Temporary Negative Ion Research Articles

Fragmentation of chlorpyrifos by thermal electron attachment: a likely relation to its metabolism and toxicity.

The energies of formation and dissociative decays of temporary negative ions of the organophosphorus insecticide chlorpyrifos (CPF) are studied using electron transmission spectroscopy (ETS), dissociative electron attachment spectroscopy (DEAS) and quantum-chemical calculations. Three features are displayed by ETS at 2.4, 3.1 and 4.30 eV, which are ascribed to empty σ* MOs, a higher-lying π* MO and a core-excited state, respectively. Two stable π* anion states are predicted by the calculations. Most of the negative fragments are detected by DEAS at thermal energies of the incident electrons, being thus associated with the dissociation of stable (vibrationally excited) negative ion states formed by electron attachment into the π* LUMO and LUMO+1. The CPF- molecular anions (not observed in the present study) are expected to decay by fast dissociation to give the most abundant ([CPF - HCl]-) species, which in turn dissociates on the microsecond timescale, producing as much as six metastable peaks in the mass spectrum. The m/z = 196 and 169 negative fragments, structurally similar to the main metabolites of CPF, 3,5,6-trichloro-2-pyridinol and O,O-diethyl thiophosphate, respectively, are formed by the direct decomposition of CPF-. Active radicals able to abstract hydrogen atoms from lipid membranes are generated as neutral counterparts of the observed anion fragments. A likely involvement of DEA in the biotransformation of CPF by cytochrome P450 enzymes in a reductive environment producing toxic species and precursors of the main metabolites is briefly discussed.

Dissociative electron attachment to 2,4,6-trichloroanisole and 2,4,6-tribromoanisole molecules.

2,4,6-trichloroanisole and 2,4,6-tribromoanisole were investigated by means of electron transmission spectroscopy and two different types of dissociative electron attachment spectrometers. The results obtained were interpreted with the support of density functional theory calculations. The dominant dissociative decay channels of the temporary molecular negative ions lead to the formation of Cl- and Br- in the low electron energy region. Formation of long-lived parent anions is observed at thermal electron energies. Their relative intensity depends on the experimental time window, ∼36 μs in the case of the static magnet mass analyzer and ∼200 μs for the quadrupole mass analyzer employed. The results obtained may be useful for rapid detection of these compounds in wine and pharmaceutical industries, as well as other branches connected to the food industry, e.g., packaging.

Low-Energy Electron Attachment to Serine Conformers: Shape Resonances and Dissociation Dynamics

Shape resonances of electron-molecule system formed in the low-energy electron attachment to four low-lying conformers of serine (serine 1, serine 2, serine 3, and serine 4) in gas phase are investigated using the quantum scattering method with the non-empirical model potentials in single-center expansion. In the attachment energy range of 0–10 eV, three shape resonances for serine 1, serine 2, and serine 4 and four shape resonances for serine 3 are predicted. The one-dimensional potential energy curves of the temporary negative ions of electron-serine are calculated to explore the correlations between the shape resonance and the bond cleavage. The bond-cleavage selectivity of the different resonant states for a certain conformer is demonstrated, and the recent experimental results about the dissociative electron attachment to serine are interpreted on the basis of present calculations.

Low-Energy Electron Interaction with Melatonin and Related Compounds.

The electron attaching properties and fragmentation of temporary negative ions of melatonin and its biosynthetic precursor tryptophan are studied in vacuo using dissociative electron attachment (DEA) spectroscopy. The experimental findings are interpreted in silico with the support of Hartree-Fock and density functional theory calculations of empty orbital energies and symmetries, and evaluation of the electron affinities of the indolic molecules under investigation. The only fragment anions formed by DEA to melatonin at incident electron energies below 2 eV are associated with the elimination of a hydrogen atom (energetically favored from the NH site of the pyrrole ring, leaving the ring intact) or a CH3· radical from the temporary molecular negative ion. Opening of the pyrrole ring of melatonin is not detected over the whole electron energy range of 0-14 eV. The DEA spectra of l- and d-tryptophan are almost identical under the present experimental conditions. The adiabatic electron affinity of melatonin is predicted to be -0.49 eV at the B3LYP/6-31+G(d) level, indicating that the DEA mechanism in melatonin is likely to be present in most life forms given the availability of low energy electrons in living systems in both plant and animal kingdoms. In particular, H atom donation usually associated with free-radical scavenging activity can be stimulated by electron attachment and N-H bond cleavage at electron energies around 1 eV.

