Red Sea Reef Research Articles

Water chemistry reveals a significant decline in coral calcification rates in the southern Red Sea

Experimental and field evidence support the assumption that global warming and ocean acidification is decreasing rates of calcification in the oceans. Local measurements of coral growth rates in reefs from various locations have suggested a decline of ~6–10% per decade since the late 1990's. Here, by measuring open water strontium-to-alkalinity ratios along the Red Sea, we show that the net contribution of hermatypic corals to the CaCO3 budget of the southern and central Red Sea declined by ~100% between 1998 and 2015 and remained low between 2015 and 2018. Measured differences in total alkalinity of the Red Sea surface water indicate a 26 ± 16% decline in total CaCO3 deposition rates along the basin. These findings suggest that coral reefs of the southern Red Sea are under severe stress and demonstrate the strength of geochemical measurements as cost-effective indicators for calcification trends on regional scales.

Pleistocene reefs of the Egyptian Red Sea: environmental change and community persistence.

The fossil record of Red Sea fringing reefs provides an opportunity to study the history of coral-reef survival and recovery in the context of extreme environmental change. The Middle Pleistocene, the Late Pleistocene, and modern reefs represent three periods of reef growth separated by glacial low stands during which conditions became difficult for symbiotic reef fauna. Coral diversity and paleoenvironments of eight Middle and Late Pleistocene fossil terraces are described and characterized here. Pleistocene reef zones closely resemble reef zones of the modern Red Sea. All but one species identified from Middle and Late Pleistocene outcrops are also found on modern Red Sea reefs despite the possible extinction of most coral over two-thirds of the Red Sea basin during glacial low stands. Refugia in the Gulf of Aqaba and southern Red Sea may have allowed for the persistence of coral communities across glaciation events. Stability of coral communities across these extreme climate events indicates that even small populations of survivors can repopulate large areas given appropriate water conditions and time.

Genetic diversity of giant clams (Tridacna spp.) and their associated Symbiodinium in the central Red Sea

The biodiversity of the Red Sea remains relatively understudied, particularly for invertebrate taxa. Documenting present patterns of biodiversity is essential for better understanding Red Sea reef ecosystems and how these ecosystems may be impacted by stressors (such as fishing and climate change). Several species of giant clams (genus Tridacna) are reported from the Red Sea, although the majority of research effort has occurred in the Gulf of Aqaba. We investigated the genetic diversity (16S rDNA) of the Tridacna species found in the central Saudi Arabian Red Sea. We also investigated the genetic diversity (ITS rDNA) of symbiotic dinoflagellates Symbiodinium associated with these clams. Samples were collected from nine reefs on a cross-shelf gradient near Thuwal, Saudi Arabia. Two species, T. squamosa and T. maxima, were recorded, with the latter being the most abundant. Tridacna squamosina, a species recently reported in the northern Red Sea, was not found, suggesting that this species is not present or is very rare in our study region. All tridacnids sampled were found to harbor Symbiodinium grouped in Clade A, considered an opportunistic, heat-tolerant symbiont group in anemones and corals. The consistent association with Clade A Symbiodinium in central Red Sea tridacnids may reflect the consequence of adaptation to the relatively extreme conditions of the Red Sea. This study contributes to an ever-growing catalog of Red Sea biodiversity and serves as important baseline information for a region experiencing dynamic pressures.

Reef fish communities in the central Red Sea show evidence of asymmetrical fishing pressure

In order to assess human impacts and develop rational restoration goals for corals reefs, baseline estimates of fish communities are required. In Saudi Arabian waters of the Red Sea, widespread unregulated fishing is thought to have been ongoing for decades, but there is little direct evidence of the impact on reef communities. To contextualize this human influence, reef-associated fish assemblages on offshore reefs in Saudi Arabia and Sudan in the central Red Sea were investigated. These reefs have comparable benthic environments, experience similar oceanographic influences, and are separated by less than 300 km, offering an ideal comparison for identifying potential anthropogenic impacts such as fishing pressure. This is the first study to assess reef fish biomass in both these regions, providing important baselines estimates. We found that biomass of top predators on offshore Sudanese reefs was on average almost three times that measured on comparable reefs in Saudi Arabia. Biomass values from some of the most remote reefs surveyed in Sudan’s far southern region even approach those previously reported in the Northwestern Hawaiian Islands, northern Line Islands, Pitcairn Islands, and other isolated Pacific islands and atolls. The findings suggest that fishing pressure has significantly altered the fish community structure of Saudi Arabian Red Sea reefs, most conspicuously in the form of top predator removal. The results point towards the urgent need for enhanced regulation and enforcement of fishing practices in Saudi Arabia, while making a strong case for protection in the form of no-take marine protected areas to maintain preservation of the relatively intact southern Sudanese Red Sea.

Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (Chaetodon austriacus): current status and its characteristics.

Butterflyfish are among the most iconic of the coral reef fishes and represent a model system to study general questions of biogeography, evolution and population genetics. We assembled and annotated the genome sequence of the blacktail butterflyfish (Chaetodon austriacus), an Arabian region endemic species that is reliant on coral reefs for food and shelter. Using available bony fish (superclass Osteichthyes) genomes as a reference, a total of 28926 high-quality protein-coding genes were predicted from 13967 assembled scaffolds. The quality and completeness of the draft genome of C.austriacus suggest that it has the potential to serve as a resource for studies on the co-evolution of reef fish adaptations to the unique Red Sea environment, as well as a comparison of gene sequences between closely related congeneric species of butterflyfish distributed more broadly across the tropical Indo-Pacific.

Ongoing decline of shark populations in the Eastern Red Sea

Information on the abundance and diversity of Red Sea elasmobranchs is notoriously scarce, even though sharks are among the most profitable fisheries of the region. Effective conservation would ideally entail baselines on pristine conditions, yet no such data is available for the Red Sea. To collect distribution and abundance data on Red Sea elasmobranchs, we conducted a dedicated longline and Baited Remote Underwater Video system (BRUVs) sampling program along the entire Red Sea coast of Saudi Arabia over the course of two years. Both survey techniques were opportunistically employed at central and southern Saudi Arabian (SA) Red Sea reef systems. In addition, BRUVs were employed in the northern SA Red Sea and at selected reef systems in Sudan. Shark catch per unit effort (CPUE) data for BRUVs and longline surveys were compared to published data from non-Red Sea reef systems. This comparison revealed CPUE estimates several orders of magnitude lower for both survey methods in the SA Red Sea compared to other reef systems around the world. Catch per unit effort values of BRUVs on Sudanese reefs on the contrary were within the range of estimates from various locations where sharks are considered common. We argue that decades of heavy fishing pressure on Red Sea marine resources has significantly altered the community structure of SA Red Sea reefs. There is an urgent need to establish effective management strategies for species of highest conservation concern. Our results have the potential to be used as a baseline, if such management strategies were to be established.

Ampharetidae (Annelida: Polychaeta) from the Red Sea reef Al Fahal (Saudi Arabia) with the description of a new species

A new species of Ampharetidae, Amphicteis fiegei sp. nov., is described from the Red Sea reef Al Fahal off Thuwal, Saudi Arabia. It is characterized by the possession of prominent nuchal ridges that are elevated from the prostomium, relatively short paleae, which are few in numbers (five on each side), and transverse rows of cilia in one of its branchial pairs. Furthermore, Samytha storchi Reuscher & Wehe in Wehe, 2009 is recorded for the first time since its original description.

Environmental controls on daytime net community calcification on a Red Sea reef flat

Coral growth and carbonate accumulation form the foundation of the coral reef ecosystem. Changes in environmental conditions due to coastal development, climate change, and ocean acidification may pose a threat to net carbonate production in the near future. Controlled laboratory studies demonstrate that calcification by corals and coralline algae is sensitive to changes in aragonite saturation state (Ωa), as well as temperature, light, and nutrition. Studies also show that the dissolution rate of carbonate substrates is impacted by changes in carbonate chemistry. The sensitivity of coral reefs to these parameters must be confirmed and quantified in the natural environment in order to predict how coral reefs will respond to local and global changes, particularly ocean acidification. We estimated the daytime hourly net community metabolic rates, both net community calcification (NCC) and net community productivity (NCP), at Sheltered Reef, an offshore platform reef in the central Red Sea. Average NCC was 8 ± 3 mmol m−2 h−1 in December 2010 and 11 ± 1 mmol m−2 h−1 in May 2011, and NCP was 21 ± 7 mmol m−2 h−1 in December 2010 and 44 ± 4 mmol m−2 h−1 in May 2011. We also monitored a suite of physical and chemical properties to help relate the rates at Sheltered Reef to published rates from other sites. While previous research shows that short-term field studies investigating the NCC–Ωa relationship have differing results due to confounding factors, it is important to continue estimating NCC in different places, seasons, and years, in order to monitor changes in NCC versus Ω in space and time, and to ultimately resolve a broader understanding of this relationship.

