Uncaging Reaction Research Articles

Design and Synthesis of Two-Photon Responsive Chromophores for Near-Infrared Light-Induced Uncaging Reactions

Near-infrared two-photon (TP)-induced photorelease (uncaging) of bioactive molecules such as drugs has attracted considerable attention because of its ability to elucidate mechanistic aspects of biological processes. This short review summarizes recent developments in the design and synthesis of TP-responsive chromophores.1 Introduction2 Molecular Design of TP-Responsive Organic Chromophores for ‘Caging & Uncaging’2.1 π-Conjugation2.2 A Dipolar System2.3 A Quadrupolar System2.4 An Octupolar System3 Recent Developments of TP Uncaging Reactions3.1 4-Methoxy-7-nitroindolinyl Caged Auxins3.2 Uncaging of GABA and Tryptophan Using TP-Induced Electron-Transfer Reactions3.3 Effect of Position Isomery in Aminoquinoline-Derived Photolabile Protecting Groups (PPGs)3.4 Cooperative Dyads for TP Uncaging3.5 Caged Calcium with a Bis-styrylthiophene Backbone3.6 Cloaked Caged Compounds3.7 Three-Dimensional Control of DNA Hybridization by Orthogonal Two-Color TP Uncaging3.8 TP-Induced Release of Diethyl Phosphate (DEP) and ATP4 Our Contribution to TP Uncaging Reactions5 Summary

In Vivo Activation of Duocarmycin-Antibody Conjugates by Near-Infrared Light.

Near-IR photocaging groups based on the heptamethine cyanine scaffold present the opportunity to visualize and then treat diseased tissue with potent bioactive molecules. Here we describe fundamental chemical studies that enable biological validation of this approach. Guided by rational design, including computational analysis, we characterize the impact of structural alterations on the cyanine uncaging reaction. A modest change to the ethylenediamine linker (N,N′-dimethyl to N,N′-diethyl) leads to a bathochromic shift in the absorbance maxima, while decreasing background hydrolysis. Building on these structure–function relationship studies, we prepare antibody conjugates that uncage a derivative of duocarmycin, a potent cytotoxic natural product. The optimal conjugate, CyEt-Pan-Duo, undergoes small molecule release with 780 nm light, exhibits activity in the picomolar range, and demonstrates excellent light-to-dark selectivity. Mouse xenograft studies illustrate that the construct can be imaged in vivo prior to uncaging with an external laser source. Significant reduction in tumor burden is observed following a single dose of conjugate and near-IR light. These studies define key chemical principles that enable the identification of cyanine-based photocages with enhanced properties for in vivo drug delivery.

Light-induced antibiotic release from a coumarin-caged compound on the ultrafast timescale.

A synthesis route for puromycin caged with the photo-responsive 7-diethylaminocoumarinyl protecting group carbamate was developed. The inactivation and recovery of the cytotoxic effect of puromycin was tested with a XTT cell viability assay. The uncaging mechanism was studied by ultrafast transient absorption spectroscopy and by time-correlated single photon counting. The combination of these results with quantum-chemical calculations provided detailed insights in dynamics upon excitation. Interestingly, a change of the dipole moment due to structural rearrangements of the amino moiety led to an intermolecular charge transfer on the picosecond time-scale. IR measurements marked the successful uncaging via the release of CO2, resulting from the carbamate linker. This decarboxylation constituted the rate-limiting step of the uncaging reaction and occurred on the subsecond timescale. DEACM-puromycin, thus, represents an efficient photo-activatable antibiotic for in-cell applications.

Near-infrared uncaging or photosensitizing dictated by oxygen tension.

Existing strategies that use tissue-penetrant near-infrared light for the targeted treatment of cancer typically rely on the local generation of reactive oxygen species. This approach can be impeded by hypoxia, which frequently occurs in tumour microenvironments. Here we demonstrate that axially unsymmetrical silicon phthalocyanines uncage small molecules preferentially in a low-oxygen environment, while efficiently generating reactive oxygen species in normoxic conditions. Mechanistic studies of the uncaging reaction implicate a photoredox pathway involving photoinduced electron transfer to generate a key radical anion intermediate. Cellular studies demonstrate that the biological mechanism of action is O2-dependent, with reactive oxygen species-mediated phototoxicity in normoxic conditions and small molecule uncaging in hypoxia. These studies provide a near-infrared light-targeted treatment strategy with the potential to address the complex tumour landscape through two distinct mechanisms that vary in response to the local O2 environment.

