Strain B6 Research Articles

Synergistic degradation of phenanthrene by constructed Pseudomonas spp. consortium compared with pure strains

Polycyclic aromatic hydrocarbons (PAHs) are highly persistent compounds as well as they have a toxic impact to all living organisms. Removal of these xenobiotic compounds by mixed bacteria is achieving a maximum degradation rate over the pure strains. So, this study substantiates the application of constructed bacterial consortium for degradation of 400 mg/L phenanthrene within 30 days of incubation at 30 °C. The consortium consisted of two bacterial species Pseudomonas pseudoalcaligenes (B1) and Pseudomonas aeruginosa (B2). It exhibited a significantly higher phenanthrene degradation efficiency (97.5%) compared to pure strains B1 and B2 (52.5 and 47.6%), respectively. The phenanthrene degradation rate by the individual strains was enhanced in the presence of salicylic and phthalic acids as intermediates pathway. On the other side, the degradation rate was reduced in the presence of catechol suggesting a feedback inhibition of catabolic enzymes. The ring-cleavage dioxygenases were induced in all treatments. However, the induction of ortho cleavage dioxygenase (2.44 U/mg protein) was higher than meta cleavage dioxygenase (0.42 U/mg protein). Six main metabolites were detected by GC–MS analysis. Among them, four metabolites were detected in the extract of phenanthrene growing consortium suggesting three main pathways, phthalate, salicylic and benzocoumarin by the constructed consortium. Therefore, this study provides a measuring of phenanthrene degradation efficacy by bacterial consortium and paved the way to increase the potential of using the consortium for successful removal of PAHs from the polluted environment.

Profiles of Bacillus spp. Isolated from the Rhizosphere of Suaeda glauca and Their Potential to Promote Plant Growth and Suppress Fungal Phytopathogens.

Members of the genus Bacillus are known to play an important role in promoting plant growth and protecting plants against phytopathogenic microorganisms. In this study, 21 isolates of Bacillus spp. were obtained from the root micro-ecosystem of Suaeda glauca. Analysis of the 16S rRNA genes indicated that the isolates belong to the species Bacillus amyloliquefaciens, Bacillus velezensis, Bacillus subtilis, Bacillus pumilus, Bacillus aryabhattai and Brevibacterium frigoritolerans. One of the interesting findings of this study is that the four strains B1, B5, B16 and B21 are dominant in rhizosphere soil. Based on gyrA, gyrB, and rpoB gene analyses, B1, B5, and B21 were identified as B. amyloliquefaciens and B16 was identified as B. velezensis. Estimation of antifungal activity showed that the isolate B1 had a significant inhibitory effect on Fusarium verticillioides, B5 and B16 on Colletotrichum capsici (syd.) Butl, and B21 on Rhizoctonia cerealis van der Hoeven. The four strains grew well in medium with 1-10% NaCl, a pH value of 5-8, and promoted the growth of Arabidopsis thaliana. Our results indicate that these strains may be promising agents for the biocontrol and promotion of plant growth and further study of the relevant bacteria will provide a useful reference for the development of microbial resources.

Integrative multiomics analysis of the acid stress response of Oenococcus oeni mutants at different growth stages

BackgroundAcid stress is one of the most important environmental stresses that adversely affect the growth of lactic acid bacteria (LAB), such as Oenococcus oeni which was isolated from grape-berries and mainly used in wine fermentation. The aim of this paper is to comprehensively characterize the mechanisms of acid stress regulation in O. oeni and to provide a viable theoretical basis for breed and improvement of existing LAB. MethodFirst, six O. oeni mutants with acid-sensitive (strains b2, a1, c2) and acid-tolerant (strains b1, a3, c1) phenotypes were screened from three wild-type O. oeni, and then their genome (sequencing), transcriptome and metabolome (LC-MS/MS) were examined. ResultsA total of 459 genes were identified with one or more intragenic single nucleotide polymorphisms (SNPs) in these mutants, and were extensively involved in metabolism and cellular functions with a high mutation rates in purine (46%) and pyrimidine (48%) metabolic pathways. There were 210 mutated genes that cause significant changes in expression levels. In addition, 446 differentially accumulated metabolites were detected, and they were consistently detected at relatively high levels in the acid-tolerant O. oeni mutant. The levels of intracellular differentially expressed genes and differential metabolites changed with increasing culture time. ConclusionThe integrative pathways analysis showed that the intracellular response associated with acid regulation differed significantly between acid-sensitive and acid-tolerant O. oeni mutants, and also changed at different growth stages.

