John P. Richardson Department of Chemistry Programs in Biochemistry and Molecular, Cellular and Developmental Biology Indiana University Bloomington, Indiana 47405 Transcriptional terminators have three important functions in gene expression. One is as asignal that defines the end of transcription unit for a gene or a group of genes. These operonic terminators are essential elements of gene orga- nization because they allow for the totally independent expression of adjacent sequences on a DNA molecule. In addition, terminators are found either between genes expressed under control of a single promoter or in the region between the promoter and the first gene of the operon. These intergenic terminators serve to modulate the relative level of expression of different genes in an operon or even the whole operon itself, as in the case of attenuator regulation. Finally, terminators have also been found within genes. However, these intragenic terminators are latent and func- tion only when translation becomes uncoupled from tran- scription either by a mutational change in the gene or by certain forms of metabolic stress, such as starvation for an amino acid. They thus prevent continued synthesis of an unused transcript. Although intragenic terminators have been known to exist for fifteen years, details of their properties have been largely ignored. Some recent papers on the analysis of details of the structure and function of several representative examples of intragenic terminators in E. coli has focused attention again on their role and on the mechanistic properties that give them their latency (Wek et al., 1987; Ruteshouser and Richardson, 1989; Tsurushita et al., 1989; Alifano et al., 1991). Transcripts synthesized by action of E. coli RNA poly- merase are terminated by two distinct mechanisms (re- viewed by Yager and von Hippel, 1987; Platt, 1988). One involves a spontaneous release of an RNA molecule at a particular set of sequences; the other requires the action of an RNA release factor called rho. Over most sequences, transcriptional elongation is highly processive-the na- scent RNA is very stably attached in its complex with RNA polymerase and the DNA template. However, at certain limited sets of sequences, this stability drops to the point that the RNA molecules are spontaneously released. These intrinsic terminators are characterized by 40 bp of DNA that start with a GC-rich segment with an interrupted dyad symmetry followed by about six adenosine residues on the template strand. Release occurs when the tran- script has been extended to the end of those residues. The details of why this particular set of sequences serve intrinsically to terminate transcription have been analyzed in depth (Yager and von Hippel, 1991) and are the focus of further intensive studies (Reynolds et al., 1991).
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