Room Temperature Tryptophan Phosphorescence Research Articles

Direct excitation of tryptophan phosphorescence. A new method for triplet states investigation

We studied room temperature phosphorescence of tryptophan (TRP) embedded in poly (vinyl alcohol) films. With UV (285 nm) excitation, the phosphorescence spectrum of tryptophan appears at about 460 nm. We also observed the TRP phosphorescence with blue light excitation at 410 nm, well outside of the S0 →S1 absorption. This excitation reaches the triplet state of tryptophan directly without the involvement of the singlet excited state. The phosphorescence lifetime of tryptophan is in the sub-millisecond range. The long-wavelength direct excitation to the triplet state results in high phosphorescence anisotropy which can be useful in macromolecule dynamics study via time-resolved phosphorescence.

Room temperature phosphorescence study on the structural flexibility of single tryptophan containing proteins

In this study, we have undertaken efforts to find correlation between phosphorescence lifetimes of single tryptophan containing proteins and some structural indicators of protein flexibility/rigidity, such as the degree of tryptophan burial or its exposure to solvent, protein secondary and tertiary structure of the region of localization of tryptophan as well as B factors for tryptophan residue and its immediate surroundings. Bearing in mind that, apart from effective local viscosity of the protein/solvent matrix, the other factor that concur in determining room temperature tryptophan phosphorescence (RTTP) lifetime in proteins is the extent of intramolecular quenching by His, Cys, Tyr and Trp side chains, the crystallographic structures derived from the Brookhaven Protein Data Bank were also analyzed concentrating on the presence of potentially quenching amino acid side chains in the close proximity of the indole chromophore. The obtained results indicated that, in most cases, the phosphorescence lifetimes of tryptophan containing proteins studied tend to correlate with the above mentioned structural indicators of protein rigidity/flexibility. This correlation is expected to provide guidelines for the future development of phosphorescence lifetime-based method for the prediction of structural flexibility of proteins, which is directly linked to their biological function.

Impact of maltose modified poly(propylene imine) dendrimers on liver alcohol dehydrogenase (LADH) internal dynamics and structure

The toxicity of cationic dendrimers is one of their most important drawbacks. Modification of the surface of those dendrimers is a way to obtain compounds that are tolerable by living organisms. However, the sole knowledge how such modifications influence the toxicity of dendrimers is not enough. It is also important to know how such modifications influence the ability of dendrimers to interact with biomolecules, as such interactions may be responsible for dendrimers fate in vivo. In this study the ability of poly(propylene imine) dendrimers of the fourth generation (G4 PPI) with surface modified with maltose moieties to interact with horse liver alcohol dehydrogenase (LADH) was examined. Fluorescence, room temperature tryptophan phosphorescence (RTTP), circular dichroism (CD), dynamic light scattering (DLS) and zeta potential measurements were applied to fully investigate those interactions. As a result, an ability of all studied G4 PPI dendrimers to interact with LADH was shown. However, the differences in the strength of influence of dendrimers on different parts of protein, depending on the dendrimer surface structure, were observed. All dendrimers increased flexibility of the core part of LADH to a similar degree. However, changes in LADH secondary structures upon the interaction with dendrimers depended on the type of the dendrimer. Additionally, experiments performed allowed us to propose the most probable part of LADH that is the subject of the structural changes as the cleft between catalytic and coenzyme binding subdomains of LADH.

Room-temperature tryptophan phosphorescence of proteins of isolated human erythrocyte membranes

Results of phosphorescent analysis of proteins incorporated into an erythrocyte membrane in the native state and after depleting it of peripheral proteins of both the spectrin-actin network (bands 1, 2, and 5) and bands 2.1-2.3, 4.1, 4.2, and 6 are presented. We also investigated the ability of peripheral proteins extracted from membranes to produce room-temperature tryptophan phosphorescence in solution.

Tryptophan phosphorescence study of the influence of detergents on the internal dynamics of human erythrocyte membrane proteins

Room-temperature tryptophan phosphorescence was used to assess the slow (millisecond) internal dynamics of proteins in isolated human erythrocyte membranes under the action of detergents: dodecylsulfate, lauroyl sarcosinate, deoxycholate, digitonin, and Tween 20 (concentrations varied from 0.01 to 6 mM). All detergents markedly enhanced the slow internal dynamics, but the dose-response patterns were specific for each agent. The aggregate data support the idea that the slow internal dynamics is restricted in membrane proteins relative to soluble proteins mostly because of intramembrane protein association and isolation from the aqueous milieu, with a possible contribution of a more rigid secondary structure.