Saccharomyces Cerevisiae Var Boulardii CNCM I-1079 Reduces Expression of Genes Involved in Inflammatory Response in Porcine Cells Challenged by Enterotoxigenic E. Coli and Influences Bacterial Communities in an In Vitro Model of the Weaning Piglet Colon.

Enterotoxigenic Escherichia coli (ETEC) is the main infectious agent responsible for piglet post-weaning diarrhea with high mortality rates. Antimicrobials represent the current principal strategy for treating ETEC infections in pig farms, but the occurrence of multi-resistant bacterial strains has considerably increased in the last decades. Thus, finding non-antibiotic alternatives becomes a real emergency. In this context, we investigated the effect of a live yeast strain, Saccharomyces cerevisiae var boulardii CNCM I-1079 (SB) in an in vitro model of the weaning piglet colon implemented with a mucus phase (MPigut-IVM) inoculated with ETEC and coupled with an intestinal porcine cell line IPI-2I. We showed that SB was able to modulate the in vitro microbiota through an increase in Bacteroidiaceae and a decrease in Prevotellaceae families. Effluents collected from the SB treated bioreactors were able to mitigate the expression level of genes encoding non-gel forming mucins, tight junction proteins, innate immune pathway, and pro-inflammatory response in IPI-2I cells. Furthermore, SB exerted a significant protective effect against ETEC adhesion on porcine IPEC-J2 intestinal cells in a dose-dependent manner and showed a positive effect on ETEC-challenged IPEC-J2 by lowering expression of genes involved in pro-inflammatory immune responses. Our results showed that the strain SB CNCM I-1079 could prevent microbiota dysbiosis associated with weaning and protect porcine enterocytes from ETEC infections by reducing bacterial adhesion and modulating the inflammatory response.

Potential bifunctional rhizobacteria from crude oil sludge for hydrocarbon degradation and biosurfactant production

Biosurfactant produced by rhizobacteria has the potential to enhance the degradation of hydrocarbons, leading to more efficient phytoremediation. The aim of this work was to search for bifunctional hydrocarbon-degrading and biosurfactant-producing rhizobacteria. Isolation of bacteria was conducted from three sources (A: rhizosphere of Scirpus grossus planted in garden soils and B: rhizosphere of S. grossus planted in crude oil sludge and C: crude oil sludge) prior to degradation test. Seven isolated rhizobacteria from source B (coded as B1–B7) were screened for a hydrocarbon degradation test with an initial total petroleum hydrocarbon content of 56.13 mg/g. Similar isolated rhizobacteria were also found in source A and C. The best three isolates (B1, B3 and B6) and mixed culture of them, significantly degraded hydrocarbon with 16.2%, 8.4%, 39.7% and 34.8% removals, respectively. Subsequently, the three pure rhizobacteria and their mixture (B1 + B3 + B6) were screened for biosurfactant production through tests of oil displacement, drop collapse, emulsification and surface tension. All the pure rhizobacteria and mixed culture had given positive response for all the tests. The presence of biosurfactant produced by rhizobacteria was confirmed by SEM images in which the formation of exopolymers interconnecting individual cells into a complex network of mass was formed due to biosurfactant extraction from bacteria cell. Thus, the three isolated rhizobacteria (B1, B3, and B6), later identified as Bacillus sp. strain SB1, Bacillus sp. strain SB3 and Lysinibacillus sp. strain SB6, respectively, and their mixed culture can simultaneously biodegrade hydrocarbon and produce biosurfactant to enhance the degradation process.

Commensal Streptococcus mitis produces two different lipoteichoic acids of type I and type IV.