A Bioorthogonal Near-Infrared Fluorogenic Probe for mRNA Detection.

There is significant interest in developing methods that visualize and detect RNA. Bioorthogonal template-driven tetrazine ligations could be a powerful route to visualizing nucleic acids in native cells, yet past work has been limited with respect to the diversity of fluorogens that can be activated via a tetrazine reaction. Herein we report a novel bioorthogonal tetrazine uncaging reaction that harnesses tetrazine reactivity to unmask vinyl ether caged fluorophores spanning the visible spectrum, including a near-infrared (NIR)-emitting cyanine dye. Vinyl ether caged fluorophores and tetrazine partners are conjugated to high-affinity antisense nucleic acid probes, which show highly selective fluorogenic reactivity when annealed to their respective target RNA sequences. A target sequence in the 3' untranslated region of an expressed mRNA was detected in live cells employing appropriate nucleic acid probes bearing a tetrazine-reactive NIR fluorogen. Given the expansion of tetrazine fluorogenic chemistry to NIR dyes, we believe highly selective proximity-induced fluorogenic tetrazine reactions could find broad uses in illuminating endogenous biomolecules in cells and tissues.

Design and Synthesis of a 4-Nitrobromobenzene Derivative Bearing an Ethylene Glycol Tetraacetic Acid Unit for a New Generation of Caged Calcium Compounds with Two-Photon Absorption Properties in the Near-IR Region and Their Application in Vivo.

Among biologically active compounds, calcium ions (Ca2+) are one of the most important species in cell physiological functions. Development of new calcium chelators with two-photon absorption (TPA) properties is a state-of-the-art challenge for chemists. In this study, we report the first and efficient synthesis of 5-bromo-2-nitrobenzyl-substituted ethylene glycol tetraacetic acid (EGTA) as a platform for a new generation of calcium chelators with TPA properties in the near-infrared region. New calcium chelators with high TPA properties, that is, a two-photon (TP) fragmentation efficiency of δu = 20.7 GM at 740 nm for 2-(4-nitrophenyl)benzofuran (NPBF)-substituted EGTA (NPBF-EGTA, Kd = 272 nM) and δu = 7.8 GM at 800 nm for 4-amino-4′-nitro-1,1′-biphenyl (BP)-substituted EGTA (BP-EGTA, Kd = 440 nM) derivatives, were synthesized using Suzuki–Miyaura coupling reactions of the bromide with benzofuran-2-boronic acid and 4-(dimethylamino)phenyl boronic acid, respectively. The corresponding acetoxymethyl (AM) esters were prepared and successfully applied to the Ca2+-uncaging reaction triggered by TP photolysis in vivo.

Two-Photon Activation of p-Hydroxyphenacyl Phototriggers: Toward Spatially Controlled Release of Diethyl Phosphate and ATP.

Two-photon activation of the p-hydroxyphenacyl (pHP) photoactivated protecting group is demonstrated for the first time using visible light at 550 nm from a pulsed laser. Broadband two-photon absorption measurements reveal a strong two-photon transition (>10 GM) near 4.5 eV that closely resembles the lowest-energy band at the same total excitation energy in the one-photon absorption spectrum of the pHP chromophore. The polarization dependence of the two-photon absorption band is consistent with excitation to the same S3 ((1)ππ*) excited state for both one- and two-photon activation. Monitoring the progress of the uncaging reaction under nonresonant excitation at 550 nm confirms a quadratic intensity dependence and that two-photon activation of the uncaging reaction is possible using visible light in the range 500-620 nm. Deprotonation of the pHP chromophore under mildly basic conditions shifts the absorption band to lower energy (3.8 eV) in both the one- and two-photon absorption spectra, suggesting that two-photon activation of the pHP chromophore may be possible using light in the range 550-720 nm. The results of these measurements open the possibility of spatially and temporally selective release of biologically active compounds from the pHP protecting group using visible light from a pulsed laser.

Design and synthesis of a new chromophore, 2-(4-nitrophenyl)benzofuran, for two-photon uncaging using near-IR light.

