RPB2 Sequence Data Research Articles

Additions to Occultibambusaceae (Pleosporales, Dothideomycetes): Unrevealing Palmicolous Fungi in China

During a survey of microfungi associated with palms from karst formations, three novel ascomycetes were found from decaying petioles of Trachycarpus fortunei (Arecaceae) in Guizhou, China. Multi-gene phylogenetic analyses based on a combined SSU, ITS, LSU, RPB2 and TEF1α sequence data showed that these collections were affiliated to Brunneofusispora and Neooccultibambusa in the family Occultibambusaceae. A new species Brunneofusispora inclinatiostiola is introduced. It is phylogenetically close to B. clematidis but represents a distinct lineage. Morphologically, it differs from the latter in having immersed ascomata with eccentric, periphysate ostiole and smaller ascospores. Morpho-phylogenetic evidence also revealed two new Neooccultibambusa species, N.kaiyangensis and N. trachycarpi. Together with the generic type N. chiangraiensis, they formed a distinct lineage within the genus Neooccultibambusa. Three novel palmicolous fungi of Occultibambusaceae are described, illustrated and notes on their identification are provided. The ecological significance of the new taxa and the phylogenetic relationship of genera in Occultibambusaceae is discussed.

Morphology and Phylogeny Reveal Vamsapriyaceae fam. nov. (Xylariales, Sordariomycetes) with Two Novel Vamsapriya Species.

Phylogenetic analyses of combined LSU, rpb2, tub2 and ITS sequence data of representative Xylariales taxa indicated that Diabolocovidia, Didymobotryum and Vamsapriya cluster together and form a distinct clade in Xylariales. Morphological comparison also shows their distinctiveness from other families of Xylariales. Therefore, we introduce it as a novel family, Vamsapriyaceae. Based on morphological characteristics, Podosporium and Tretophragmia, which were previously classified in Ascomycota genera incertae sedis, are now included in the Vamsapriyaceae. In addition, three Vamsapriya species, V. chiangmaiensis sp. nov, V. uniseptata sp. nov, and V. indica are described and illustrated in this paper.

Ganoderma (Ganodermataceae, Basidiomycota) Species from the Greater Mekong Subregion.

The cosmopolitan fungal genus Ganoderma is an important pathogen on arboreal plant hosts, particularly in tropical and temperate regions. It has long been used as a traditional medicine because of its medicinal properties and chemical constituents. In this study, Ganoderma collections were made in the Greater Mekong Subregion (GMS), encompassing tropical parts of Laos, Myanmar, Thailand, Vietnam, and temperate areas in Yunnan Province, China. The specimens used in this study are described based on micro-macro-characteristics and phylogenetic analysis of combined ITS, LSU, TEF1α, and RPB2 sequence data. In this comprehensive study, we report 22 Ganoderma species from the GMS, namely, G. adspersum, G. applanatum, G. australe, G. calidophilum, G. ellipsoideum, G. flexipes, G. gibbosum, G. heohnelianum, G. hochiminhense, G. leucocontextum, G. lucidum, G. multiplicatum, G. multipileum, G. myanmarense, G. orbiforme, G. philippii, G. resinaceum, G. sichuanense, G. sinense, G. subresinosum, G. williamsianum, and G. tsugae. Some of these species were reported in more than one country within the GMS. Of these 22 species, 12 were collected from Yunnan Province, China; three were collected from Laos; three species, two new records, and one new species were collected from Myanmar; 15 species and four new records were collected from Thailand, and one new species was collected from Vietnam. Comprehensive descriptions, color photographs of macro- and micro-characteristics, the distribution of Ganoderma within the GMS, as well as a phylogenetic tree showing the placement of all reported Ganoderma from the GMS are provided.

Yuxiensis granularis gen. et sp. nov., a Novel Quellkörper-Bearing Fungal Taxon Added to Scortechiniaceae and Inclusion of Parasympodiellaceae in Coronophorales Based on Phylogenetic Evidence.

