California River Research Articles

Dilemmas of Sustainability in Cocopah Territory: An Exercise of Applied Visual Anthropology in the Colorado River Delta

Cocopah fishermen defend their right to fish on ancestral lands in the Upper Gulf of California and Colorado River Delta Biosphere Reserve (The Biosphere Reserve) against the state and economic forces that do not acknowledge indigenous rights. Women play an important role in organizing and leading Cocopah resistance by demanding the rights to remain in their territory and use natural resources especially for fishing. Employing collaborative applied research methods, this study was shaped by contributions from the Cocopah, exemplifying the role they play in organizing and leading political issues. The goal is to collaboratively develop strategies which Cocopah fishermen can effectively use to exercise their rights to fish on ancestral territory in the Colorado River Delta. This article explores theoretical and methodological questions that emerged during this collaborative research on the context of Cocopah fishing politics.

Summer vs. winter: Examining the temporal distribution of avian biodiversity to inform conservation

ABSTRACT Winter habitat quality plays a key role in avian population regulation, and conservation of winter habitat is a priority for waterfowl, shorebirds, and Neotropical migrant landbirds. Yet, there has been little discussion of the importance of conserving temperate wintering habitat for landbirds, including the billions of Neotemperate migratory landbirds that winter in the United States. The value and impact of conservation initiatives in the U.S. could be maximized by accommodating the habitat requirements of bird communities throughout the full annual cycle, particularly in the southern and western U.S. where winter species richness is concentrated. To estimate the degree to which winter bird communities should be a conservation priority, we examined the temporal distribution of avian diversity using riparian habitat in the lower Cosumnes River and lower Putah Creek watersheds in California's Central Valley. We used hierarchical multispecies occupancy models to estimate seasonal species richness ...

Effects of hydrologic event history on the suspended-sediment behavior of a central California river

Effects of hydrologic event history on the suspended-sediment behavior of a central California river

Spatial and Temporal Distribution of Spawning Events and Habitat Characteristics of Sacramento River Green Sturgeon

AbstractSpawning of the Southern Distinct Population Segment of Green Sturgeon Acipenser medirostris occurs annually within the Sacramento River in California. Artificial substrate samplers were used to collect Green Sturgeon eggs between 2008 and 2012 and in a reach of the river 94 river kilometers (rkm) long (rkm 426–332). A total of 268 eggs and 5 posthatch larvae were sampled from seven identified spawning sites between April 2 and July 7, primarily from medium gravel substrates. At these sites the mean water column velocities were 0.8 m/s at depths ranging from 0.6 to 11.3 m (6.4 ± 2.3 m, mean ± SD). We noted an average discharge of 314 m3/s and a median turbidity value of 3.9 NTU during estimated spawning events. Spawning at all sites occurred when average water temperatures were 13.5 ± 1.0°C and during water year types ranging from critically dry to wet. Green Sturgeon eggs averaged 4.11 ± 0.20 mm in diameter (n = 207), were very adhesive, and were between developmental stages 2 (just fertilized) and 44 (posthatch larva). We estimated that eggs were collected from a minimum of 54 different spawning events, based on sample date and location, egg developmental stage at capture, and water temperatures. Green Sturgeon spawning data indicates there is spatial separation from sympatric White Sturgeon A. transmontanus, but some temporal overlap exists. The thermally and hydrologically managed Sacramento River with its numerous diversions and competing water demands appears to have an approximate reach of 120 rkm in the 405‐km‐long river that is favorable for Green Sturgeon spawning in most years. Management decisions need to assess and incorporate the spawning habitat requirements of Green Sturgeon and coordinate this information with that of endangered winter‐run Chinook Salmon Oncorhynchus tshawytscha while attempting to meet the diverse demands of the limited Sacramento River water resources.

Evaluation of watershed-derived mass loads to prioritize TMDL decision-making.

