite the explosion of soil metagenomic data, we lack a synthesized understanding of patterns in the distribution and functions of soil microorganisms. These patterns are critical to predictions of soil microbiome responses to climate change and resulting feedbacks that regulate greenhouse gas release from soils. To address this gap, we assay 1,512 manually curated soil metagenomes using complementary annotation databases, read-based taxonomy, and machine learning to extract multidimensional genomic fingerprints of global soil microbiomes. Our objective is to uncover novel biogeographical patterns of soil microbiomes across environmental factors and ecological biomes with high molecular resolution. We reveal shifts in the potential for (i) microbial nutrient acquisition across pH gradients; (ii) stress-, transport-, and redox-based processes across changes in soil bulk density; and (iii) greenhouse gas emissions across biomes. We also use an unsupervised approach to reveal a collection of soils with distinct genomic signatures, characterized by coordinated changes in soil organic carbon, nitrogen, and cation exchange capacity and in bulk density and clay content that may ultimately reflect soil environments with high microbial activity. Genomic fingerprints for these soils highlight the importance of resource scavenging, plant-microbe interactions, fungi, and heterotrophic metabolisms. Across all analyses, we observed phylogenetic coherence in soil microbiomes-more closely related microorganisms tended to move congruently in response to soil factors. Collectively, the genomic fingerprints uncovered here present a basis for global patterns in the microbial mechanisms underlying soil biogeochemistry and help beget tractable microbial reaction networks for incorporation into process-based models of soil carbon and nutrient cycling.IMPORTANCEWe address a critical gap in our understanding of soil microorganisms and their functions, which have a profound impact on our environment. We analyzed 1,512 global soils with advanced analytics to create detailed genetic profiles (fingerprints) of soil microbiomes. Our work reveals novel patterns in how microorganisms are distributed across different soil environments. For instance, we discovered shifts in microbial potential to acquire nutrients in relation to soil acidity, as well as changes in stress responses and potential greenhouse gas emissions linked to soil structure. We also identified soils with putative high activity that had unique genomic characteristics surrounding resource acquisition, plant-microbe interactions, and fungal activity. Finally, we observed that closely related microorganisms tend to respond in similar ways to changes in their surroundings. Our work is a significant step toward comprehending the intricate world of soil microorganisms and its role in the global climate.

Reward actively engages both implicit and explicit components in dual force field adaptation.

Motor learning occurs through multiple mechanisms, including unsupervised, supervised (error-based) and reinforcement (reward-based) learning. Although studies have shown that reward leads to an overall better motor adaptation, the specific processes by which reward influences adaptation are still unclear. Here, we examine how the presence of reward affects dual-adaptation to novel dynamics, and distinguish its influence on implicit and explicit learning. Participants adapted to two opposing force fields in an adaptation/de-adaptation/error-clamp paradigm, where five levels of reward (a score and a digital face) were provided as participants reduced their lateral error. Both reward and control (no reward provided) groups simultaneously adapted to both opposing force fields, exhibiting a similar final level of adaptation, which was primarily implicit. Triple-rate models fit to the adaptation process found higher learning rates in the fast and slow processes, and a slightly increased fast retention rate for the reward group. While differences in the slow learning rate were only driven by implicit learning, the large difference in the fast learning rate was mainly explicit. Overall, we confirm previous work showing that reward increases learning rates, extending this to dual-adaptation experiments, and demonstrating that reward influences both implicit and explicit adaptation. Specifically, we show that reward acts primarily explicitly on the fast learning rate and implicitly on the slow learning rates.

A Typology of Social Media Use by Human Service Nonprofits: Mixed Methods Study.

Nonprofit organizations are increasingly using social media to improve their communication strategies with the broader population. However, within the domain of human service nonprofits, there is hesitancy to fully use social media tools, and there is limited scope among organizational personnel in applying their potential beyond self-promotion and service advertisement. There is a pressing need for greater conceptual clarity to support education and training on the varied reasons for using social media to increase organizational outcomes. This study leverages the potential of Twitter (subsequently rebranded as X [X Corp]) to examine the online communication content within a sample (n=133) of nonprofit sexual assault (SA) centers in Canada. To achieve this, we developed a typology using a qualitative and supervised machine learning model for the automatic classification of tweets posted by these centers. Using a mixed methods approach that combines machine learning and qualitative analysis, we manually coded 10,809 tweets from 133 SA centers in Canada, spanning the period from March 2009 to March 2023. These manually labeled tweets were used as the training data set for the supervised machine learning process, which allowed us to classify 286,551 organizational tweets. The classification model based on supervised machine learning yielded satisfactory results, prompting the use of unsupervised machine learning to classify the topics within each thematic category and identify latent topics. The qualitative thematic analysis, in combination with topic modeling, provided a contextual understanding of each theme. Sentiment analysis was conducted to reveal the emotions conveyed in the tweets. We conducted validation of the model with 2 independent data sets. Manual annotation of 10,809 tweets identified seven thematic categories: (1) community engagement, (2) organization administration, (3) public awareness, (4) political advocacy, (5) support for others, (6) partnerships, and (7) appreciation. Organization administration was the most frequent segment, and political advocacy and partnerships were the smallest segments. The supervised machine learning model achieved an accuracy of 63.4% in classifying tweets. The sentiment analysis revealed a prevalence of neutral sentiment across all categories. The emotion analysis indicated that fear was predominant, whereas joy was associated with the partnership and appreciation tweets. Topic modeling identified distinct themes within each category, providing valuable insights into the prevalent discussions surrounding SA and related issues. This research contributes an original theoretical model that sheds light on how human service nonprofits use social media to achieve their online organizational communication objectives across 7 thematic categories. The study advances our comprehension of social media use by nonprofits, presenting a comprehensive typology that captures the diverse communication objectives and contents of these organizations, which provide content to expand training and education for nonprofit leaders to connect and engage with the public, policy experts, other organizations, and potential service users.