Resonant scattering of positronium as a quasifree electron

In order to clarify the physics underlying the observations of the electronlike behavior of positronium (Ps) and its resonant scattering from CO2, we have measured the Ps+N2 total cross section and found it also to exhibit significant structure. Analysis of the resonances reveals that Ps is distorted in the collisions and classical trajectory Monte Carlo calculations indicate that the electron is on average closer to the target than the positron, which may in turn bind resonantly to the ensuing temporary negative ion. This description of the nature of Ps resonances agrees with long-standing theoretical predictions.

Formation and stabilization of C6− by radiative electron attachment

Radiative electron attachment (REA) plays an important role in forming molecular anions in various astrophysical environments. In this work, we determined the rate coefficient for the formation of C6− by REA based on a detailed balance approach. C6− ions are stored in an electrostatic ion beam trap and are photoexcited above their adiabatic detachment energy (4.18 eV). Due to fast internal conversion and intramolecular vibrational redistribution, photoexcitation leads to the formation of temporary negative ions (TNIs), the same as those one formed by the electron attachment. Absolute vibrational autodetachment and recurrent (or Poincaré) fluorescence (RF) rate coefficients have already been reported [V. Chandrasekaran et al., J. Phys. Chem. Lett. 5, 4078 (2014)]. Knowing the branching ratios of the various competing rate coefficients is decisive to the understanding of the formation probability of anions via REA. The radiative stabilization rate of C6−, shown to be dominated by RF, was determined to be 5 × 104 s−1 at the electron detachment energy, i.e., at least a factor of 100 faster than the stabilization by infrared transitions. The RF is found to very effectively stabilize the TNI formed by electron attachment. Using detailed balance to link the measured delayed detachment rate to the rate of electron attachment, we estimate the REA rate leading to the formation of C6− to be 3 × 10−7 cm3 s−1 at 300 K in agreement with theory (1.7 × 10−7 cm3 s−1 [R. Terzieva and E. Herbst, Int. J. Mass Spectrom. 201, 135 (2000)]). Such a high rate for REA to C6 indicates that REA may play a prominent role in the formation of anions in the interstellar medium.

Role of Resonance Electron Attachment in Phytoremediation of Halogenated Herbicides.

This study is aimed to point out the important role played by resonance electron attachment in reductive dehalogenation, in particular in phytoremediation of organic pollutants under conditions of excess negative charge. To model enzymatic reactions occurring in reductive conditions, low-energy electron capture by the halogenated herbicides atrazine and bromoxynil was studied in vacuo using electron transmission spectroscopy. A variety of decay channels of the temporary molecular negative ions was discovered by means of dissociative electron attachment spectroscopy. The experimental results were interpreted with the support of quantum-chemical calculations. Dehalogenation of atrazine and bromoxynil was found to be the dominant decay of the molecular negative ions formed at thermal energies of the incident electrons. It is concluded that formation of negative ions by electron donation in enzymatic active centers followed by their dissociation along the σ bond can be considered as the main mechanism of reductive dehalogenation.

Identification of overlapping resonances in dissociative electron attachment to chlorine molecules

A combined highly differential momentum imaging experiment and ab initio potential-energy curve calculation using density-functional theory (DFT) have been performed to understand the broad resonant peak around 5.7 eV due to dissociative electron attachment (DEA) to the chlorine molecule. Both the kinetic energy and angular distribution over the entire $2\ensuremath{\pi}$ angle of the fragment negative ions have been measured. Two heavily overlapping resonances are identified for the observed broad resonant peak that could settle the long-standing debate. The symmetry of the involved two temporary negative ion (TNI) states are determined from the angular distribution data. Experimental observations are strongly supported with the computed potential-energy curve using DFT.