A total maximum daily load (TMDL) for oxygen demanding substances is being implemented in the San Joaquin River (SJR) in California (USA) due to frequently occurring low dissolved oxygen conditions. The SJR is a eutrophic river, heavily impacted by agriculture. A mass balance was developed to identify the sources of oxygen-demanding substances and nutrients to the river with the objective of providing a scientific basis for management actions needed to meet TMDL requirements. Data were collected for flow and water quality and mass loads calculated for sites within the main stem of the SJR, river inputs (tributaries), and diversions in the study area. Using a quadrant analysis, tributary flows and loads are ranked to identify targets for water quality improvement efforts. Additionally, all mass loads were summed (inputs minus diversions) and compared with observed loads at the downstream limit of the study area. The mass balance analysis identifies major contributors of mass loads and mass balance closure is assessed for each constituent. These analysis methods inform the TMDL process which includes a load allocation, and is useful for determining locations for implementation of improvement projects needed to improve the health of the river.

Biogenic polycyclic aromatic hydrocarbons in sediments of the San Joaquin River in California (USA), and current paradigms on their formation.

Biogenic perylene and higher plant pentacyclic triterpenoid-derived alkylated and partially aromatized tetra- and pentacyclic derivatives of chrysene (3,4,7-trimethyl- and 3,3,7-trimethyl-1,2,3,4-tetrahydrochrysene, THC) and picene (1,2,9-trimethyl- and 2,2,9-trimethyl-1,2,3,4-tetrahydropicene, THP) were two- to four-fold more abundant than pyrogenic PAH in two sediment cores from the San Joaquin River in Northern California (USA). In a core from Venice Cut (VC), located in the river, PAH concentrations varied little downcore and the whole-core PAH concentration (biogenics + pyrogenics) was 250.6 ± 73.7ngg(-1) dw; biogenic PAH constituted 67 ± 4% of total PAH. THC were 26 ± 9% of total biogenic PAH, THP were 36 ± 7%, and perylene was 38 ± 7%. PAH distributions in a core from Franks Tract (FT), a former wetland that was converted to an agricultural tract in the late 1800s and flooded in 1938, were more variable. Surface sediments were dominated by pyrogenic PAH so that biogenic PAH were only ~30% of total PAH. Deeper in the core, biogenic PAH constituted 60-93% of total PAH; THC, THP and perylene were 31 ± 28%, 24 ± 32%, and 45 ± 36% of biogenic PAH. At 100-103cm depth, THP constituted 80% of biogenic PAH and at 120-123cm perylene was 95% of biogenic PAH. Current concepts related to precursors and transformation processes responsible for the diagenetic generation of perylene and triterpenoid-derived PAH are discussed. Distributions of biogenic PAH in VC and FT sediments suggest that they may not form diagenetically within these sediments but rather might be delivered pre-formed from the river's watershed.

From past patterns to future potential: using historical ecology to inform river restoration on an intermittent California river

Effective river restoration requires understanding a system’s potential to support desired functions. This can be challenging to discern in the modern landscape, where natural complexity and heterogeneity are often heavily suppressed or modified. Historical analysis is therefore a valuable tool to provide the long-term perspective on riverine patterns, processes, and ecosystem change needed to set appropriate environmental management goals and strategies. In this study, we reconstructed historical (early 1800s) riparian conditions, river corridor extent, and dry-season flow on the lower Santa Clara River in southern California, with the goal of using this enhanced understanding to inform restoration and management activities. Hundreds of cartographic, textual, and visual accounts were integrated into a GIS database of historical river characteristics. We found that the river was characterized by an extremely broad river corridor and a diverse mosaic of riparian communities that varied by reach, from extensive (>100 ha) willow-cottonwood forests to xeric scrublands. Reach-scale ecological heterogeneity was linked to local variations in dry-season water availability, which was in turn underpinned by regional geophysical controls on groundwater and surface flow. Although human actions have greatly impacted the river’s extent, baseflow hydrology, and riparian habitats, many ecological attributes persist in more limited form, in large part facilitated by these fundamental hydrogeological controls. By drawing on a heretofore untapped dataset of spatially explicit and long-term environmental data, these findings improve our understanding of the river’s historical and current conditions and allow the derivation of reach-differentiated restoration and management opportunities that take advantage of local potential.

