Ubatuba Region Research Articles

Bioactivity of the Protein Hydrolysates Obtained from the Most Abundant Crustacean Bycatch.

The animals from bycatch of the shrimp fisheries can be a source of natural products and bioactive compounds. Thus, the present study aimed to evaluate the bioactivity of protein hydrolysates prepared from the two most abundant crabs from the bycatch of shrimp fisheries in Brazil (Callinectes ornatus and Hepatus pudibundus). Samples of C. ornatus and H. pudibundus were collected in the region of Ubatuba, State of São Paulo, Brazil. Muscles with small pieces of exoskeleton of both species were hydrolyzed using two enzymes, Alcalase 2.4 L® or Protamex®. The in vitro antioxidant capacity was analyzed used three methods: DPPH, sulfhydryl groups, and peroxyl radicals. Additionally, the cytotoxicity of the hydrolysates was investigated using pre-osteoblasts cells. The results showed that the degree of hydrolysis (DH) of H. pudibundus was superior to DH of C. ornatus using both enzymes and was higher when using the enzyme Alcalase 2.4 L® (32.0% ± 1.9). The analysis suggested that the hydrolysates have antioxidant activity. Besides that, no cytotoxic effect was observed on cell viability. Thus, protein hydrolysates of C. ornatus and H. pudibundus have bioactivity, which add value to these bycatch species and suggests their potential use as nutraceutical ingredient in the food industry.

Evaluation of caridean ecological distribution in the Ubatuba region, southeastern Brazilian coast using unsupervised machine learning technique

AbstractWe used the unsupervised machine learning technique to evaluate the environmental factors responsible for modulating the spatial and seasonal distribution of caridean shrimps from a southeastern region of the Brazilian coast. Samplings were collected from seven transects with an artisanal shrimp fishery boat with two double‐rig nets. Samplings occurred every month from October 2008 to September 2009. The most frequently captured species were Exhippolysmata oplophoroides, Leander paulensis, and Nematopalaemon schmitti. The highest abundance of shrimps occurred in autumn at the II, III, and V transects, which present a higher amount of coarse sediment and biodetritic fragments on the bottom. During autumn, the temperatures were the highest and salinity values were the lowest. Data evaluation indicated efficiency in the visualization of interactions of different shrimp species and environmental data. This kind of sediment may be allowing shrimps to burrow in shelters that prevent predation. The seasons with high temperatures and low salinities can offer better conditions for the establishment of the studied species, despite the fact that there is no hypothesis to prove it. Additionally, the higher abundance of such shrimps coincides with vegetal debris deposition, which could serve as food and provide protection for these shrimps. In this region, the vegetation matter deposited at the bottom of the bay comes from the Atlantic Forest. Overall, the preservation of the coastal forest strongly influences the abundance of this taxon, as it provides protection and food for these shrimps.

Weight/carapace length relationship and condition factor of the roughneck shrimp, Rimapenaeus constrictus (Stimpson, 1874), on the southeastern Brazilian coast.

Rimapenaeus constrictus is a penaeid shrimp widely distributed in the Western Atlantic, frequently captured as bycatch in trawling activities. Here we describe the weight vs. carapace length relationship and the condition factor of the species. Shrimps were sampled in the Ubatuba region, northern littoral of São Paulo State, monthly. We analyzed 4,952 individuals (1,371 males and 3,581 females). We measured the individuals' weight and carapace length, and the condition factor (CF) was calculated for both sexes. Females had a heavier body when compared to males, probably due to their greater maximum body size achieved. Both sexes presented a negative allometric growth in weight, probably due to their reproductive pattern and activities. We found similar mean CF values for males and females. From temporal analysis, the highest CF values for females were observed during the seasons with lower water temperatures. Such a situation may happen because females' CF tend to be influenced by a greater food availability in the environment, induced by the intrusion of the South Atlantic Central Water during the spring and early summer in the Ubatuba. The information presented here could be used as subside in protection actions and management of bycatch species.

