Wetlands are crucial ecosystems that are increasingly threatened by anthropogenic activities. L'Albufera Natural Park, the second-largest coastal wetland in Spain, faces significant pressures from surrounding agricultural lands, industrial activities, human settlements, and associated infrastructures, including treated wastewater inputs. This study aimed at (i) establishing pathways of emerging pollutants entering the natural wetland using both target and non-target screening (NTS) for management purposes, (ii) distinguishing specific contamination hotspots through Geographic Information System (GIS) and (iii) performing basic ecological risk assessment to evaluate ecosystem health. Two sampling campaigns were conducted in the spring and summer of 2019, coinciding with the start and end of the rice cultivation season, the region's primary agricultural activity. Each campaign involved the collection of 51 samples. High-resolution mass spectrometry (HRMS) was employed, using a simultaneous NTS approach with optimized gradients for pesticides and moderately polar compounds, along with complementary NTS methods for polar compounds, to identify additional contaminants of emerging concern (CECs). Quantitative analysis revealed that fungicides comprised a substantial portion of detected CECs, constituting approximately 50% of the total quantified pesticides. Tebuconazole emerged as the predominant fungicide, with the highest mean concentration (>16.9 μg L−1), followed by azoxystrobin and tricyclazole. NTS tentatively identified 16 pesticides, 43 pharmaceuticals and personal care products (PPCPs), 24 industrial compounds, and 12 other CECs with high confidence levels. Spatial distribution analysis demonstrated significant contamination predominantly in the southwestern region of the park, gradually diminishing towards the north-eastern outlet. The composition of contaminants varied between water and sediment samples, with pharmaceuticals predominating in water and industrial compounds in sediments. Risk assessment, evaluated through risk quotient calculations based on parent compound concentrations, revealed a decreasing trend towards the outlet, suggesting wetland degradation capacity. However, significant risk levels persist throughout much of the Natural Park, highlighting the urgent need for mitigation measures to safeguard the integrity of this vital ecosystem.
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