A new chromophore, 2-(4-nitrophenyl)benzofuran (NPBF), was designed for two-photon (TP) uncaging using near-IR light. The TP absorption (TPA) cross-sections of the newly designed NPBF chromophore were determined to be 18 GM at 720 nm and 54 GM at 740 nm in DMSO. The TP uncaging reaction of a caged benzoate with the NPBF chromophore quantitatively produced benzoic acid with an efficiency (δu) of ∼5.0 GM at 740 nm. The TP fragmentation of an EGTA unit was observed with δu = 16 GM. This behavior makes the new chromophore a promising TP photoremovable protecting group for physiological studies.

Exclusive photorelease of signalling lipids at the plasma membrane

Photoactivation of caged biomolecules has become a powerful approach to study cellular signalling events. Here we report a method for anchoring and uncaging biomolecules exclusively at the outer leaflet of the plasma membrane by employing a photocleavable, sulfonated coumarin derivative. The novel caging group allows quantifying the reaction progress and efficiency of uncaging reactions in a live-cell microscopy setup, thereby greatly improving the control of uncaging experiments. We synthesized arachidonic acid derivatives bearing the new negatively charged or a neutral, membrane-permeant coumarin caging group to locally induce signalling either at the plasma membrane or on internal membranes in β-cells and brain slices derived from C57B1/6 mice. Uncaging at the plasma membrane triggers a strong enhancement of calcium oscillations in β-cells and a pronounced potentiation of synaptic transmission while uncaging inside cells blocks calcium oscillations in β-cells and causes a more transient effect on neuronal transmission, respectively. The precise subcellular site of arachidonic acid release is therefore crucial for signalling outcome in two independent systems.

Control of cellular function by reversible photoregulation of translation.

The use of light as an external stimulus offers the potential for spatiotemporal control and is thus ideal for controlling gene expression in living cells. In commonly used caging systems, once the caging compound is removed, protein expression cannot be stopped, due to the irreversibility of the uncaging reaction. We have developed a reversible method for regulating protein expression with the aid of a photoresponsive cap that can control the translation of mRNA in a reversible manner through triggering of cis-trans photoisomerization of the cap. In its trans form, the photoresponsive cap completely inhibited translation, whereas the cis form yielded protein (12.7 times more translated protein than in the trans form). Moreover, we succeeded in controlling the levels, timing and duration of protein expression in living mammalian cells. Additionally, neuronal differentiation of PC12 cells was photoinduced by controlling constitutively active H-Ras 61L protein expression.

A near-IR uncaging strategy based on cyanine photochemistry.

The development of photocaging groups activated by near-IR light would enable new approaches for basic research and allow for spatial and temporal control of drug delivery. Here we report a near-IR light-initiated uncaging reaction sequence based on readily synthesized C4′-dialkylamine-substituted heptamethine cyanines. Phenol-containing small molecules are uncaged through sequential release of the C4′-amine and intramolecular cyclization. The release sequence is initiated by a previously unexploited photochemical reaction of the cyanine fluorophore scaffold. The uncaging process is compatible with biological milieu and is initiated with low intensity 690 nm light. We show that cell viability can be inhibited through light-dependent release of the estrogen receptor antagonist, 4-hydroxycyclofen. In addition, through uncaging of the same compound, gene expression is controlled with near-IR light in a ligand-dependent CreERT/LoxP-reporter cell line derived from transgenic mice. These studies provide a chemical foundation that we expect will enable specific delivery of small molecules using cytocompatible, tissue penetrant near-IR light.

Caged Phosphate and the Slips and Misses in Determination of Quantum Yields for Ultraviolet‐A‐Induced Photouncaging

The quantum yields for photouncaging reactions are mostly determined relative to other uncaging reactions, often using 1-(2-nitrophenyl)ethyl-phosphate ("caged phosphate"). Herein, we demonstrate that the quantum yields acquired by using this method can be off by an order of magnitude at the typical irradiation wavelengths around 350 nm and describe an easy-to-use alternative procedure using inexpensive azobenzene.