On a simple way to calculate electronic resonances for polyatomic molecules.

We propose a simple method for calculation of low-lying shape electronic resonances of polyatomic molecules. The method introduces a perturbation potential and requires only routine bound-state type calculations in the real domain of energies. Such a calculation is accessible by most of the free or commercial quantum chemistry software. The presented method is based on the analytical continuation in a coupling constant model, but unlike its previous variants, we experience a very stable and robust behavior for higher-order extrapolation functions. Moreover, the present approach is independent of the correlation treatment used in quantum many-electron computations and therefore we are able to apply Coupled Clusters (CCSD-T) level of the correlation model. We demonstrate these properties on determination of the resonance position and width of the (2)Πu temporary negative ion state of diacetylene using CCSD-T level of theory.

Low-Energy Electron Interaction with the Phosphate Group in DNA Molecule and the Characteristics of Single-Strand Break Pathways.

We modeled the low-energy electron attachment to the sugar-phosphate-sugar (SPS) molecule for investigating the single-strand break (3' C-O and 5' C-O) at the DNA backbone. In particular, we predicted the electron capture at the phosphate center. We found that 0.6 eV electron can attach to the phosphate group, and the lifetime (∼40-55 fs) of the resulting temporary negative ion state is more than what we found for the lifetime of the metastable species (∼18-20 fs) formed at the cytosine base center. We treated the two competing dissociation channels in SPS molecule, that is, both the 3' C-O and 5' C-O lesions, separately. The activation energy barrier calculated for 5' C-O bond rupture is found to be less than that for 3' C-O bond dissociation. The overall low-energy electron transfer process is found to be mediated through a "shape resonance state" formed at the phosphate center.

Electron attachment to molecular clusters

SynopsisWe study experimentally and theoretically the effect of hydrogen bonding in the formation of molecular temporary negative ions. A new experimental set up enables us, for the first time, to perform electron scattering experiments with selected clusters. This selectivity facilitates the comparison with theoretical results.

Electron accommodation dynamics in the DNA base thymine.

The dynamics of electron attachment to the DNA base thymine are investigated using femtosecond time-resolved photoelectron imaging of the gas phase iodide-thymine (I(-)T) complex. An ultraviolet pump pulse ejects an electron from the iodide and prepares an iodine-thymine temporary negative ion that is photodetached with a near-IR probe pulse. The resulting photoelectrons are analyzed with velocity-map imaging. At excitation energies ranging from -120 meV to +90 meV with respect to the vertical detachment energy (VDE) of 4.05 eV for I(-)T, both the dipole-bound and valence-bound negative ions of thymine are observed. A slightly longer rise time for the valence-bound state than the dipole-bound state suggests that some of the dipole-bound anions convert to valence-bound species. No evidence is seen for a dipole-bound anion of thymine at higher excitation energies, in the range of 0.6 eV above the I(-)T VDE, which suggests that if the dipole-bound anion acts as a "doorway" to the valence-bound anion, it only does so at excitation energies near the VDE of the complex.

Dissociative electron attachments to ethanol and acetaldehyde: A combined experimental and simulation study

Dissociation dynamics of the temporary negative ions of ethanol and acetaldehyde formed by the low-energy electron attachments is investigated by using the anion velocity map imaging technique and ab initio molecular dynamics simulations. The momentum images of the dominant fragments O(-)/OH(-) and CH3 (-) are recorded, indicating the low kinetic energies of O(-)/OH(-) for ethanol while the low and high kinetic energy distributions of O(-) ions for acetaldehyde. The CH3 (-) image for acetaldehyde also shows the low kinetic energy. With help of the dynamics simulations, the fragmentation processes are qualitatively clarified. A new cascade dissociation pathway to produce the slow O(-) ion via the dehydrogenated intermediate, CH3CHO(-) (acetaldehyde anion), is proposed for the dissociative electron attachment to ethanol. After the electron attachment to acetaldehyde molecule, the slow CH3 (-) is produced quickly in the two-body dissociation with the internal energy redistributions in different aspects before bond cleavages.