Tryptophan phosphorescence study of the internal dynamics of human erythrocyte membrane proteins upon spectrin modification

Room-temperature tryptophan phosphorescence has been used analyze the slow (millisecond) internal dynamics of proteins in isolated native human erythrocyte membranes, after removal of 95% of spectrin, and after thermal denaturation of spectrin or medium acidification to pH 6.0–4.0, as well as the internal dynamics of spectrin extracted from the membrane in solution. The integral membrane proteins prove to differ sharply from spectrin in their structural and dynamic state. The millisecond movements of structural elements in integral proteins are considerably hindered as compared with spectrin. Removal of the bulk of spectrin from membranes leads to amplification of slow fluctuations in the structure of integral proteins. This suggests involvement of spectrin in the control of the structural and dynamic state of the erythrocyte membrane proteins. The acidification of the medium to pH 6.0–4.0 decreases the internal dynamics of native membrane proteins, which is explained by the pH-induced aggregation of spectrin. After thermal denaturation of spectrin, there is no pH-induced increase in the rigidity of the structure of membrane proteins.

Effect of temperature on the internal dynamics and the conformational state of bacterial alkaline phosphatase

Room-temperature tryptophan phosphorescence and fluorescence have been used to study the slow internal dynamics and the conformational state of Escherichia coli alkaline phosphatase in the temperature range from 0 to 100°C. The heating of alkaline phosphatase solution within the 0–70°C range has been shown to amplify considerably the internal dynamics. The further raise of temperature to 95°C brings about a reversible increase in the internal dynamics and partial unfolding of the globule. The heating of protein solution within a narrow temperature range of 97–100°C gives rise to irreversible conformational transition with complete globule unfolding, sharp amplification of the internal dynamics, and loss of enzymatic activity.

Monitoring of actin unfolding by room temperature tryptophan phosphorescence.

Slow intramolecular mobility of native and inactivated actin from rabbit skeletal muscle during the process of protein unfolding induced by GdnHCl was studied using tryptophan room temperature phosphorescence (RTP). By this method, the conclusion was confirmed that an essentially unfolded intermediate preceded the formation of inactivated actin [Turoverov et al. Biochemistry (2002) 41, 1014-1019]. It was found that the kinetic intermediate generated at the early stage of protein denaturation has no tryptophan RTP, suggesting the high lability of its structure. Symbate changes of integral intensity and the mean lifetime of RTP during the U* --> I transition suggests a gradual increase of the number of monomers incorporated in the associate (U* --> I(1)... --> I(n)... --> I(15)), which is accompanied by an increase of structural rigidity. The rate of inactivated actin formation (I identical with I(15)) is shown to increase with the increase of protein concentration. It is shown that, no matter what the means of inactivation, actin transition to the inactivated state is accompanied by a significant increase of both integral intensity and the mean lifetime of RTP, suggesting that inactivated actin has a rigid structure.

Slow internal dynamics of membrane proteins in mechanisms of protease-induced aggregation of platelets.

Room temperature tryptophan phosphorescence (RTTP) of suspensions of human platelets was studied. RTTP spectra and decay kinetics of both intact platelets and those after short-term incubation with low concentrations of thrombin or trypsin (0.3-50 microg/ml) were investigated. Protease-induced changes in the RTTP lifetime of platelets were observed, and interpreted in terms of the slow internal dynamics of membrane protein modification. The functional role of membrane protein internal dynamics is discussed in the context of platelet aggregation and signal transduction processes.

Hydrogen Exchange at the Core of Escherichia coli Alkaline Phosphatase Studied by Room-Temperature Tryptophan Phosphorescence

The room-temperature tryptophan (Trp) phosphorescence lifetime is sensitive to details of the local environment and has been shown to increase significantly in some proteins following H-D exchange. Careful analysis of the phosphorescence lifetime distribution of Trp 109 in Escherichia coli alkaline phosphatase (AP) in solution as a function of time during the H-D exchange shows that this process corresponds to a two-state reaction resulting from the deuteration of a single, specific hydrogen in the core of the protein. The absence of a pH dependence of the exchange rate suggests that the exchange is not an EX2 process, and therefore, a certain degree of unfolding is required for exchange to occur. This discovery opens up the use of phosphorescence-detected hydrogen exchange as a sensitive tool for monitoring the local susceptibility and activation energy for exchange in proteins having a phosphorescent Trp and, for example, for studying the effects of local mutations upon that susceptibility.