Unveiling the dynamics of the spider crab Libinia ferreirae, through reproductive and population characteristics on the south-eastern coast of Brazil

AbstractWe investigated the population dynamics of the spider crab Libinia ferreirae, focusing on the frequency distribution of individuals in size classes, sex ratio and the action of environmental variables (temperature, salinity, texture and organic matter content in the sediment) on reproduction and recruitment. Monthly collections were made in the Ubatuba region from January 1998 to December 2000. A total of 222 individuals were collected, including 123 juveniles (males and females), 43 adult males, 25 non-ovigerous adult females and 31 ovigerous females. Unlike most adult brachyurans, there was no significant size difference between sexes, and sexual dimorphism seems to be a varying characteristic for this crab genus. The reproductive period and recruitment were continuous with peaks that could be related to water mass dynamics and higher food availability in the Ubatuba region. In addition, our results increase knowledge about part of the life cycle of L. ferreirae, which could be useful for comparative studies.

Reproductive biology of the swimming crab Achelous spinimanus (Decapoda, Portunoidea): a potential fishing resource

ABSTRACT This study describes the reproductive and recruitment patterns of the swimming crab Achelous spinimanus (Latreille, 1819) in the Ubatuba region of the northern coast of São Paulo, Brazil. Crabs were captured monthly from January 1998 to December 1999 in 18 sites located in three bays (Ubatumirim, Ubatuba, and Mar Virado), using a commercial fishing boat. In each sampling area, bottom temperature, salinity, and organic matter content were recorded. A total of 1,911 individuals were captured: 350 adult males, 475 non-ovigerous adult females, 584 adult ovigerous females, and 502 immature individuals. Reproductive females were more abundant in deeper areas; this migration might be a strategy to improve larval dispersion and survival. Ovigerous females were found year-round, indicating a continuous reproduction, and their abundance was positively correlated with temperature. During the 2-year survey, crabs with all gonadal development stages were found. We can infer that this region provides suitable resources for the development of A. spinimanus.

Reproduction and population structure of Achelous spinimanus (Crustacea: Portunoidea) in the northern coast of São Paulo, Brazil, and influence of environmental factors

We studied the reproduction and population structure of a population of Achelous spinimanus in the region of Ubatuba, Brazil. We collected them monthly, in 2000, in eight sites of different depths (5 to 40 m). The size at the onset of sexual maturity was estimated by the carapace width and the population structure was analyzed based on the size frequency distribution. In total, we collected 402 individuals: 28 juveniles, 105 males and 269 females. In 2000, A. spinimanus reproduced continuously and had a single peak in September–October. This timing contrasts with what has been observed in other populations and may be a local strategy to decrease the interspecific competition with other swimming crabs. The individuals of A. spinimanus from Ubatuba in 2000 were smaller (16.8–93.5 mm) than those from Fortaleza Bay (near Ubatuba) in 1988–1989 (19.0–97.3 mm). We suggest that intense trawling pressure may have contributed to a reduction in the size of individuals.

Natural diet of Ocypode quadrata (Fabricius, 1787) (Crustacea, Decapoda, Brachyura) from the Northern Coast of São Paulo, Brazil

Decapod crustaceans have a wide variety of feeding habits, alternating among herbivory, predation, saprophagy, and filtration. The occupation of various trophic positions in the food web is a key feature in the evolution of the group. Thus, we analyzed the natural diet of the crab Ocypode quadrata (Fabricius, 1787), commonly known as the ghost crab and typically found on sandy beaches. The crabs were collected in the region of Ubatuba, between July 2016 and May 2017. The individuals were dissected in a laboratory, and each stomach was weighed and visually assessed in relation to the degree of repletion. After identification and classification, the items found were grouped for the analysis. In analyzing the stomach contents of Ocypode quadrata, 12 items were found: sand, Insecta, Hymenoptera, Hemiptera, Coleoptera, Crustacea, and other unidentified Arthropoda. We also found poriferans, Actnopterygii bones, plant pieces, non-organic material (plastic), and other non-identified materials. In the statistical analyzes, we observed seasonal differences in the composition of the diet, mostly related to the frequency of items consumed between dry and rainy seasons; the rainy season provided a greater diversity of items. Due to the great trophic spectrum of this species and tendency to feed on a wide range of items, O. quadrata is considered a generalist species, adapting according to the availability of prey in the wild.

