The aim of the present study was to induce malolactic fermentation (MLF) after alcoholic fermentation (AF) of must of the Moschofilero cultivar, the only ‘gris’ native grape variety that is cultivated in Greece. For this purpose, Oenococcus oeni strains Viniflora® CH16, Viniflora® Oenos and Viniflora® CiNe were inoculated after the completion of AF driven by the Saccharomyces cerevisiae strain UCLM S325. Growth of the aforementioned starter cultures was assessed during fermentation by classical microbiological techniques, and verification of their dominance was performed by (GTG)5 fingerprinting. Assessment of standard enological parameters and colorimetric analysis were performed by established approaches. Identification and quantification of organic acids, ethanol and glycerol was performed by high performance liquid chromatography (HPLC), while the solid-phase microextraction method (SPME), coupled with gas chromatography/mass spectrometry (GC/MS), was employed for the identification and quantification of volatile compounds. Finally, sensory analysis took place according to ISO 13299:2016. The suitability of the starter cultures employed to drive AF and MLF was exhibited; AF and MLF of the white and rosé wines were completed after 15 days. Upon completion of AF, substantial differences were observed in the chemical characteristics of the white and rosé wines, which were also reflected in the balance descriptor. MLF also resulted in significant changes. In all cases total acidity decreased and volatile acidity and pH value increased, while the vanilla and butter descriptors increased. Interestingly, the color intensity of the rosé wines also increased. A series of strain-dependent changes in the chemical composition and sensory analysis of both white and rosé wines was also observed.