AbstractDespite significant advancements in fabricating covalent organic frameworks (COFs) with diverse morphologies, creating COFs with superhelical nanostructures remains challenging. We report here the controlled synthesis of homochiral superhelical COF nanofibers by manipulating pendent alkyl chain lengths in organic linkers. This approach yields homochiral 3D COFs 13‐OR with a 10‐fold interpenetrated diamondoid structure (R=H, Me, Et, nPr, nBu) from enantiopure 1,1′‐bi‐2‐naphthol (BINOL)‐based tetraaldehydes and tetraamine. COF‐13‐OEt exhibits macroscopic chirality as right‐handed and left‐handed superhelical fibers, whereas others adopt spherical or non‐helical morphologies. Time‐tracking shows a self‐assembly process from non‐helical strands to single‐stranded helical fibers and intertwined superhelices. Ethoxyl substituents, being of optimal size, balance solvophobic effects and intermolecular interactions, driving the formation of superhelical nanostructures, with handedness determined by BINOL chirality. The superhelical nature of these materials is evident in their chiral recognition and spin‐filter properties, showing significantly improved enantiodiscrimination in carbohydrate binding (up to six times higher enantioselectivity) and a remarkable chiral‐induced spin selectivity (CISS) effect with a 48–51 % spin polarization ratio, a feature absent in non‐helical analogs.