The impact of the streamflow hydrograph on sediment supply from terrace erosion

Sediment supply from banks and terraces has important implications for grain-size distributions in alluvial rivers (and by extension for aquatic habitat), as well as for the delivery of floodplain-stored nutrients and contaminants to the aquatic environment. The interactions between streamflow hydrographs and lateral channel boundary failure control the sediment supply from banks and terraces. However, the relationships between variable flow and discrete sediment supply from catastrophic erosion of lateral boundaries and subsequent mass sediment flux in rivers are not well characterised by existing methods and models that focus only on one of several relevant interrelated processes. In order to improve predictive capability of catastrophic sediment supply from lateral boundaries, we adopt a new approach to modelling the process interactions between stream hydrology, erosion of banks/terraces, and the corresponding discrete supply of sediment to channels. We develop a modelling framework for terrace — channel coupling that combines existing theories of flow through porous media, bank stability, and fractional sediment flux. We demonstrate the utility of this modelling approach by assessing hydrologically driven erosion, evolution of grain size in the channel, and fine sediment flux from a study site along the Yuba River in California over individual flood hydrographs and over decadal historical flow series. We quantify the supply of sediment eroded from a contaminated nineteenth century fan terrace of hydraulic gold mining tailings intersecting the Yuba, and find that a threshold for erosion exists at a stage in the channel in excess of 8m producing episodic sediment concentrations in excess of ~300mgL−1. The modelling produced erosion and fine sediment pulses from each of three major floods in the past several decades until the flow drops below 500 m3 s−1 and a bed armor layer forms, while no sediment was generated from the terrace during smaller floods. We further assess the impact on terrace erosion of various river management scenarios with distinct hydrograph shapes and find increased erosion potential when the terrace contains antecedent moisture or the flood time series is run over an extended duration. Sensitivity analysis demonstrated that elevated antecedent moisture within the lateral boundary and increased hydrograph rising time each reduce bank stability and thus increase volumes of failed material. We also show that fluctuations in the hydrograph, typically associated with hydroelectricity generation, result in a more stable terrace than those of a longer duration because there is less time for hyporheic stream water to infiltrate the lateral boundary. This study demonstrates that changes in hydrograph shape as a consequence of climatic forcing or anthropogenic dam releases may have considerable impacts upon sediment delivery and associated contaminants from banks and terraces to the downstream environment.

Sources and Transport of Phosphorus to Rivers in California and Adjacent States, U.S., as Determined by SPARROW Modeling

AbstractThe SPARROW (SPAtially Referenced Regression on Watershed attributes) model was used to simulate annual phosphorus loads and concentrations in unmonitored stream reaches in California, U.S., and portions of Nevada and Oregon. The model was calibrated using de‐trended streamflow and phosphorus concentration data at 80 locations. The model explained 91% of the variability in loads and 51% of the variability in yields for a base year of 2002. Point sources, geological background, and cultivated land were significant sources. Variables used to explain delivery of phosphorus from land to water were precipitation and soil clay content. Aquatic loss of phosphorus was significant in streams of all sizes, with the greatest decay predicted in small‐ and intermediate‐sized streams. Geological sources, including volcanic rocks and shales, were the principal control on concentrations and loads in many regions. Some localized formations such as the Monterey shale of southern California are important sources of phosphorus and may contribute to elevated stream concentrations. Many of the larger point source facilities were located in downstream areas, near the ocean, and do not affect inland streams except for a few locations. Large areas of cultivated land result in phosphorus load increases, but do not necessarily increase the loads above those of geological background in some cases because of local hydrology, which limits the potential of phosphorus transport from land to streams.

Reenvisioning cross-sectional at-a-station hydraulic geometry as spatially explicit hydraulic topography

Transect-based hydraulic geometry is well established but depends on a complex set of subjective fieldwork and computational decisions that sometimes go unexplained. As a result, it is ripe for reenvisioning in the light of the emergence of meter-scale, spatially explicit data and algorithmic geospatial analysis. This study developed and evaluated a new spatially explicit method for analyzing discharge-dependent hydraulics coined ‘hydraulic topography’ that not only increases accuracy but also eliminates several sample- and assumption-based inconsistencies. Using data and hydrodynamic simulations from the regulated, gravel–cobble-bed lower Yuba River in California, power functions were fitted to discharge-dependent average width, depth, and depth-weighted velocity for three spatial scales and then their corresponding exponents and coefficients were compared across scales and against ones computed using traditional approaches. Average hydraulic values from cross sections at the segment scale spanned up to 1.5 orders of magnitude for a given discharge. Transect-determined exponents for reach-scale depth and velocity relations were consistently over- and underestimated, respectively, relative to the hydraulic topography benchmark. Overall, 73% of cross-sectional power regression parameters assessed fell between 10 and 50 absolute percent error with respect to the spatially explicit hydraulic topography baseline. Although traditional transect-based sampling may be viable for certain uses, percent errors of this magnitude could compromise engineering applications in river management and training works.