ETS and DEAS studies of the reduction of xenobiotics in mitochondrial intermembrane space.

This chapter describes the complementary experimental techniques electron transmission spectroscopy (ETS) and dissociative electron attachment spectroscopy (DEAS), two of the most suitable means for investigating interactions between electrons and gas-phase molecules, resonance formation of temporary molecular negative ions, and their possible decay through the dissociative electron attachment (DEA) mechanism. The latter can be seen as the gas-phase counterpart of the transfer of a solvated electron in solution, accompanied by dissociation of the molecular anion, referred to as dissociative electron transfer (DET). DET takes place in vivo under reductive conditions, for instance, in the intermembrane space of mitochondria under interaction of xenobiotic molecules with electrons "leaked" from the respiration chain. Experimental procedures supported by suitable quantum chemical calculations are described in detail and illustrated by an example of ETS/DEAS study of rhodanine which shows rich fragmentation under gas-phase resonance electron attachment.

Time-resolved radiation chemistry: dynamics of electron attachment to uracil following UV excitation of iodide-uracil complexes.

Electron attachment to uracil was investigated by applying time-resolved photoelectron imaging to iodide-uracil (I(-)U) complexes. In these studies, an ultraviolet pump pulse initiated charge transfer from the iodide to the uracil, and the resulting dynamics of the uracil temporary negative ion were probed. Five different excitation energies were used, 4.00 eV, 4.07 eV, 4.14 eV, 4.21 eV, and 4.66 eV. At the four lowest excitation energies, which lie near the vertical detachment energy of the I(-)U complex (4.11 eV), signatures of both the dipole bound (DB) as well as the valence bound (VB) anion of uracil were observed. In contrast, only the VB anion was observed at 4.66 eV, in agreement with previous experiments in this higher energy range. The early-time dynamics of both states were highly excitation energy dependent. The rise time of the DB anion signal was ∼250 fs at 4.00 eV and 4.07 eV, ∼120 fs at 4.14 eV and cross-correlation limited at 4.21 eV. The VB anion rise time also changed with excitation energy, ranging from 200 to 300 fs for excitation energies 4.00-4.21 eV, to a cross-correlation limited time at 4.66 eV. The results suggest that the DB state acts as a "doorway" state to the VB anion at 4.00-4.21 eV, while direct attachment to the VB anion occurs at 4.66 eV.

Dynamics of Dissociative Electron–Molecule Interactions in Condensed Methanol

We have investigated the dynamics of low-energy (1–20 eV) electron-induced reactions in condensed thin films of methanol (CH3OH) through both electron-stimulated desorption (ESD) and postirradiation temperature-programmed desorption (TPD) experiments conducted under ultrahigh vacuum conditions. Results of ESD experiments, involving a high-sensitivity time-of-flight mass spectrometer, indicate that anion (H–, CH–, CH2–, CH3–, O–, OH–, and CH3O–) desorption from the methanol thin film at incident electron energies below about 15 eV is dominated by processes initiated by the dissociation of temporary negative ions of methanol formed via electron capture, a resonant process known as dissociative electron attachment (DEA). However, postirradiation TPD investigation of radicals, especially •CH2OH and CH3O• remaining in the methanol thin film, demonstrates that electron impact excitation, not DEA, is the primary mechanism by which the radical–radical reaction products methoxymethanol (CH3OCH2OH) and ethylene glycol (HOCH2CH2OH) are formed. This apparent dichotomy between the results of ESD and postirradiation experiments is attributed to the low DEA cross section for methanol compared to that of species such as halomethanes. Our results suggest that for molecules such as methanol, low-energy electron-induced electronic excitation, rather than DEA, plays a dominant role in ionizing radiation-induced chemical synthesis in environments such as the interstellar medium.

Resonance electron attachment to plant hormones and its likely connection with biochemical processes.