An undetermined saprobic fungal taxon from Yunnan (China) is revealed as a new genus in Scortechiniaceae (Coronophorales). The novel taxon, Yuxiensis, is characterized by immersed to erumpent, semi-globose ascomata, which are not surrounded by any tomentum or conspicuous subiculum, a subcylindrical quellkörper in the centrum, clavate asci with long pedicels and allantoid hyaline ascospores with granular contents. Maximum likelihood and Bayesian posterior probability analyses based on LSU, ITS, tef1 and rpb2 sequence data depict a close phylogenetic relationship of the new genus to Pseudocatenomycopsis, hence, confirming its placement in Scortechiniaceae. Parasympodiellaceae, thus far belonging to Parasympodiellales, is transferred to Coronophorales based on multi-gene phylogenetic evidence. Additionally, the incertae sedis monotypic genus Arthrocristula is treated as a synonym of Parasympodiella, with Arthrocristula hyphenata recombined as Parasympodiella hyphenata comb. nov., as the type strain of Arthrocristula hyphenata clusters inside the Parasympodiellaceae clade along with other Parasympodiella taxa.

A Taxonomic Appraisal of Bambusicolous Fungi in Occultibambusaceae (Pleosporales, Dothideomycetes) with New Collections from Yunnan Province, China.

During our ongoing studies of bambusicolous fungi in southwest China and Thailand, three saprobic pleosporalean taxa were discovered on bamboos in Yunnan Province of China. Occultibambusa hongheensis and Seriascoma bambusae spp. nov. are introduced based on morphological characteristics coupled with multi-locus phylogenetic analyses of combined LSU, SSU, TEF1-α, RPB2 and ITS sequence data. Occultibambusa kunmingensis is also reported from a terrestrial habitat for the first time. Comprehensive descriptions, color photo plates of micromorphology, and a phylogenetic tree showing the placements of these three taxa are provided. In addition, synopsis tables of Occultibambusa and Seriascoma with morphological features are also provided.

Additions to the microfungi in Taiwan: introducing Pseudorobillarda camelliae-sinensis sp. nov., (Pseudorobillardaceae) and new host records of pleosporalean taxa in mountainous habitats

A novel taxon, Pseudorobillarda camelliae-sinensis (Pseudorobillardaceae) and new host records of pleosporalean taxa viz. Neopyrenochaeta triseptatispora (Neopyrenochaetaceae), Ramusculicola thailandica (Teichosporaceae) and Vaginatispora palmae (Lophiostomataceae) resulted from our investigation of plant-associated microfungi in Alishan and Fenghuang Mountain ranges in Taiwan. These taxa were isolated from dicotyledonous hosts of Bignoniaceae, Caprifoliaceae, Meliaceae and Moraceae. Maximum likelihood and Bayesian inference analyses were performed using combined SSU, LSU, ITS, tef1-α and rpb2 sequence data to clarify the phylogenetic affinities of taxa. The newly described taxa of the current study are accompanied by comprehensive descriptions, micrographs and comparisons with similar species. In addition, the importance of exploiting fungi from mountain habitats in Taiwan is discussed.

Novel saprobic Hermatomyces species (Hermatomycetaceae, Pleosporales) from China (Yunnan Province) and Thailand.

During our survey of the diversity of woody litter fungi in China and Thailand, three Hermatomyces species were collected from dead woody twigs of Dipterocarpus sp. (Dipterocarpaceae) and Ehretiaacuminata (Boraginaceae). Both morphology and multigene analyses revealed two taxa as new species (Hermatomycesturbinatus and H.jinghaensis) and the remaining collections as new records of H.sphaericus. Hermatomycesturbinatus is characterized by 1) dimorphic conidia, having circular to oval lenticular conidia and 2) turbinate conidia consisting of two columns with two septa composed of 2–3 cells in each column. Hermatomycesjinghaensis is characterized by dimorphic conidia, having circular to oval lenticular conidia and clavate or subcylindrical to cylindrical conidia and consisting of one or two columns with 6–8 cells in each column. Phylogenetic analyses of combined LSU, ITS, tub2, tef1-α and rpb2 sequence data supports the placement of these new taxa within Hermatomycetaceae with high statistical support.

Insight into the Systematics of Novel Entomopathogenic Fungi Associated with Armored Scale Insect, Kuwanaspis howardi (Hemiptera: Diaspididae) in China.