The opportunistic pathogen Streptococcus mitis possesses, like other members of the Mitis group of viridans streptococci, phosphorylcholine (P-Cho)-containing teichoic acids (TAs) in its cell wall. Bioinformatic analyses predicted the presence of TAs that are almost identical with those identified in the pathogen Streptococcus pneumoniae, but a detailed analysis of S. mitis lipoteichoic acid (LTA) was not performed to date. Here, we determined the structures of LTA from two S. mitis strains, the high-level beta-lactam and multiple antibiotic resistant strain B6 and the penicillin-sensitive strain NCTC10712. In agreement with bioinformatic predictions, we found that the structure of one LTA (type IV) was like pneumococcal LTA, except the exchange of a glucose moiety with a galactose within the repeating units. Further genome comparisons suggested that the majority of S. mitis strains should contain the same type IV LTA as S. pneumoniae, providing a more complete understanding of the biosynthesis of these P-Cho-containing TAs in members of the Mitis group of streptococci. Remarkably, we observed besides type IV LTA, an additional polymer belonging to LTA type I in both investigated S. mitis strains. This LTA consists of β-galactofuranosyl-(1,3)-diacylglycerol as glycolipid anchor and a poly-glycerol-phosphate chain at the O-6 position of the furanosidic galactose. Hence, these bacteria are capable of synthesizing two different LTA polymers, most likely produced by distinct biosynthesis pathways. Our bioinformatics analysis revealed the prevalence of the LTA synthase LtaS, most probably responsible for the second LTA version (type I), among S. mitis and Streptococcus pseudopneumoniae strains.

Stenotrophomonas strain CPCC 101271, an intestinal lifespan-prolonging bacterium for Caenorhabditis elegans that assists in host resistance to \u201cBacillus nematocida\u201d colonization

The soil-dwelling, opportunistic pathogenic bacterium "Bacillus nematocida" B16 exhibits strong killing activities against a variety of pathogenic nematodes via a “Trojan horse” mechanism that can kill worm species like Caenorhabditis elegans. The bacterial strain CPCC 101271 was previously isolated from the intestines of C. elegans that were recovered from natural habitats and can serve as a probiotic for C. elegans, while also assisting in resistance to infection by the pathogenic strain B16. In this study, the lifespan of C. elegans fed with strain CPCC 101271 cells was extended by approximately 40% compared with that of worms fed with Escherichia coli OP50 cells. In addition, the colonization of C. elegans by the pathogenic bacterium "B. nematocida" B16 was inhibited when pre-fed with strain CPCC 101271. Metagenomic sequence analysis of intestinal microbiota of C. elegans fed with strain CPCC 101271 and infected with B16 revealed that pre-feeding worms with CPCC 101271 improved the diversity of the intestinal bacteria. Moreover, community structure significantly varied in coordination with Stenotrophomonas spp. and Bacillus spp. abundances when competition between strains CPCC 101271 and B16 was evaluated. In conclusion, the nematode microbiota strain CPCC 101271 assisted in its host resistance to colonization by the pathogen "Bacillus nematocida" and can also promote life span-prolongation in C. elegans. These results underscore that understanding the interactions between C. elegans microbiota and pathogens can provide new insights into achieving effective biological control of agricultural pests.

Reliable determination of the growth and hydrogen production parameters of the photosynthetic bacterium Rhodobacter capsulatus in fed batch culture using a combination of the Gompertz function and the Luedeking-Piret model

In this study, experimental results of hydrogen producing process based on anaerobic photosynthesis using the purple non-sulfur bacterium Rhodobacter capsulatus are scrutinized. The bacterial culture was carried out in a photo-bioreactor operated in a quasi-continuous mode, using lactate as a carbon source. The method is based on the continuous stirred tank reactors (CSTR) technique to access kinetic parameters. The dynamic evolution of hydrogen production as a function of time was accurately simulated using Luedeking-Piret model and the growth of R. capsulatus was computed using Gompertz model. The combination of both models was successfully applied to determine the relevant parameters (λ, μmax, α and β) for two R. capsulatus strains studied: the wild-type strain B10 and the H2 over-producing mutant IR3. The mathematical description indicates that the photofermentation is more promising than dark fermentation for the conversion of organic substrates into biogas.