Current Status of Western Yellow-Billed Cuckoo along the Sacramento and Feather Rivers, California.

To evaluate the current status of the western population of the Yellow-billed Cuckoo (Coccyzus americanus) along the Sacramento and Feather rivers in California’s Sacramento Valley, we conducted extensive call playback surveys in 2012 and 2013. We also quantified the amount and distribution of potential habitat. Our survey transects were randomly located and spatially balanced to sample representative areas of the potential habitat. We estimated that the total area of potential habitat was 8,134 ha along the Sacramento River and 2,052 ha along the Feather River, for a total of 10,186 ha. Large-scale restoration efforts have created potential habitat along both of these rivers. Despite this increase in the amount of habitat, the number of cuckoos we detected was extremely low. There were 8 detection occasions in 2012 and 10 occasions in 2013 on the Sacramento River, in both restored and remnant habitat. We had no detections on the Feather River in either year. We compared our results to 10 historic studies from as far back as 1972 and found that the Yellow-billed Cuckoo had unprecedentedly low numbers in 2010, 2012, and 2013. The current limiting factor for the Yellow-billed Cuckoo in the Sacramento Valley is likely not the amount of appropriate vegetation, as restoration has created more habitat over the last 30 years. Reasons for the cuckoo decline on the Sacramento and Feather rivers are unclear.

High resolution synoptic salinity mapping to identify groundwater--surface water discharges in lowland rivers.

Quantifying distributed lateral groundwater contributions to surface water (GW-SW discharges) is a key aspect of tracking nonpoint-source pollution (NPSP) within a watershed. In this study, we characterized distributed GW-SW discharges and associated salt loading using elevated GW specific conductance (SC) as a tracer along a 38 km reach of the Lower Merced River in Central California. High resolution longitudinal surveys for multiple flows (1.3-150 m(3) s(-1)) revealed river SC gradients that mainly decreased with increasing flow, suggesting a dilution effect and/or reduced GW-SW discharges due to hydraulic gradient reductions. However, exceptions occurred (gradients increasing with increasing flow), pointing to complex spatiotemporal influences on GW-SW dynamics. The surveys revealed detailed variability in salinity gradients, from which we estimated distributed GW-SW discharge and salt loading using a simple mixing model. Modeled cumulative GW discharges for two surveys unaffected by ungauged SW discharges were comparable in magnitude to differential gauging-based discharge estimates and prior GW-SW studies along the same river reach. Ungauged lateral inlets and sparse GW data limited the study, and argue for enhancing monitoring efforts. Our approach provides a rapid and economical method for characterizing NPSP for gaining rivers in the context of integrated watershed modeling and management.

Explaining Spatial Patterns of Mussel Beds in a Northern California River: The Role of Flood Disturbance and Spawning Salmon

Despite considerable effort, predicting habitat preferences for freshwater mussels has remained elusive. This study identified four parameters that correlate with bed stability to decipher fine-scale spatial patterning of habitat use by the western pearl shell mussel (Margaritifera falcata) in the Trinity River of Northern California. Logistic regression analysis correctly predicted the occurrence of 83% of mussel bed areas based on water depth, velocity, substrate size, and distance to the stream bank as estimated from hydrodynamic modelling of low-flow conditions. These parameters coincide with bed stability at high flow and provide support for the ‘refugia hypothesis’. Our data clearly demonstrate that mussel beds occupied the most stable portions of the riverbed; however, habitat was partitioned with one of their primary host fish, Chinook salmon (Oncorhynchus tshawytscha), a species that also requires stable bed areas for spawning. Mussels occupied significantly deeper and lower velocity areas that were closer to the streambank compared with spawning salmon, but where habitats directly overlapped (30% of potential mussel habitat) mussels were excluded because the act of spawning disturbs the riverbed. By necessity, mussels and salmon must co-exist, but results of this study indicate that they compete for stable bed areas that may be limiting in dynamic river systems. Copyright © 2015 John Wiley & Sons, Ltd.