This study led to the discovery of three entomopathogenic fungi associated with Kuwanaspis howardi, a scale insect on Phyllostachys heteroclada (fishscale bamboo) and Pleioblastus amarus (bitter bamboo) in China. Two of these species belong to Podonectria: P. kuwanaspidis X.L. Xu & C.L. Yang sp. nov. and P. novae-zelandiae Dingley. The new species P. kuwanaspidis has wider and thicker setae, longer and wider asci, longer ascospores, and more septa as compared with similar Podonectria species. The morphs of extant species P. novae-zelandiae is confirmed based on sexual and asexual morphologies. Maximum likelihood and Bayesian inference analyses of ITS, LSU, SSU, tef1-α, and rpb2 sequence data provide further evidence for the validity of the two species and their placement in Podonectriaceae (Pleosporales). The second new species, Microcera kuwanaspidis X.L. Xu & C.L. Yang sp. nov., is established based on DNA sequence data from ITS, LSU, SSU, tef1-α, rpb1, rpb2, acl1, act, cmdA, and his3 gene regions, and it is characterized by morphological differences in septum numbers and single conidial mass.

New epiphytic sooty molds: Alloscorias syngonii (Readerielliopsidaceae) from Thailand

A novel taxon was found as epiphytic sooty molds on Syngonium podophyllum from Thailand. A new genus, Alloscorias gen. nov. is established to accommodate a novel taxon, named A. syngonii. The morphological characters of the species are observed in culture. Phylogenetic analyses of a combined dataset of LSU, ITS, TEF-1α and RPB2 sequence data together with morphological support that Alloscorias is a distinct genus within Readerielliopsidaceae (Capnodiales). Detailed descriptions and illustrations are provided in this paper.

<p><strong><em>Pyrenochaetopsis kuksensis</em> (<em>Pyrenochaetopsidaceae</em>), a new species associated with an ornamental boxwood in the Czech Republic</strong></p>

During the investigation of fungal microbiome associated with boxwood in the Czech Republic, samples from Buxus sempervirens L. (Buxaceae) plants were collected and used for isolation. Two fungal strains were proposed as a new species Pyrenochaetopsis kuksensis based on morphology as well as phylogenetic analyses of ITS, LSU, rpb2, and tub2 sequence data. Detailed descriptions and phylogenetic relationships of the new taxon are provided.

Multigene Phylogeny and Morphology of Ophiocordyceps alboperitheciata sp. nov., A New Entomopathogenic Fungus Attacking Lepidopteran Larva from Yunnan, China

A new fungus, Ophiocordyceps alboperitheciata, parasitic on the larva of Noctuidae (Lepidoptera) was identified from a survey of entomopathogenic fungi in Kunming Wild Duck Forest Park, Yunnan Province, China. It can be primarily distinguished from relatives by its longer fertile parts, sterile tips, superficial perithecia, narrower asci, and smaller septa of ascospores. As revealed from phylogenetic analyses inferred from nrSSU, nrLSU, tef-1α, rpb1, and rpb2 sequence data, O. alboperitheciata belongs to the Hirsutella citriformis clade in the genus Ophiocordyceps of Ophiocordycipitaceae, and forms a separated clade from other related species. The uniqueness of the taxon is significantly evidenced by both molecular phylogeny and morphology. Furthermore, the interspecific relationships in the H. citriformis clade are discussed.

Phylogenetic placement and reassessment of Asperisporium pongamiae as Pedrocrousiella pongamiae gen. et comb. nov. (Mycosphaerellaceae).

The leaf spot disease of Pongamia pinnata caused by an asperisporium-like asexual morph, which is usually referred to as Asperisporium pongamiae, is quite common during monsoon seasons in India. Phylogenetic analyses, based on LSU and rpb2 sequence data, and blast searches using ITS sequence data, revealed that this ascomycete forms a lineage within Mycosphaerellaceae distant from all other generic lineages. Pedrocrousiella gen. nov., with P. pongamiae comb. nov., based on Fusicladium pongamiae (≡ A. pongamiae), as type species is introduced for this lineage. This species has been considered the asexual morph of Mycosphaerella pongamiae (≡ Stigmatea pongamiae). However, this connection is unproven and was just based on the occasional association of the two taxa in some collections. Several attempts to induce the formation of a sexual morph in culture failed, therefore the putative connection between these morphs could not be confirmed. Asperisporium pongamiae-pinnatae is reduced to synonymy with P. pongamiae. Asperisporium pongamiae-pinnatae was introduced because of the wrong assumption that F. pongamiae had been described on another host, Pongamia globosa. But Fusicladium pongamiae was actually described in India on Pongamia glabra, which is a synonym of P. pinnata, and hence on the same host as Asperisporium pongamiae-pinnatae. Pedrocrousiella pongamiae clusters in a clade containing Distocercospora, Clypeosphaerella, and "Pseudocercospora" nephrolepidicola, a species which is not congeneric with Pseudocercospora. Phylogenetically, Pedrocrousiella is distant from the Asperisporium s. str. clade (type species A. caricae), which is more closely related to Amycosphaerella, Pseudocercosporella, Distomycovellosiella and Nothopassalora. Citation: Rajeshkumar KC, Braun U, Groenewald JZ, Lad SS, Ashtekar N, Fatima S, Anand G (2021). Phylogenetic placement and reassessment of Asperisporium pongamiae as Pedrocrousiella pongamiae gen. et comb. nov. (Mycosphaerellaceae). Fungal Systematics and Evolution 7: 165-176. doi: 10.3114/fuse.2021.07.08.