Room Temperature Phosphorescence from Tryptophan and Halogenated Tryptophan Analogs in Amorphous Sucrose

Abstract. Tryptophan phosphorescence lifetime and quantum yield are sensitive to the local environment. The phosphorescence from tryptophan analogs, however, has not been studied. We report here data on the room temperature phosphorescence of tryptophan, 4‐, 5‐ and 6‐fluoro‐DL‐tryptophan (4‐F‐trp, 5‐F‐trp and 6‐F‐trp) and 5‐bromo‐DL‐tryptophan (5‐Br‐trp) embedded in glassy powders of freeze‐dried sucrose. In aqueous solution, the absorption of the analogs was either blue‐shifted (4‐F‐trp), red‐shifted (5‐F‐trp and 5‐Br‐trp) or not shifted (6‐F‐trp) with respect to tryptophan. The phosphorescence emission spectra of all analogs were red‐shifted compared to trp (442 nm) with maxima at 446 nm (5‐F‐trp), 451 mn (6‐F‐trp), 452 nm (5‐Br‐trp) and 469 nm (4‐F‐trp). The 5‐F‐trp and 6‐F‐trp analogs had emission intensities similar to tryptophan (relative quantum yields of 0.68 and 0.91, respectively, compared to tryptophan), while the intensities of the 4‐F and 5‐Br analogs were lower (relative quantum yields of 0.039 and 0.022, respectively). All analogs exhibited complex decay behavior requiring several exponentials for an adequate fit; the average lifetimes were all lower than that of trp (1039 ms). The average lifetimes of the fluorinated analogs (5‐F, 721 ms; 6‐F, 482 ms and 4‐F, 35 ms) scaled approximately with the relative quantum yields while that of 5‐Br (0.53 ms) was significantly lower. Analysis of the individual lifetimes suggested that the fluorinated analogs differ in their sensitivity to environmental interactions, with 5‐F‐ and 6‐F‐trp quenched 1.5‐2‐fold and 4‐F‐trp about 23‐fold more efficiently than tryptophan. The red‐shifted 5‐F‐trypto‐phan analog, which has been incorporated into proteins, may provide an alternative phosphorescence probe for selective phosphorescence detection of a specific protein in a complex mixture.

4] Time-resolved room temperature tryptophan phosphorescence in proteins

The application of luminescence, primarily fluorescence, to the study of protein structure and dynamics has been extensively exploited to facilitate the understanding of complex biological problems. The interest in the application of phosphorescence, however, shows that new and complementary information can be had by careful optical studies of the phosphorescence lifetime. As in the early days of fluorescence spectroscopy in proteins, a complete and rigorous interpretation of the room temperature phosphorescence remains to be developed; nevertheless, it is clear that time-resolved phosphorescence yields new information on proteins in solution, for example, the detection of subtle conformational changes during protein folding, which is outside the sensitivity of earlier techniques. In addition, the great sensitivity of the phosphorescence lifetime to structural changes associated with rigidity and of nearby quenchers suggests that detailed structural information can be obtained when this approach is combined with the power of site-directed mutagenesis or other more biophysical techniques such as energy transfer to attached acceptors. We have presented basic aspects of time-resolved room temperature phosphorescence spectroscopy and demonstrated some useful features of the spectroscopic signals as well as the general approach to data analysis. However, it should be understood that extensions of this approach will easily allow faster and improved time resolution with greater sensitivity to highly quenched phosphorescing states. In addition, many extensions of this approach that are common to fluorescence spectroscopy have yet to be developed. For example, combining time-resolved phosphorescence with anaerobic stopped-flow techniques and more rapid data acquisition electronics will enable studies of conformational dynamics with considerably shortened dead times. Other possibilities include extending the preliminary studies of in vivo-based spectroscopy, such as to microscopy. In conclusion, time-resolved phosphorescence presents a new dimension to biophysical methodologies for the study of proteins, and it is likely that this area will continue to grow in capability as the fundamental understanding improves.