Environmental factors modulating the bathymetric distribution of the demographic groups of Achelous spinimanus (Crustacea)

The spatio-temporal distribution of Achelous spinimanus demographic groups (juveniles, and adult males and females) and its relation with environmental factors was analyzed in the region of Ubatuba, southeastern Brazil. We performed the samplings from January to December 2000, at eight sites of different depths. A total of 402 specimens of A. spinimanus was captured. The lowest abundance of all demographic groups occurred in summer, while in winter and spring the abundance of adults was very high. Spatially, juveniles were found at 5 to 35m of depth, while adults at 15 to 40m, but were more abundant at 25m. The low abundance of all demographic groups during summer is probably due to the arrival of the South Atlantic Central Water in the region, which decreased the water temperature and salinity. These changes caused the migration of A. spinimanus to more sheltered places of the bay, possibly due to more favorable environmental conditions. The high abundance of the demographic groups at 25m of depth was due to its more heterogeneous sediment, and to avoid competition with other species more abundant in shallower areas. Therefore, the factors that modulate the distribution of A. spinimanus may differ depending on the ontogenetic phase.

Influence of environmental factors on the bathymetric distribution of the flecked box crab Hepatus pudibundus (Herbst, 1785) (Crustacea: Aethroidea) in the Southeastern Brazilian coast

Abstract: This study evaluated the relationships between environmental factors and the spatio-temporal distribution of H. pudibundus, with the hypothesis of differential occupation in coastal areas of southeastern Brazil. The samplings took place monthly in January-December 2000 period, along nine transects from 2 to 40 m of depth, in Ubatuba region, northern coast of São Paulo. We collected 1808 individuals of H. pudibundus. The highest abundance was recorded in winter in the transects 10-25 m deep. Abundance was positively correlated with organic matter content and texture sediment (phi values). With the retreat of the South Atlantic Central Water (SACW) in autumn and winter, the sediment swirls, suspending the detritivore and filter-feeding macrofauna, increasing the food availability. Sites characterized by finer sediment offer higher food availability, besides facilitating H. pudibundus burying behavior. Due to its opportunistic predatory behavior, this species feeds on a variety of organisms, including mollusks, annelids and foraminifera, which are preys more abundant in the studied area and in sediments of finer grain size.

<b>Growth, longevity, and juvenile recruitment of the white shrimp <i>Litopenaeus schmitti </i>(Burkenroad, 1936) (Decapoda: Penaeoidea) in southeastern Brazil

Litopenaeus schmitti is one of the most commercially exploited penaeids on the southeastern and southern Atlantic coast of Brazil. Information about juvenile recruitment and growth patterns of individuals is important for management programs. The present study estimated the growth parameters, longevity, and recruitment of L. schmitti in the region of Ubatuba, Sao Paulo State. The growth parameters of individuals were estimated by the Bertalanffy growth model, and longevity was estimated with the inverted Bertalanffy equation. The growth parameters were, for females and males respectively: CL ∞ = 53.10 mm and 43.23 mm, k = 1.82 year -1 and 2.19 years -1 , t 0 = 1.10 and 0.69. Longevity was calculated to be 2.27 years for females and 2.10 years for males. Juvenile recruitment occurred seasonally from December to April during the first year of sampling and from November to May in the second year. Although the large peak in juveniles seen in March 2007 in the estuarine regions coincided with the closed season, the reopening of the fishery in June may promote the capture of large numbers of newly grown adults who have not yet reproduced.

Does the upwelling phenomenon influence the population dynamics and management of the seabob shrimp Xiphopenaeus kroyeri (Heller, 1862) (Crustacea, Penaeidae)?

The seabob shrimp Xiphopenaeus kroyeri ranks third in commercial importance among fisheries in southeastern Brazil. An important management question is whether the same offseason can be applied to different regions. The population dynamics of the seabob shrimp was compared in two regions of southeastern Brazil: Macae, state of Rio de Janeiro and Ubatuba, state of Sao Paulo. All demographic categories of shrimp in the Macae region were larger than those in the Ubatuba region. Lower temperatures and greater longevities in the Macae region may account for this difference in size from Ubatuba. In Macae, number of reproductive females and juveniles correlated with organic-matter content. In Ubatuba, only chlorophyll-a showed a correlation with reproductive females. The reproductive period and recruitment were correlated in both populations. The difference in environmental factors between these regions, resulting of the Cabo Frio upwelling, although they are located close together, directly influences the population dynamics of X. kroyeri. The Cabo Frio upwelling may be acting as a physical barrier, preventing gene flow and differentiating the seabob shrimp stocks in the two regions. These data suggest that different offseason periods for different regions could increase the sustainability of shrimp harvesting along the Brazilian coast.