Gas-phase formation of temporary negative ion states via resonance attachment of low-energy (0-6 eV) electrons into vacant molecular orbitals of salicylic acid (I) and its derivatives 3-hydroxy- (II) and 4-hydroxybenzoic acid (III), 5-cloro salicylic acid (IV) and methyl salicylate (V) was investigated for the first time by electron transmission spectroscopy. The description of their empty-level structures was supported by density functional theory and Hartree-Fock calculations, using empirically calibrated linear equations to scale the calculated virtual orbital energies. Dissociative electron attachment spectroscopy (DEAS) was used to measure the fragment anion yields generated through dissociative decay channels of the parent molecular anions of compounds I-V, detected with a mass filter as a function of the incident electron energy in the 0-14 eV energy range. The most intense negative fragment produced by DEA to isomers I-III is the dehydrogenated molecular anion [M-H](-), mainly formed at incident electron energies around 1 eV. The vertical and adiabatic electron affinities were evaluated at the B3LYP/6-31+G(d) level as the anion/neutral total energy difference. The same theoretical method was also used for evaluation of the thermodynamic energy thresholds for production of the negative fragments observed in the DEA spectra. The gas-phase DEAS data can provide support for biochemical reaction mechanisms in vivo.

Temporary Anion States of Three Herbicide Families

Electron scattering studies are used to locate the energies of temporary negative ion states of three chloro-substituted molecular families of herbicidal importance: salicylic and phenoxyacetic acids and acetamides. The correlation between these energies and the computed virtual orbital energies of the compounds is examined and used to put the latter on an absolute energy scale. Such scaling of orbital energies permits the anion states of other members of these families, for which experimental data may not be available, to be estimated from the calculated orbital energies. Studies of electron reduction rates often rely on calculated LUMO energies as molecular descriptors. The use of measured anion energies as well as appropriately scaled orbital energies should serve to improve such studies in these and in related herbicides.

Electron attachment to indole and related molecules

Gas-phase formation of temporary negative ion states via resonance attachment of low-energy (0-6 eV) electrons into vacant molecular orbitals of indoline (I), indene (II), indole (III), 2-methylen-1,3,3-trimethylindoline (IV), and 2,3,3-trimethyl-indolenine (V) was investigated for the first time by electron transmission spectroscopy (ETS). The description of their empty-level structures was supported by density functional theory and Hartree-Fock calculations, using empirically calibrated linear equations to scale the calculated virtual orbital energies. Dissociative electron attachment spectroscopy (DEAS) was used to measure the fragment anion yields generated through dissociative decay channels of the parent molecular anions of compounds I-V, detected with a mass filter as a function of the incident electron energy in the 0-14 eV energy range. The vertical and adiabatic electron affinities were evaluated at the B3LYP∕6-31+G(d) level as the anion∕neutral total energy difference. The same theoretical method is also used for evaluation of the thermodynamic energy thresholds for production of the negative fragments observed in the DEA spectra. The loss of a hydrogen atom from the parent molecular anion ([M-H](-)) provides the most intense signal in compounds I-IV. The gas-phase DEAS data can provide support for biochemical reaction mechanisms in vivo involving initial hydrogen abstraction from the nitrogen atom of the indole moiety, present in a variety of biologically important molecules.

Total scattering cross sections for ethylene by electron impact for incident electron energies from 1 to 2000 eV

We report total scattering cross sections for C2H4 molecule by electron impact. Calculations are performed by using two different quantum mechanical methods and they cover the energy range from 1 to 2000 eV. For low energy calculations up to 15 eV, UK molecular R-matrix code through QUANTEMOL-N software is used, while intermediate to high energy (15–2000 eV) calculations were carried out by applying spherical complex optical potential formalism. Comparison is made with earlier measurements and theoretical data wherever available. A shape resonance is detected around 2 eV due to the 2B2g symmetry of an electronic state that corresponds to the temporary negative ion formation of ethylene. The differential cross sections are also calculated for the energy range from 1 to15 eV for the scattering angles between 0o and 180o. © 2013 Wiley Periodicals, Inc.