Mechanism of the Photoinduced Uncaging Reaction of Puromycin Protected by a 6-Nitroveratryloxycarbonyl Group

The cleavage of a photolabile nitroveratryloxycarbonyl protecting group, which is widely used as caging group, was studied by femtosecond transient absorption spectroscopy in the visible and infrared spectral range and by flash-photolysis experiments on the longer time scale. On the basis of quantum-chemical calculations it is shown that directly after excitation, triplet absorption that is not part of the reactive pathway dominates the transient spectrum and that the molecules following the triplet pathway are trapped in a nonreactive triplet state. By contrast, photolysis proceeds from the singlet manifold. Therefore, trapping in the triplet state lowers the quantum yield of the process for this compound compared with other o-nitrobenzyl protecting groups. With our integrated approach of time-resolved UV and IR measurements and calculations, we can characterize the entire uncaging mechanism and identify the most relevant intermediate states along the reaction pathway. The final uncaging is accomplished within 32 μs.

Time-Resolved and Mechanistic Study of the Photochemical Uncaging Reaction of the o-Hydroxycinnamic Caged Compound

The o-hydroxycinnamic derivatives represent efficient caged compounds that can realize quantification of delivery upon uncaging, but there has been lack of time-resolved and mechanistic studies. We used time-resolved infrared (TRIR) spectroscopy to investigate the photochemical uncaging dynamics of the prototype o-hydroxycinnamic compound, (E)-3-(2-hydroxyphenyl)-acrylic acid ethyl ester (HAAEE), leading to coumarin and ethanol upon uncaging. Taking advantage of the specific vibrational marker bands and the IR discerning capability, we have identified and distinguished two key intermediate species, the cis-isomers of HAAEE and the tetrahedral intermediate, in the transient infrared spectra, thus providing clear spectral evidence to support the intramolecular nucleophilic addition mechanism following the trans-cis photoisomerization. Moreover, the product yields of coumarin upon uncaging were observed to be greatly affected by the solvent polarity, suppressed in CH2Cl2 but enhanced in D2O/CH3CN with the increasing volume ratio of D2O. The highly solvent-dependent behavior indicates E1 elimination of the tetrahedral intermediate to give rise to the final uncaging product coumarin. The photorelease rate of coumarin was directly characterized from TRIR (3.6 × 10(6) s(-1)), revealing the promising application of such o-hydroxycinnamic compound in producing fast alcohol jumps. The TRIR results provide the first time-resolved detection and thus offer direct dynamical information about this photochemical uncaging reaction.

Two-photon absorption triggered drug delivery from a polymer for intraocular lenses in presence of an UV-absorber

Abstract Two-photon-absorption (TPA) triggered photochemistry is a versatile tool to photochemically release compounds in an uncaging reaction where the desired reaction should occur behind an UV absorbing barrier, e.g. as in intraocular lenses (IOLs). Nonlinear effects of the UV-absorbing barrier, in this case the cornea, are negligible as long as the laser light passes through it at an intensity low enough that nonlinear effects do not occur. Only in the focus of the beam, i.e. inside the IOL, the required intensities are reached and TPA triggered photo cleavage occurs. The situation becomes complicated as soon as UV-absorbers are admixed to the polymer material. We show that typical concentrations of an UV-absorber only slightly affect the TPA-triggered uncaging reaction rate. As a testbed we used a newly synthetized acrylic polymer derivatized with an o -nitrobenzyl linker group carrying 5-fluorouracil as the model drug to be released. No photochemical decomposition of the UV absorber was observed. The release rate of 5-fluorouracil in presence of the UV absorber was reduced by about 6% only. Further the polymer presented here, is the first to release unmodified 5-fluorouracil without any auxiliary groups attached. This is important for potential applications in humans.

Water-soluble o-hydroxycinnamate as an efficient photoremovable protecting group of alcohols with fluorescence reporting

Two new o-hydroxycinnamates have been prepared for photoremovable protecting groups, and their photochemistry has been investigated. The photolysis of two caged compounds can efficiently release the corresponding alcohol in aqueous solutions, and the uncaging reaction proceeds with large one-photon excitation cross sections (1919 and 1535 M(-1) cm(-1)). The uncaging process has been observed by NMR spectroscopy. The caged compounds exhibit good aqueous solubility and excellent resistance to hydrolysis in a buffer solution.