Juvenile Salmonid Utilization of Floodplain Rearing Habitat After Gravel Augmentation in a Regulated River

Gravel augmentation is used in sediment-starved streams to improve salmonid spawning habitat. As gravel is added to river channels, water surface elevations may rise in adjacent areas, activating floodplain habitat at lower flows, and floodplains inundate more frequently, potentially affecting the quantity and quality of juvenile salmonid rearing habitat. We analysed 5 years of juvenile Chinook salmon Oncorhynchus tschawytscha and steelhead Oncorhynchus mykiss data from snorkel surveys before and after gravel augmentation in the Lower American River, a low-gradient, highly regulated alluvial river in California's Central Valley. We measured the quality and quantity of rearing habitat (current velocity and areal extent of inundated riparian vegetation) following gravel placement and tested whether these factors affected juvenile abundance. Gravel augmentation increased floodplain extent by 3.7–19.8%, decreased average flow velocity from 1.6 to 0.3 m s−1 and increased the amount of vegetative cover from 0.3% to 22.6%. Juvenile abundances increased significantly for both species following augmentation. However, the strength of the relationship between abundance and habitat variables was greater for smaller salmonids. These results suggest that, in addition to enhancing salmonid spawning habitat, gravel augmentation can improve rearing habitat where channel incision and/or regulated hydrographs disconnect floodplains from main river channels. Copyright © 2015 John Wiley & Sons, Ltd.

Parabolic northern-hemisphere river flow teleconnections to El Niño-Southern Oscillation and the Arctic Oscillation

It is almost universally assumed in statistical hydroclimatology that relationships between large-scale climate indices and local-scale hydrometeorological responses, though possibly nonlinear, are monotonic. However, recent work suggests that northern-hemisphere atmospheric teleconnections to El Niño-Southern Oscillation (ENSO) and the Arctic Oscillation can be parabolic. The effect has recently been explicitly confirmed in hydrologic responses, though associations are complicated by land surface characteristics and processes, and investigation of water resource implications has been limited to date. Here, we apply an Akaike Information Criterion-based polynomial selection approach to investigate annual flow volume teleconnections for 42 of the northern hemisphere’s largest ocean-reaching rivers. Though we find a rich diversity of responses, parabolic relationships are formally consistent with the data for almost half the rivers, and the optimal model for eight. These highly nonlinear water supply teleconnections could radically alter the standard conceptual model of how water resources respond to climatic variability. For example, the Sacramento river in drought-ridden California exhibits no significant monotonic ENSO teleconnection but a 0.92 probability of a quadratic relationship, reducing mean predictive error by up to 65% and suggesting greater opportunity for climate index-based water supply forecasts than previously appreciated.

Statistical Modeling of Daily Water Temperature Attributes on the Sacramento River

AbstractThe Sacramento River is the largest river in California, and an important source of water for agricultural, municipal, and industrial users. Input to the Sacramento River comes from Shasta Lake and is controlled by operators of Shasta Dam, who are challenged with meeting the competing needs of these users while also maintaining a cold water habitat for Endangered Species Act (ESA) listed winter-run Chinook salmon. The cold water habitat goals are constrained by the volume of cold water storage in the lake, which operators attempt to selectively deploy throughout the critical late summer/fall window. To make informed decisions about the release of this limited cold water resource, skillful forecasts of downstream water temperature attributes at the seasonal time scale are crucial. To this end, we offer a generalized linear modeling (GLM) framework with a local polynomial method for function estimation, to provide predictions of a range of daily water temperature attributes (maximum daily water temp...

Optimizing Selective Withdrawal from Reservoirs to Manage Downstream Temperatures with Climate Warming

AbstractSelective withdrawal systems can take advantage of thermal stratification in reservoirs to manage downstream temperatures. Selective withdrawal might also help adapt operations to environmental changes, such as increased stream temperatures expected with climate change. This exploratory study develops a linear programming model to release water from different thermal pools in reservoirs to minimize deviations from target downstream temperatures. The model is applied with representative thermal dynamics to Lake Spaulding, a multipurpose reservoir on the South Fork Yuba River in California with climate warming represented by uniform increases in air temperature. Optimization results for thermal pool management with selective withdrawal are compared to a single, low-level outlet release model. Optimal selective withdrawal hedges the winter release of cold water to decrease summer stream temperatures. With climate warming, selective withdrawal can help lessen stream warming in the summer but at a cost...

