Next-generation light sources based on the multibend achromat concept place great reliance on the accuracy of beam dynamics modeling. To ensure the success of such light sources, confirmation of design performance with at least two independent codes is prudent. The APS Upgrade (APS-U) lattice has been designed using the code elegant, which has existing and new features that are needed by the design. Corresponding, independent improvements have recently been made to the accelerator toolbox (at), in order to permit an independent check of nonlinear dynamics predictions. The new developments include the modeling of combined-function bending magnets with straight geometry and improved fringe field effects of quadrupole magnets. Calculations of linear and nonlinear lattice parameters and particle tracking results were compared, showing remarkable agreement was found between the two independently developed codes. This provides significant confirmation of the feasibility of the APS-U design.