<strong><em>Ophiocordyceps furcatosubulata</em>, a new entomopathogenic fungus parasitizing beetle larvae (Coleoptera: Elateridae) </strong>

A new invertebrate-associated fungus, Ophiocordyceps furcatosubulata, is reported from China, Vietnam and Laos. It is characterized by solitary stromata, clavate and slender stipes, cylindrical fertile parts, furcate and subulate sterile apices, immersed perithecia, short asci, filiform ascospores with multi-septa, short secondary ascospores, hirsutella-like asexual morph with polyphialidic conidiogenous cells, broadly ellipsoid or ellipsoid conidia, and on larvae of elaterid beetles buried in soil. Both morphological observation and phylogenetic analyses of combined nrSSU, nrLSU, tef-1α, rpb1 and rpb2 sequence data support that this fungus is a distinctive species in the genus Ophiocordyceps.

<p><strong>Introduction of <em>Neolophiotrema xiaokongense gen. et sp. nov.</em> to the poorly represented Anteagloniaceae (Pleosporales, Dothideomycetes)</strong></p>

The monotypic Neolophiotrema (typified by N. xiaokongense) is introduced for a wood-inhabiting taxon classified in Dothideomycetes. The genus is characterized by, coriaceous, immersed to semi-immersed ascomata, hamathecium with cellular pseudoparaphyses and overlapping 1–2-seriate, hyaline ascospores. Phylogenetic analysis of combined SSU, LSU, ITS, tef1-α and rpb2 sequence data supports the placement of Neolophiotrema in Anteagloniaceae (Pleosporales). A morphology-based synopsis key is provided to facilitate the identification of species of Anteagloniaceae. The classification and nature of species boundaries in Anteagloniaceae are discussed.

Three Novel Entomopathogenic Fungi From China and Thailand.

Entomopathogenic fungi are ubiquitous in tropical rainforests and feature a high level of diversity. This group of fungi not only has important ecological value but also medicinal value. Nevertheless, they are often ignored, and many unknown species have yet to be discovered and described. The present study aims to contribute to the taxonomical and phylogenetic understanding of the genus Paraisaria by describing three new species collected from Guizhou and Yunnan Provinces in China and Krabi Province in Thailand. The three novel species named Paraisaria alba, P. arcta, and P. rosea share similar morphologies as those in the genus Paraisaria, containing solitary, simple, fleshy stroma, completely immersed perithecia and cylindrical asci with thickened caps and filiform ascospores that often disarticulate at maturity. Phylogenetic analyses of combined LSU, SSU, TEF1-α, RPB1, RPB2, and ITS sequence data confirm their placement in the genus Paraisaria. In this study, the three entomopathogenic taxa are comprehensively described with color photographs and phylogenetic analyses. A synopsis table and a key to all treated species of Paraisaria are also included.

<p><strong><em>Mallocybe africana</em> (Inocybaceae, Fungi), the first species of <em>Mallocybe</em> described from Africa</strong></p>

The family Inocybaceae has been poorly studied in Africa. Here we describe the first species of the genus Mallocybe from West African and Zambian woodlands dominated by ectomycorrhizal trees of Fabaceae and Phyllanthaceae. The new species M. africana is characterized by orange-brown fruitbodies, a fibrillose pileus, a stipe tapered towards the base and large ellipsoid basidiospores. It resembles many north and south temperate species of Mallocybe but is most closely related to the southeast Asian tropical species, M. errata. M. africana is widely distributed in West Africa (Benin, Togo, Burkina Faso and Ivory Coast) extending to South-eastern Africa in Zambia. Phylogenetic analyses based on 5.8S rDNA, nLSU and RPB2 sequence data confirm that M. africana is nested within Mallocybe. A complete morphological description and illustrations, including photographs and line drawings, are presented.