Bioprospecting from cultivable bacterial communities of marine sediment and invertebrates from the underexplored Ubatuba region of Brazil

Shrimp fisheries along the Brazilian coast have significant environmental impact due to high by-catch rates (21kg per kilogram of shrimp). Typically discarded, by-catch contains many invertebrates that may host a great variety of bacterial genera, some of which may produce bioactive natural products with biotechnological applications. Therefore, to utilize by-catch that is usually discarded we explored the biotechnological potential of culturable bacteria of two abundant by-catch invertebrate species, the snail Olivancillaria urceus and the sea star Luidia senegalensis. Sediment from the collection area was also investigated. Utilizing multiple isolation approaches, 134 isolates were obtained from the invertebrates and sediment. Small-subunit rRNA (16S) gene sequencing revealed that the isolates belonged to Proteobacteria, Firmicutes and Actinobacteria phyla and were distributed among 28 genera. Several genera known for their capacity to produce bioactive natural products (Micromonospora, Streptomyces, Serinicoccus and Verrucosispora) were retrieved from the invertebrate samples. To query the bacterial isolates for their ability to produce bioactive metabolites, all strains were fermented and fermentation extracts profiled by UP LC-HRMS and tested for antimicrobial activity. Four strains exhibited antimicrobial activity against methicillin-resistant Staphylococcus aureus (MRSA) and Staphylococcus warneri.

Distribution pattern of juveniles of the pink shrimps Farfantepenaeus brasiliensis (Latreille, 1817) and F. paulensis (Pérez-Farfante, 1967) on the southeastern Brazilian coast

The spatio-temporal distribution of juveniles of the pink shrimps Farfantepenaeus brasiliensis (Latreille, 1817) and Farfantepenaeus paulensis (Perez-Farfante, 1967) in the Ubatuba region (SP) was investigated. Sampling was performed in the bays of Ubatumirim (UBM), Ubatuba (UBA) and Mar Virado (MV). A total of 2,018 F. brasiliensis and F. paulensis were collected. The largest catch of juveniles of both species occurred in UBA (N = 867), followed by UBM (N = 729) and MV (N= 422). The bottom sediment in MV had the highest silt and clay content, which explains the negative correlation of the substrate with the abundance of both species. Temperature was positively correlated with the abundance of both species. Juveniles were highly abundant in shallower areas in the summer of 1998. The high rainfall in this El Nino period may have lowered the salinity in estuarine waters and led the shrimps to move to coastal areas in search of higher salinities such as in bays. With this unusually early reduction in salinity, individuals migrated to the bay before the closed season began and thus became more exposed to fishing. We confirmed that monitoring environmental variations, especially in El Nino years, is essential for understanding the distribution patterns of juveniles of both species.

The reproductive performance of the Red-Algae shrimp Leander paulensis (Ortmann, 1897) (Decapoda, Palaemonidae) and the effect of post-spawning female weight gain on weight-dependent parameters

AbstractDecapod species have evolved with a variety of reproductive strategies. In this study reproductive features of the palaemonid shrimp Leander paulensiswere investigated. Individuals were collected in the coastal region of Ubatuba, São Paulo, Brazil. In all, 46 ovigerous females were examined in terms of the following reproductive traits: fecundity, reproductive output, brood loss and egg volume. Leander paulensis produces a large number of small eggs with an average fecundity of 635 ± 246 eggs. Egg volume increased significantly from early (0.034 ± 0.008 mm3) to late development stage (0.05 ± 0.012 mm3). The reproductive output did not correlate with female size. The weight of females bearing stage 2 eggs was significantly higher than that of females carrying stage 1 eggs. We assume that the reason for this weight gain is the recovery of female reserves that have been depleted for egg production. Moreover, we emphasize that this weight gain must be considered when evaluating weight-dependent variables such as reproductive output or brood loss in relation to female weight. Otherwise, an overestimation of these variables might lead to inaccurate results.