Molecular characterization of oral bacteria isolated from human saliva

Periodontitis is an inflammation of gums and bones that supporting the teeth which caused by Staphylococcus intermedius. The saliva from a patient of periodontitis or suspect to periodontitis will have higher levels of Staphylococcus intermedius. Hence, human saliva is clinically informative in diagnosing oral disease and the oral health of an individual. In this study, oral bacteria in human saliva were identified using 16S ribosomal RNA. 16S ribosomal RNA (rRNA) genes from the isolated colonies were amplified through the colony Polymerase Chain Reaction (PCR) method. 16S rRNA genes were used to determine species identity by sequencing and generating the phylogenetic tree. The results showed that Streptococcus sp. and Staphylococcus sp. were the most prevalent oral bacteria found from all the saliva samples, while Lactobacillus sp. was found from two samples. From the constructed phylogenetic trees, bacteria strains B1 and B2 clustered with the Staphylococcus sp. database. Bacteria strains B9 and B10 were categorized as Streptococcus sp. as the confidential level between Streptococcus sp. database is 100% in Neighbour-Joining tree. Sample B15 and B16 clustered with Lactobacillus sp. database. Oral bacteria species typically associated with periodontitis was detected in all saliva samples. Therefore, it is important to fully understand the nature of the oral bacteria before further research on drug design and administration of oral treatment is executed.

Spectroscopic and computational investigations of organometallic complexation of group 12 transition metals by methanobactins from Methylocystis sp. SB2

Methanotrophic bacteria catalyze the aerobic oxidation of methane to methanol using Cu-containing enzymes, thereby exerting a modulating influence on the global methane cycle. To facilitate the acquisition of Cu ions, some methanotrophic bacteria secrete small modified peptides known as “methanobactins,” which strongly bind Cu and function as an extracellular Cu recruitment relay, analogous to siderophores and Fe. In addition to Cu, methanobactins form complexes with other late transition metals, including the Group 12 transition metals Zn, Cd, and Hg, although the interplay among solution-phase configurations, metal interactions, and the spectroscopic signatures of methanobactin-metal complexes remains ambiguous. In this study, the complexation of Zn, Cd, and Hg by methanobactin from Methylocystis sp. strain SB2 was studied using a combination of absorbance, fluorescence, extended x-ray absorption fine structure (EXAFS) spectroscopy, and time-dependent density functional theory (TD-DFT) calculations. We report changes in sample absorbance and fluorescence spectral dynamics, which occur on a wide range of experimental timescales and characterize a clear stoichiometric complexation dependence. Mercury L3-edge EXAFS and TD-DFT calculations suggest a linear model for HgS coordination, and TD-DFT suggests a tetrahedral model for Zn2+ and Cd2+. We observed an enhancement in the fluorescence of methanobactin upon interaction with transition metals and propose a mechanism of complexation-hindered isomerization drawing inspiration from the wild-type Green Fluorescent Protein active site. Collectively, our results represent the first combined computational and experimental spectroscopy study of methanobactins and shed new light on molecular interactions and dynamics that characterize complexes of methanobactins with Group 12 transition metals.

Enhanced sludge reduction during swine wastewater treatment by the dominant sludge-degrading strains Chryseobacterium sp. B4 and Serratia sp. H1

Sludge reduction is considered a main target for sludge treatment and an urgent issue for wastewater treatment. In this study, two dominant sludge-degrading strains, identified as Chryseobacterium sp. B4 and Serratia sp. H1, were used for inoculation in swine wastewater treatment to investigate the enhancement of sludge reduction. The results showed the volatile suspended solid (VSS) removal rate in experimental groups inoculated with Chryseobacterium sp. B4, Serratia sp. H1, and a combination of the two strains improved by 49.4%, 11.0%, and 30.5%, compared with the control with no inoculation. Furthermore, microbial community structure and functional prediction analyses indicated Proteobacteria, Firmicutes, Bacteroidetes and Actinobacteria could play an essential role in sludge reduction, and the dominant sludge-degrading strains B4 and H1 enhanced sludge reduction by strengthening carbohydrate, nucleotide, amino acid, and lipid metabolism and membrane transport functions. This study provides new insights into sludge reduction during wastewater treatment with dominant sludge-degrading strains.

Antipathogenic and probiotic potential of Lactobacillus brevis strains newly isolated from Algerian artisanal cheeses.

