This study uncovered the response of novel micro-granule wastewater treatment technology to different powder carrier materials. Characteristics and distinctions among different systems were assessed based on process performance, sludge aggregation capacity, and microbial metabolism. Zeolite carrier system exhibited remarkable nitrogen removal efficiency of 89.6 ± 0.9 %, while diatomite carriers, in conjunction with intermittent aeration, enhanced simultaneous nitrification and denitrification from 2.6 % to 27.1 %. Iron-based carriers demonstrated efficient phosphorus removal (94.7 ± 1.2 %) through both chemical and microbial pathways. Specific surface area, pore structure and biocompatibility of powder carriers determined the formation and size of micro-granules. Tryptophan-like substances, C-(C/H), and Npr in extracellular polymeric substances strongly correlated with sludge hydrophobicity and granulation. Significant enrichment in norank_Comamonadaceae and Nitrosomonas in zeolite powder carrier system promoted partial nitrification and endogenous denitrification. Differences in metabolic pathways elucidated the up-regulation of amino acid synthesis, energy metabolism, and membrane transport as potential mechanisms driving micro-granule formation and efficient treatment performance.