Abundance and distribution of the swimming crab Callinectes danae Smith, 1869 (Crustacea, Decapoda, Portunidae) in the Ubatuba region, southeastern Brazil

This study analysed the spatio-temporal distribution of Callinectes danae considering some environmental factors in three bays in Ubatuba, São Paulo, Brazil: Ubatumirim, Ubatuba and Mar Virado. Sampling was performed monthly (from January 1998 to December 1999) using a shrimp fishery boat provided with double rig nets. Six transects were established in each bay, three being in areas protected from wave action (at 5, 7.5 and 10 m depth) and three in exposed areas (at 10, 15 and 20 m). A total of 3039 specimens were obtained. The distribution of C. danae differed between years, among seasons, bays and transects (K–W; p < 0.05). This species occurred with a higher abundance in the shallow transects of all bays studied. These transects were characterized by substrate composed of fine or very fine sand and by silt and clay, higher values of bottom temperature and lower salinity values. Based on canonical correspondence analysis, the most relevant environmental factors for the spatio-temporal distribution of C. danae, in addition to salinity, were the bottom-water temperature and the sediment texture.

Diel Variation in Abundance and Size of the South American Red Shrimp Pleoticus Muelleri (Spence Bate, 1888) (Decapoda, Solenoceridae) in the Ubatuba Region, Southeastern Brazil

Diel variation in the abundance and size of Pleoticus muelleri in the Ubatuba region was investigated during 2000. During each season of the year, sampling was conducted during the day and at night at 8 depths, from 5 to 40 m. The estimated number of shrimp was 955 individuals, 272 collected during the day and 683 at night. There was a difference in the abundance of P. muelleri between day and night (χ², p=2.33E-40). The abundance during the day and at night differed by season with the exception of the spring (χ², p=0.06). The abundance during both periods also differed by depth, except at 15 and 30 m, where it was not significant (χ², p=0.84 and 0.06, respectively). The shrimp caught at night were generally smaller than those caught during the day (Kolmogorov-Smirnov, p&lt;0.01). Pleoticus muelleri juveniles were found primarily at night. This tendency could have influenced the lower mean size for this period. The sediment type and the bottom temperature appear to influence the behavior of this species and consequently the catch rate during the periods analyzed.

Temporal and spatial distribution of the commercial shrimp Litopenaeus schmitti (Dendrobranchiata: Penaeidae) in the south-eastern Brazilian coast

The goal of the present study was to assess the temporal and spatial distribution of L. schmitti in three bays of the northern coast of the State of São Paulo, Ubatumirim (UBM), Ubatuba (UBA) and Mar Virado (MV), over a period of two years (1998 and 1999). Abiotic factors were monitored to test their influence on the distribution of the species through redundancy analysis. The shrimp were captured using a commercial fishing boat equipped with double-rig trawling nets at six sampling points. A total of 5658 individuals were collected during the study (4437 and 1221 in the first and second years, respectively). The number of individuals differed between years, bays, seasons and sampling locations. The highest number of L. schmitti was collected in MV (N = 2747), followed by UBM (N = 1649) and UBA (N = 1262). Shrimp abundance correlated positively with organic matter content, salinity and temperature, with the highest number of individuals collected from sites with intermediate levels of organic content (4 and 6%) and increasing when the sediment had a higher proportion of fine and very fine sand + clay. Abundance was also associated negatively with rainfall, given that the analysed population showed a seasonal pattern, with an increase in capture rate in those months following the rainy season. Average rainfall was 222.47 ± 138.68 mm, with a maximum of 538 mm and a minimum of 22.4 mm. The results obtained in this study suggest that, in the region of Ubatuba, temperature, salinity, organic content and rainfall modulate the distribution of these animals.