From 98 Lactobacillus strains, isolated from Algerian homemade cheeses, 14 (B1-B14) were selected based on their anti-Escherichia coli and anti-Staphylococcus aureus activities. These strains were also tested towards Listeria monocytogenes 161 and Salmonella Typhimurium LT2 and further investigated for their resistance to simulated gastrointestinal digestion, cell surface properties, ability to adhere to HT-29 cells, cholesterol lowering, antioxidant activity, and technological traits. Five isolates (B9, B13, B18, B19, and B38) were active against L. monocytogenes and Salmonella. From them, three isolates, identified as Lactobacillus brevis (B9, B13, and B38) by MALDI-TOF spectrometry and 16S rDNA sequencing, exhibited high tolerance to pancreatic juice, bile salts and acidic juices, high percentages of hydrophobicity (87, 92, and 81%, respectively), auto-aggregation (61, 68, and 72%, respectively), and adherence to HT-29 cells (79, 84, and 74%, respectively), which testify on their potential of colonization of the human intestine. On the other way, the strains B9 and B13 manifested the most relevant antioxidant activity and cholesterol-lowering ability, respectively. L. brevis strains showed low acidifying and good proteolytic activities with noticeable heat tolerance. The results gathered in this study highlighted the richness of Algerian artisanal cheeses on new lactobacilli strains with an excellent probiotic potential and demonstrated that L. brevis, largely used as nonstarter in cheese manufacture, could be exploited also as a probiotic for human use.

Cytokine Secretion, Viability, and Real-Time Proliferation of Apical-Papilla Stem Cells Upon Exposure to Oral Bacteria.

The use of stem cells from the apical papilla (SCAPs) has been proposed as a means of promoting root maturation in permanent immature teeth, and plays a significant role in regenerative dental procedures. However, the role of SCAPs may be compromised by microenvironmental factors, such as hypoxic conditions and the presence of bacteria from infected dental root canals. We aim to investigate oral bacterial modulation of SCAP in terms of binding capacity using flow cytometry and imaging, real-time cell proliferation monitoring, and cytokine secretion (IL-6, IL-8, and TGF-β isoforms) under anaerobic conditions. SCAPs were exposed to key species in dental root canal infection, namely Actinomyces gerensceriae, Slackia exigua, Fusobacterium nucleatum, and Enterococcus faecalis, as well as two probiotic strains, Lactobacillus gasseri strain B6 and Lactobacillus reuteri (DSM 17938). We found that A. gerensceriae, S. exigua, F. nucleatum, and E. faecalis, but not the Lactobacillus probiotic strains bind to SCAPs on anaerobic conditions. Enterococcus faecalis and F. nucleatum exhibited the strongest binding capacity, resulting in significantly reduced SCAP proliferation. Notably, F. nucleatum, but not E. faecalis, induce production of the proinflammatory chemokine IL-8 and IL-10 from SCAPs. Production of TGF-β1 and TGF-β2 by SCAPs was dependent on species, cell line, and time, but secretion of TGF-β3 did not vary significantly over time. In conclusion, SCAP response is compromised when exposed to bacterial stimuli from infected dental root canals in anaerobic conditions. Thus, stem cell-mediated endodontic regenerative studies need to include microenvironmental conditions, such as the presence of microorganisms to promote further advantage in the field.

Exploring the properties of chitinolytic Bacillus isolates for the pathogens biological control

Plant fungal diseases generate serious losses in the agriculture. The bacteria producing biologically active substances that inhibit the growth of fungal pathogens can be an alternative to the chemicals. The chitinolytic bacteria were isolated from the rhizosphere of wheat (Triticum aestivum L.) and their physiological properties which may be useful in the promotion of plant growth have been investigated. Their chitinases and antifungal activity were studied. The isolates were also tested for indirect growth-promoting traits such as ammonia production, siderophore production, hydrogen cyanide production, and salicylic acid production. Two chitinolytic strains B3 and B5 were identified as Bacillus subtilis and Bacillus sp., respectively. They produced active chitinases on a medium containing shrimp shell powder. The purified chitinases having the molecular weight of 35–45 kDa inhibited the growth of important plant pathogens such as Alternaria alternata, and Fusarium oxysporum. Additionally, the isolates showed the ability to produce a broad range of biological substances promoting the growth of plants.