Ensemble streamflow prediction adjustment for upstream water use and regulation

• Hydrologic forecasts are commonly biased in watersheds with water use/regulation. • Approach to (a) characterize flow biases/uncertainties and (b) adjust forecasts. • Demonstrations/validation in three watersheds of the American River, California. • Readily applicable to other regions. • Developed for operational use by the NWS River Forecast Centers. Hydrologic model forecasts are commonly biased in watersheds where water use and regulation activities cause flow alterations. Furthermore, direct accounting of such biases in forecast preparation is impractical as the information required is extensive and usually unavailable. This article introduces a new method to characterize the aggregate flow alteration biases and associated uncertainty in watersheds with important but largely undocumented water use and regulation activities. It also uses these assessments to adjust the ensemble streamflow predictions at downstream locations. The method includes procedures to (a) detect the presence of significant upstream regulation and water use influences; (b) correct the ensemble streamflow predictions and associated uncertainty for any biases in periods when such influences are detectable; and (c) assess the adjusted forecast reliability improvements. Applications in three watersheds of the American River in California demonstrate that the new method leads to significant forecast skill improvements and is also readily applicable to other regions.

Quantifying Process-Based Mitigation Strategies in Historical Context: Separating Multiple Cumulative Effects on River Meander Migration

Environmental legislation in the US (i.e. NEPA) requires defining baseline conditions on current rather than historical ecosystem conditions. For ecosystems with long histories of multiple environmental impacts, this baseline method can subsequently lead to a significantly altered environment; this has been termed a ‘sliding baseline’. In river systems, cumulative effects caused by flow regulation, channel revetment and riparian vegetation removal significantly impact floodplain ecosystems by altering channel dynamics and precluding subsequent ecosystem processes, such as primary succession. To quantify these impacts on floodplain development processes, we used a model of river channel meander migration to illustrate the degree to which flow regulation and riprap impact migration rates, independently and synergistically, on the Sacramento River in California, USA. From pre-dam conditions, the cumulative effect of flow regulation alone on channel migration is a reduction by 38%, and 42–44% with four proposed water diversion project scenarios. In terms of depositional area, the proposed water project would reduce channel migration 51–71 ha in 130 years without current riprap in place, and 17–25 ha with riprap. Our results illustrate the utility of a modeling approach for quantifying cumulative impacts. Model-based quantification of environmental impacts allow scientists to separate cumulative and synergistic effects to analytically define mitigation measures. Additionally, by selecting an ecosystem process that is affected by multiple impacts, it is possible to consider process-based mitigation scenarios, such as the removal of riprap, to allow meander migration and create new floodplains and allow for riparian vegetation recruitment.

Scenarios for Restoring Floodplain Ecology Given Changes to River Flows Under Climate Change: Case from the San Joaquin River, California

AbstractFreshwater ecosystem health has been increasingly linked to floodplain connectivity, and some river restoration efforts now overtly target reconnecting floodplain habitats for species recovery. The dynamic nature of floodplain habitats is not typically accounted for in efforts to plan and evaluate potential floodplain reconnection projects. This study describes a novel approach for integrating streamflow dynamics with floodplain area to quantify species‐specific habitat availability using hydraulic modelling, spatial analysis and statistical measures of flow regime. We used this hydro‐ecological modelling approach to examine the potential habitat for splittail (Pogonichthys macrolepidotus), Chinook salmon (Oncorhynchus tshawytscha) and their food resources under two restoration treatments and two climate change flow scenarios for a study site on San Joaquin River in California. Even with the addition of new floodplain through restoration efforts, the modelling results reveal only 13 streamflow events in the past 80 years had the magnitude and duration required for splittail spawning and rearing, and 14 events had flows long enough for salmon rearing benefits. Under climate change, modelled results suggest only 4–17% of the years in the rest of this century are likely to produce required flow‐related habitat conditions for splittail and salmon rearing along the study reach. Lastly, we demonstrate by simulating augmented reservoir releases that restoration of fish habitat will require a more natural flow regime to make use of restored floodplain and achieve the desired hydrologic habitat connectivity. Copyright © 2014 John Wiley & Sons, Ltd.