Aspergillus quadrilineatus revealed to be fungicolous on Phlebopus spongiosus from northern Thailand

Fungicolous fungi are able to grow on both cultivable and wild mushrooms as saprotrophs, mycoparasites or symbionts. These taxa are capable of causing deformations or decomposition of mushrooms and can also be potential pathogens on cultivable mushrooms, thereby causing both yield and quality losses. Therefore, accurate identification and investigation of taxonomic diversity of the fungicolous taxa associated with mushrooms would be beneficial for disease management strategies and quarantine purposes in the mushroom industry. During a cultivation trial to grow Phlebopus spongiosus on soil, the mushrooms were contaminated with an Aspergillus species. Multi-locus phylogeny based on combined ITS, tub2, cam and rpb2 sequence data and morphological characters revealed the fungicolous contaminant to be A. quadrilineatus. Herein A. quadrilineatus is described with complete descriptions, illustration and a phylogenetic tree of Aspergillus section Nidulantes to show its placement. This study is the first report of A. quadrilineatus as a fungicolous species on Phlebopus spongiosus.

Three novel species and a new record of Daldinia (Hypoxylaceae) from Thailand

In an investigation of stromatic Xylariales in Thailand, several specimens of Daldinia were discovered. Three novel species (D. flavogranulata, D. phadaengensis, and D. chiangdaoensis) were recognized from a molecular phylogeny based on concatenated ITS, LSU, RPB2, and TUB2 sequence data, combined with morphological characters and secondary metabolite profiles based on high performance liquid chromatography coupled to diode array detection and mass spectrometry (HPLC-MS). The major components detected were cytochalasins (in D. flavogranulata and D. chiangdaoensis) and daldinin type azaphilones (in D. phadaengensis). In addition, D. brachysperma, which had hitherto only been reported from America, was found for the first time in Asia. Its phylogenetic affinities were studied, confirming previous suspicions from morphological comparisons that the species is closely related to D. eschscholtzii and D. bambusicola, both common in Thailand. Daldinia flavogranulata, one of the new taxa, was found to be closely related to the same taxa. The other two novel species, D. phadaengensis and D. chiangdaoensis, share characters with D. korfii and D. kretzschmarioides, respectively.

<p><strong><em>Akanthomyces lepidopterorum</em></strong><strong>, a new lecanicillium-like species</strong></p>

During a survey of entomopathogenetic fungi from Southwest China, a new species, Akanthomyces lepidopterorum was found on an undetermined lepidopteran larva. It differs from other species based on mostly smaller conidia, mononematous conidiophores and moderate length of phialide. Both the morphological identification and phylogenetic analysis of combined ITS, LSU and RPB2 sequence data support A. lepidopterorum as a new species. A new combination is also proposed in the genus Akanthomyces.

Molecular phylogeny and morphology reveal cryptic species in Blackwellomyces and Cordyceps (Cordycipitaceae) from Thailand

Nine species in Cordyceps sensu lato producing orange to red stromata were discovered during diversity surveys of arthropod-pathogenic fungi in Thailand. The phylogenetic analyses of combined ITS, LSU, RPB1, RPB2 and TEF1 sequence data indicated four novel species belonging to Blackwellomyces and five novel species of Cordyceps. All Blackwellomyces species produce filiform ascospores with septations. Blackwellomyces aurantiacus and Blackwellomyces roseostromatus occur on lepidopteran larvae, and both species produce an Evlachovaea-like conidial arrangement of the anamorph and produce a red pigment that diffuses across agar medium. Blackwellomyces calendulinus and Blackwellomyces minutus are found on coleopteran larvae producing Acremonium-like and Mariannaea-like conidial arrangements of their anamorphs and do not produce any pigment. Novel members of Cordyceps include the species Cordyceps brevistroma, Cordyceps inthanonensis, Cordyceps neopruinosa, and Cordyceps parvistroma that are pathogenic on lepidopteran larvae and cocoons, whereas C. araneae is pathogenic on spiders. All Cordyceps species produce bola-shaped, whole ascospores, except for C. inthanonensis that produces ascospores dissociating into part-spores. A common feature of the novel Cordyceps species presented herein is the production of Evlachovaea-like or Mariannaea-like conidial arrangement of the anamorphs.