Phylogenetic characterization and screening of halophilic bacteria from Algerian salt lake for the production of biosurfactant and enzymes

Environments containing significant concentration of NaCl such as salt lakes harbor extremophiles microorganisms which have a great biotechnology interest. To explore the diversity of Bacteria in Chott Tinsilt (Algeria), an isolation program was performed. Water samples were collected from the saltern during the pre-salt harvesting phase. This Chott is high in salt (22.47% (w/v). Seven halophiles Bacteria were selected for further characterization. The isolated strains were able to grow optimally in media with 10–25% (w/v) total salts. Molecular identification of the isolates was performed by sequencing the 16S rRNA gene. It showed that these cultured isolates included members belonging to the Halomonas, Staphylococcus, Salinivibrio, Planococcus and Halobacillus genera with less than 98% of similarity with their closest phylogenetic relative. The halophilic bacterial isolates were also characterized for the production of biosurfactant and industrially important enzymes. Most isolates produced hydrolases and biosurfactants at high salt concentration. In fact, this is the first report on bacterial strains (A4 and B4) which were a good biosurfactant and coagulase producer at 20% and 25% ((w/v)) NaCl. In addition, the biosurfactant produced by the strain B4 at high salinity (25%) was also stable at high temperature (30-100°C) and high alkalinity (pH 11).

Allelic variation of the Tas1r3 taste receptor gene affects sweet taste responsiveness and metabolism of glucose in F1 mouse hybrids.

In mammals, inter- and intraspecies differences in consumption of sweeteners largely depend on allelic variation of the Tas1r3 gene (locus Sac) encoding the T1R3 protein, a sweet taste receptor subunit. To assess the influence of Tas1r3 polymorphisms on feeding behavior and metabolism, we examined the phenotype of F1 male hybrids obtained from crosses between the following inbred mouse strains: females from 129SvPasCrl (129S2) bearing the recessive Tas1r3 allele and males from either C57BL/6J (B6), carrying the dominant allele, or the Tas1r3-gene knockout strain C57BL/6J-Tas1r3tm1Rfm (B6-Tas1r3-/-). The hybrids 129S2B6F1 and 129S2B6-Tas1r3-/-F1 had identical background genotypes and different sets of Tas1r3 alleles. The effect of Tas1r3 hemizygosity was analyzed by comparing the parental strain B6 (Tas1r3 homozygote) and hemizygous F1 hybrids B6 × B6-Tas1r3-/-. Data showed that, in 129S2B6-Tas1r3-/-F1 hybrids, the reduction of glucose tolerance, along with lower consumption of and lower preference for sweeteners during the initial licking responses, is due to expression of the recessive Tas1r3 allele. Hemizygosity of Tas1r3 did not influence these behavioral and metabolic traits. However, the loss of the functional Tas1r3 allele was associated with a small decline in the long-term intake and preference for sweeteners and reduction of plasma insulin and body, liver, and fat mass.

Beauveria bassiana for the control of leafcutter ants: strain and host differences

ABSTRACT Leafcutter ants are a serious pest for forestry plantations and crops in Latin America. They have been traditionally controlled using chemical synthetic pesticides, which are known to have many negative effects to non-target organisms and the environment. Therefore, there is an urgent need for the development of alternative strategies of control, among which the biological control using fungal pathogens is a promising one. We evaluated in laboratory 3 strains of Beauveria bassiana (B5, B6, B7) against workers from 4 to 7 field colonies from 5 species of Acromyrmex leafcutter ant species which are considered pests in the region. Our results showed that all strains were pathogenic, although there are some ant species that turned out to be more susceptible either due to their intrinsic immunity or the natural load of pathogens they carried. The three strains were similarly effective for 3 of the 5 species, A. ambiguus, A. crassispinus, and A. lundii, being responsible for more than 80% of their mortality overriding the effect of their natural pathogens. Only strain B6 was able to kill a similar percentage of ants of A. heyeri, and strain B7 half of them. B5 in A. heyeri, as well as all three strains in A. lobicornis, were responsible for up to 30% of the mortality, but with the additive effect of the pathogens naturally brought by these ants accounted for a 70% of their mortality. We recommend using B6 to test the control of Acromyrmex leaf-cutting ants in the field.