In vitro renaturation of bovine beta-lactoglobulin A leads to a biologically active but incompletely refolded state.

When bovine beta-lactoglobulin (beta-LG) was refolded after extensive denaturation in 4.8 M guanidine hydrochloride (GuHCl), the functional activity of the protein, retinol binding, as measured by the enhancement of this ligand's fluorescence, was completely recovered. In contrast, the room-temperature tryptophan phosphorescence lifetime of the refolded protein, a local measure of the residue environment, was approximately 10 ms, significantly shorter than the phosphorescence lifetime of the untreated native protein (approximately 20 ms). The lability of the freshly refolded protein, as monitored by following the time course of its unfolding when incubated in 2.5 M GuHCl through the change in fluorescence intensity at 385 nm, was also determined and found to be increased significantly relative to untreated native protein. In contrast to the long term postactivation conformational changes detected previously in Escherichia coli alkaline phosphatase (Subramaniam V, Bergenhem NCH, Gafni A, Steel DG, 1995, Biochemistry 34:1133-1136), we found no changes in either the lability or phosphorescence decays of beta-LG during a period of 24 h. Our results are in agreement with the report by Hattori et al. (1993, J Biol Chem 268:22414-22419), using conformation-specific monoclonal antibodies to recognize native-like structure, that long-term changes occur in the protein conformation, compared with the native structure, on refolding.

Time-resolved tryptophan phosphorescence spectroscopy: a sensitive probe of protein folding and structure

Room-temperature tryptophan phosphorescence from proteins is a sensitive probe of the local structural environment of the luminescent amino acid. Tryptophan phosphorescence lifetimes can vary over 3-4 orders of magnitude depending on the structural rigidity of the emitter environment and the proximity of quenching interactions, and this sensitivity can be used to characterize the local structural environment of the chromophore. Tryptophan phosphorescence lifetime can be easily monitored as a function of time, and thus is capable of producing effectively real-time information on dynamic processes in proteins. We discuss the origins and characteristics of tryptophan phosphorescence, and its application to monitoring folding processes in proteins and to studying protein conformation and flexibility. We also present the extension of phosphorescence techniques to study, for the first time, triplet emission at room temperature from tryptophan residues engineered into specific positions as reporters of protein structure.

Lack of correspondence between the room-temperature phosphorescence decay-components and Trp residues in a series of Trp→Cys or Trp→Phemutants of human carbonic anhydrase II

The room temperature phosphorescence of native human carbonic anhydrase (CA), and several mutants of this enzyme has been investigated. In these mutants the seven tryptophan residues in the native protein have sequentially been replaced by cysteine or phenylalanine. All of the mutants as well as native CA show room-temperature tryptophan phosphorescence (RTP) spectra. Surprisingly, only small differences in RTP life-times are noticeable among these mutants, indicating that there is more than one tryptophan residue with similar phosphorescence decay kinetics in the protein. The present results illustrate the danger in attributing the room temperature phosphorescence of a multi-tryptophan protein to a particular residue based solely on an analysis of the protein structure.

Detection of intermediate protein conformations by room temperature tryptophan phosphorescence spectroscopy during denaturation of Escherichia coli alkaline phosphatase

The reversible denaturation of Escherichia coli alkaline phosphatase (AP) was followed by monitoring changes in enzymatic activity as well as by measurements of the time-resolved room temperature phosphorescence from Trp 109. It is well known that the denaturants, ethylene diamine tetraacetic acid (EDTA), acid and guanidine hydrochloride (GdnHCI) inactivate AP by different mechanisms as reflected by differences in the time dependence of inactivation. However, further information about structural changes that result during inactivation is obtained by measurement of the phosphorescence intensity and radiative decay rate. Time-resolved tryptophan phosphorescence is exquisitely sensitive to changes in the local environment of the emitting residue, unlike the steady state phosphorescence intensity which is a composite of both the lifetime and concentration of the emitting protein species. The results show that while inactivation in EDTA proceeds by loss of the zinc ion as expected, denaturation in acid or GdnHCl produces a heterogeneous population of AP molecules, detected by a distribution analysis of the phosphorescence lifetime, which may reflect multiple pathways to the final unfolded state. Time-resolved phosphorescence also demonstrates the existence of an enzymatically active but structurally less rigid intermediate state during unfolding. As the rigidity decreases, the susceptibility to further denaturation decreases at lower pH but increases with GdnHCl concentration. The experiments provide new insight into the mechanism of denaturation of AP and demonstrate the sensitivity of time-resolved room temperature phosphorescence to the structural details of intermediate states produced during unfolding of proteins.