Photoactivatable Caged Cyclic RGD Peptide for Triggering Integrin Binding and Cell Adhesion to Surfaces

We report the synthesis and properties of a photoactivatable caged RGD peptide and its application for phototriggering integrin- and cell-binding to surfaces. We analysed in detail 1) the differences in the integrin-binding affinity of the caged and uncaged forms by quartz crystal microbalance (QCM) studies, 2) the efficiency and yield of the photolytic uncaging reaction, 3) the biocompatibility of the photolysis by-products and irradiation conditions, 4) the possibility of site, temporal and density control of integrin-binding and therefore human cell attachment, and 5) the possibility of in situ generation of cell patterns and cell gradients by controlling the UV exposure. These studies provide a clear picture of the potential and limitations of caged RGD for integrin-mediated cell adhesion and demonstrate the application of this approach to the control and study of cell interactions and responses.

1,9-Dialkoxyanthracene as a 1O2-Sensitive Linker

We developed a (1)O(2)-sensitive linker based on a 9,10-dialkoxyanthracene structure. Its cleavage in the presence of (1)O(2) is quick and high-yielding. A phosphoramidite containing this fragment was prepared and coupled to a variety of molecular fragments, including nucleosides, fluorescent dyes, and a cholesteryl derivative. On the basis of this building block we prepared a fluorogenic probe for monitoring (1)O(2) in live mammalian cells and visible-light-activated "caged" oligodeoxyribonucleotides. In particular, the fluorogenic (1)O(2) probe is a conjugate of 4,7,4',7'-tetrachlorofluorescein and N,N,N',N'-tetramethylrhodamine coupled to each other via the (1)O(2)-sensitive linker. Fluorescence of the dyes in this probe is quenched. In the presence of (1)O(2), the linker is cleaved with formation of 9,10-anthraquinone and two strongly fluorescent dyes: 4,7,4',7'-tetrachlorofluorescein and N,N,N',N'-tetramethylrhodamine derivatives. We observed that the fluorescence of the probe correlates with the amount of (1)O(2) present in solution. The red-light-activated "caged" oligodeoxyribonucleotides are stable duplexes, which consist of an unmodified strand and a blocker strand. The (1)O(2)-sensitive linker is introduced in the interior of the blocker strand. Upon exposure of the duplex to red light in the presence of In(3+)(pyropheophorbide-a) chloride, the linker is cleaved with formation of the unstable duplex structure. This product decomposes spontaneously, releasing the unmodified strand, which can bind to the complementary target nucleic acid. This uncaging reaction is high-yielding. In contrast, previously reported visible-light-activated reagents are uncaged inefficiently due to competing reactions of sulfoxide and disulfide formation.

2-(1′-Hydroxyethyl)-anthraquinone as a photolabile protecting group for carboxylic acids

Using anthraquinone 2-yl ethyl (Aqe) as a photolabile protecting group for carboxylic acids, five caged compounds, Aqe esters of p-methoxybenzoic acid ( 1a), o-methylbenzoic acid ( 1b), benzoic acid ( 1c), p-nitrobenzoic acid ( 1d) and N-acetyl- l-tryptophan ( 1e), have been prepared, and their photochemistry was investigated. Upon 350 nm light irradiation, three caged compounds 1a– c in methanol solutions can efficiently release the corresponding carboxylic acids, their quantum yields ranging from 0.12 to 0.08. The intramolecular triplet–triplet energy transfer and the intramolecular electron transfer between triplet anthraquinone and the caged acids may occur, leading to a low efficiency of caged compounds 1d and 1e, respectively. Furthermore, based on quenching experiments, HPLC and spectral analysis, the mechanism of the uncaging reaction was suggested.

Synthesis of oligo-RNAs with photocaged adenosine 2′-hydroxyls

This protocol describes a general method for the preparation of RNAs in which the reactivity or hydrogen-bonding properties of the molecule are modified in a photoreversible fashion by use of a caging strategy. A single caged adenosine, modified at the 2' position as a nitro-benzyl ether, can be incorporated into short RNAs by chemical synthesis or into long RNAs by a combination of chemical and enzymatic synthesis. The modified RNAs can be uncaged by photolysis under a variety of conditions including the use of a laser or xenon lamp, and the course of this uncaging reaction may be readily followed by HPLC or thin-layer chromatography.