Effect of environmental factors on the abundance of decapod crustaceans from soft bottoms off southeastern Brazil

This study investigated the importance of variations in environmental factors affecting the abundance patterns of decapods on the southeastern Brazilian coast. Sampling was carried out monthly from January 1998 through December 1999 in Ubatumirim and Mar Virado, Ubatuba region, using a commercial shrimp fishing boat equipped with double-rig nets. Six areas adjacent to rocky shores were chosen. Bottom-water samples were collected using a Nansen bottle, to measure the temperature and salinity. Sediment samples were also obtained by means of a Van Veen grab, for determination of texture and organic-matter content. The association of environmental factors with species abundance was evaluated by Canonical Correspondence Analysis (α = 0.05). Forty-one species of Decapoda were used in the multivariate analysis. The analysis indicated that sediment texture (phi) and bottom temperature were the main factors correlated (p < 0.05) with the spatial and temporal abundance of the species. Considering the study region as faunal transition zone, including a mixture of species of both tropical and subantarctic origin, the species responded differently to environmental factors, mainly temperature. It is conceivable that the decapods adjust their distribution according to their intrinsic physiological limitations, possibly as a result of the available resources.

Low-frequency physical variations in the coastal zone of Ubatuba, northern coast of São Paulo State, Brazil

Sea level (SL), wind, air temperature (AT) and sea surface temperature (SST) variations in the coastal region of Ubatuba, northern coast of São Paulo, are assessed. A Lanczos-square cosine filter, with a 40-hour window, was applied over the SL time series between 1978 and 2000, except for the period comprising 1984 to 1986. In order to study subtidal effects on mean sea level (MSL), SL numerical filtering indicated that there was a virtually complete removal of semidiurnal and diurnal astronomical tidal components over the period of study. Results indicated an average raw SL rise of 2.3 mm/year, whereas average filtered MSL was of the order of 0.7 mm/year. Despite the overall positive MSL trend, the lunar nodal cycle of 18.6 years seemed to be the explanation for the SL series pattern. Correlations between MSL and parallel wind had a maximum correlation coefficient around 0.6, with 99% statistical confidence, while MSL and perpendicular wind correlations were not statistically significant. These results may be explained by Ekman dynamics. Data records of AT and SST between 1990 and 2003 showed positive trends for both variables. During this period, AT rose about 0.087 ºC /year for the raw series and 0.085 ºC /year for the monthly time series, and SST showed a rise of 0.047 ºC /year and 0.046 ºC/year, for the raw and monthly time series, respectively. The monthly climatology for both AT and SST showed higher values in February with 27.79 ºC and 28.59 ºC for AT and SST, respectively, and the lowest in July with 21.12 ºC for AT and 21.91 ºC for SST.

Vertical distribution patterns of macrofauna in a subtropical near‐shore coastal area affected by urban sewage

AbstractThe vertical distribution of macrobenthic fauna, heavy metals, and other physico‐chemical and biological characteristics of the sediments were studied in three sediment layers (0–7, 8–14, 15–21 cm) at seven stations in the Ubatuba region, north coast of São Paulo State, Brazil at several temporal and spatial scales. Six stations were located in the inner bay near the riverine run‐off, and one was outside the bay, distant from the riverine influence. The samples were collected four times in 1 year, on a seasonal basis. Sediments were basis comprised predominantly of very fine sand and the vertical distribution of grain size was uniform to a depth of 21 cm in all stations. Higher values of total organic matter, organic carbon, sulphur, heavy metals and phaeopigments were recorded at the inner Ubatuba Bay stations, probably due to the riverine influence. C/N ratios indicated a mixed origin of organic matter with a major contribution of terrestrial material in the inner stations. The vertical distribution of heavy metals showed a slight decline with sediment depth in the inner stations, indicating the present contribution. Most of the macrofauna was found at the surface sediment layer. Biological data showed that in the inner stations of Ubatuba Bay, which are under the influence of urban sewage and are moderately polluted, the fauna was distributed more superficially within the substrate than in St. 7, which is located in the external portion of the bay distant from sewage inputs. The environmental quality of the sites studied varied little throughout the year, at least in relation to the variables considered here. Temporal variation in the vertical distribution of benthic fauna was not evident in the four sampling surveys analysed. Only minor changes in the vertical distribution of the total fauna were detected in the seasonal scale, with the organisms located less deep within the sediment column in summer, indicating some influence of the tourism impact and/or rainy season.