Penetration of analogues of H2O and CO2 in proteins studied by room temperature phosphorescence of tryptophan.

The influence of the protein matrix on the reactivity of external molecules with a species buried within the protein interior is considered in two general ways: (1) there may be structural fluctuations that allow for the diffusive penetration of the small molecules and/or (2) the external molecule may react over a distance. As a means to study the protein matrix, a reactive species within the protein can be formed by exciting tryptophan to the triplet state, and then the reaction of the triplet-state molecule with an external molecule can be monitored by a decrease in phosphorescence. In this work, the quenching ability (i.e., reactivity) was examined for H2S, CS2, and NO2- acting on tryptophan phosphorescence in parvalbumin, azurin, horse liver alcohol dehydrogenase, and alkaline phosphatase. A comparison of charged versus uncharged quenchers (H2S vs SH- and CS2 vs NO2-) reveals that the uncharged molecules are much more effective than charged species in quenching the phosphorescence of fully buried tryptophan, whereas the quenching for exposed tryptophan is relatively independent of the charge of the quencher. This is consistent with the view that uncharged triatomic molecules can penetrate the protein matrix to some extent. The energies of activation of the quenching reaction are low for the charged quenchers and higher for the uncharged CS2. A model is presented in which the quenchability of a buried tryptophan is inversely related to the distance from the surface when diffusion through the protein is the rate-limiting step.(ABSTRACT TRUNCATED AT 250 WORDS)

Intrinsic tryptophan phosphorescence as a marker of conformation and oxygen diffusion in purified cytochrome oxidase

Cytochrome oxidase exhibits phosphorescence from trytophan in aqueous solution in the absence of oxygen. The lifetime for the resting reduced enzyme suspended in Tween-20 is around 30 ms at pH 8. The lifetime is longest between pH 7 and 8 and decreases with lowering of pH. Oxygen quenches the phosphorescence with a Stern-Volmer quenching constant of ∼5 × 10 7 M −1 s −1 at 5°C whereas cytochrome c has no effect. We interpret these results to indicate that room temperature tryptophan phosphorescence arises from trytophan(s) in structured region(s) remote from the hemes and that the protein does not impose a significant barrier for the diffusion of oxygen.

Quenching of room temperature protein phosphorescence by added small molecules.

A number of molecular agents that can efficiently quench the room temperature phosphorescence of tryptophan were identified, and their ability to quench the phosphorescence lifetime of tryptophan in nine proteins was examined. For all quenchers, the quenching efficiency generally follows the same sequence, namely, N-acetyltryptophanamide (NATA) greater than parvalbumin approximately lactoglobulin approximately ribonuclease T1 greater than liver alcohol dehydrogenase greater than aldolase greater than Pronase approximately edestin greater than azurin greater than alkaline phosphatase. Quenching rate constants for O2 and CO are relatively insensitive to protein differences, while H2S and CS2 are somewhat more sensitive. These small molecule agents appear to act by penetrating into the proteins. However, penetration to truly buried tryptophans is less favorable than previously suggested; in five proteins studied, quenching efficiency by O2 is 20-1000 times lower than for NATA, and up to 10(5) lower for H2S and CS2. Larger and more polar quenchers--including organic thiols, conjugated ketones and amides, and anionic species--were also studied. The efficiency of these quenchers does not correlate with quencher size or polarity, the quenching reaction has low energy of activation, and quenching rates are insensitive to solvent viscosity. These results indicate that the larger quenchers do not approach the buried tryptophans by penetrating into the proteins, even on the long phosphorescence time scale, and are also inconsistent with a mechanism in which quencher encounter with the tryptophan occurs in free solution, as in a protein-opening reaction. The results obtained suggest that the quenching process involves a long-range radiationless transfer.(ABSTRACT TRUNCATED AT 250 WORDS)

Effects of external heavy atoms and other factors on the room-temperature phosphorescence and fluorescence of tryptophan and tyrosine

Effects of external heavy atoms and other factors on the room-temperature phosphorescence and fluorescence of tryptophan and tyrosine