Biodegradation of alkylphenols by rhizosphere microorganisms isolated from the roots of Hosta undulata

The present study was conducted for the bioremediation of alkylphenols using rhizosphere microorganisms isolated from the roots of land plant. Three land plants (Hosta undulata, Anemone flaccida, and Aquilegia flabellate var. pumila) were used to analyze the tolerance against petroleum hydrocarbons and alkylphenols. The plant Hosta undulata showed the tolerance against petroleum hydrocarbons (500 mg kg−1) and one of the alkylphenol, i.e., 4-tert-butylphenol (4-t-BP). Hence, thirty bacterial and thirteen fungal strains were isolated from the 4-t-BP contaminated soil collected from the roots of this plant. Biodegradation of alkylphenols was investigated using the isolated bacteria and fungi. Decrement in the alkylphenols concentration was analyzed using high pressure liquid chromatography (HPLC). Fungi showed higher 4-t-BP degradation than bacteria. Strain SB-4 (Penicillium pinophilum) showed 76.8 %, and strain SB-7 (Trichoderma asperellum) showed 49.2 % degradation of 4-t-BP. Apart from 4-t-BP, strain SB-7 degraded other alkylphenols such as 4-sec-butylphenol, 4-tert-octylphenol, and 4-nonylphenol. The major metabolites produced during alkylphenols degradation with strain SB-7 were determined using Gas chromatography linked with mass spectrometry (GC–MS). The results showed that the plant Hosta undulata had tolerance against the toxic compounds, and the rhizosphere microorganisms isolated from the roots of this plant might be applied for the bioremediation of alkylphenols contaminated soils.

Uji Multilokasi Sepuluh Galur Padi Untuk Menghasilkan Varietas Unggul Baru

Reduced productive rice fields to non-paddy fields, most possible extension of the nationalrice cultivation area to the suboptimal lands reaching ± 91.9 million ha. Technologypackages that can be applied include the use of new improved rice varieties through theassembling of varieties that have high yield potential, resistant to suboptimal soil stress. Theobjective of the research is to produce new superior rice varieties that are available invarious environments. The study used a split-plot design, as the main plot is an environmentconsisting of rice paddies and gogo, as a subplot is the genotype of rice. The treatment ineach environment is prepared using the Randomized Complete Block Design (RCBD). Thetreatment consisted of 10 new rice strains and four varieties as a comparison. Variablesobserved (1) plant height; (2) the maximum number of shoots; (3) number of productiveshoots; (4) long panicle; (5) the number of grains per panicle; (6) the amount of graincontent of each panicle; (7) the number of empty grains per panicle; (8) weight of 1000grains of grain; (9) grain yield of each clump; (10) grain yield per hectare. Data wereanalyzed by variance if there was a difference between mean, median treatment, followed byLsd test at 5% level. The adaptability and yield stability of each strain was determined basedon the value of the coefficient of diversity (KK) (Francis and Kenneberg, 1978) in Syukur etal., (2012). The results showed that seven new rice strains had adaptations both planted asupland rice and lowland rice, namely strains B3, B4, F2, F3, H1, H4, and L2.

Candidate Regulators of Dyslipidemia in Chromosome 1 Substitution Lines Using Liver Co-Expression Profiling Analysis.

Dyslipidemia is a major risk factor for cardiovascular disease. Although many genetic factors have been unveiled, a large fraction of the phenotypic variance still needs further investigation. Chromosome 1 (Chr 1) harbors multiple gene loci that regulate blood lipid levels, and identifying functional genes in these loci has proved challenging. We constructed a mouse population, Chr 1 substitution lines (C1SLs), where only Chr 1 differs from the recipient strain C57BL/6J (B6), while the remaining chromosomes are unchanged. Therefore, any phenotypic variance between C1SLs and B6 can be attributed to the differences in Chr 1. In this study, we assayed plasma lipid and glucose levels in 13 C1SLs and their recipient strain B6. Through weighted gene co-expression network analysis of liver transcriptome and “guilty-by-association” study, eight associated modules of plasma lipid and glucose were identified. Further joint analysis of human genome wide association studies revealed 48 candidate genes. In addition, 38 genes located on Chr 1 were also uncovered, and 13 of which have been functionally validated in mouse models. These results suggest that C1SLs are ideal mouse models to identify functional genes on Chr 1 associated with complex traits, like dyslipidemia, by using gene co-expression network analysis.