Distribution and Disease Prevalence of Coral Associated Bacteria at Some Impacted Red Sea Reefs

Prevalence and distribution of coral disease were surveyed in three impacted sites at Red Sea coast. Prevalence were significant difference between studied reefs (ANOVA; F = 10.777, p < 0.0001). Sites closed to oil pollution (sites 1 and 2) displayed much higher levels of disease prevalence (25.3% ± 8.3 2 and 18.5% ± 3.1, respectively), than site 3 that close to landfilling (12.9% ± 2.1). Totally, 99coral braches, representing 20 species affected by at least 12 diseases. However, site 3 is characterized by the highest diversity (Simpson’s Index = 0.081) and highest percentage cover of life coral (35.2% ± 11.4) showed the lowest coral diseases number (3). In opposite, 10 coral diseases were recorded at site 1, and 8 coral diseases at site 2. While, the coral disease atramentous necrosis attained the highest prevalence percentage at sites 1 and 2 (3.2% and 4.5%, respectively), did not recorded at site 3. Sediment damage disease recorded the highest prevalence percentage at site 3 (5.1%), but did not record at sites 1 and 2. Diseases having lowest percentage cover were white band disease (sites 1 and 2) and white tips disease. The most commonly distributed disease (atramentous necrosis) infected five corals in site 1 and six corals in site 2. The least commonly distributed disease (white tips) infected only two corals (Acropora humilis and Acropora formosa) at site 3. The genus Porites at sites was particularly vulnerable to all diseases. However, Galaxea fasicularis at site 3 recorded the highest percent cover of sediment damage disease. Coral disease atramentous necrosis is always associated with Vermetidae predation and Tridacna boring. While, Drupels predation is associated with skeletal eroding band. Aggressive filamentous algal overgrowth is associated with sediment damage disease at site 3. The pathogenic bacterium isolated from the diseased Stylophora pistillata, Porites sp., and Acropora sp., referred to as Vibrio fischeri.

Bioerosion in the Miocene Reefs of the northwest Red Sea, Egypt

Macroborings provide detailed information on the bioerosion, accretion and palaeoenvironment of both modern and fossil reefs. Dolomitized reefal carbonates in the Um Mahara Formation exhibit an outstanding example of spatially distributed, well-preserved bioerosion structures in tropical to subtropical syn-rift Miocene reefs. Ten ichnospecies belonging to five ichnogenera are identified; three belonging to the bivalve-boring ichnogenus Gastrochaenolites, three attributed to the sponge-boring ichnogenus Entobia, and four ichnospecies assigned to three worm-boring ichnogenera Trypanites, Maeandropolydora and Caulostrepsis. The distribution of the reported borings is strongly linked to the palaeo-reef zones. Two distinctive ichnological boring assemblages are recognized. The Gastrochaenolites-dominated assemblage reflects shallower-marine conditions, under water depths of a few metres, mostly in back-reef to patch-reef zones of a back-reef lagoon. The Entobia-dominated assemblage signifies relatively deeper marine conditions, mostly in reef core of the fringing Miocene reefs. These ichnological assemblages are attributed herein to the Entobia sub-ichnofacies of the Trypanites ichnofacies. This ichnofacies indicates boring in hard carbonate substrates (such as corals, rhodoliths, carbonate cements and hardgrounds) during periods of non-sedimentation or reduced sediment input.

Regional variation in the structure and function of parrotfishes on Arabian reefs

Parrotfishes (f. Labridae) are a unique and ubiquitous group of herbivorous reef fishes. We compared the distribution and ecosystem function (grazing and erosion) of parrotfishes across 75 reefs in Arabia. Our results revealed marked regional differences in the abundance, and taxonomic and functional composition of parrotfishes between the Red Sea, Arabian Sea, and Arabian Gulf. High densities and diversity of parrotfishes, and high rates of grazing (210%year−1) and erosion (1.57kgm−2year−1) characterised Red Sea reefs. Despite Arabian Sea and Red Sea reefs having broadly comparable abundances of parrotfishes, estimates of grazing (150%year−1) and erosion (0.43kgm−2year−1) were markedly lower in the Arabian Sea. Parrotfishes were extremely rare within the southern Arabian Gulf, and as such rates of grazing and erosion were negligible. This regional variation in abundance and functional composition of parrotfishes appears to be related to local environmental conditions.

Antibacterial effect of the red sea soft coral Sarcophyton trocheliophorum

The marine soft corals Sarcophyton trocheliophorum crude extracts possessed antimicrobial activity towards pathogenic bacterial strains, i.e. Bacillus cereus, Salmonella typhi, Escherichia coli, Staphylococcus aureus and Pseudomonas aeruginosa. Bioassay-guided fractionation indicated that the antimicrobial effect was due to the presence of terpenoid bioactive derivatives. Further biological assays of the n-hexane fractions were carried out using turbidity assay, inhibition zone assay and minimum inhibitory concentration for investigating the growth-inhibition effect towards the Gram-positive and Gram-negative bacteria. The fractions were screened and the structure of the isolated compound was justified by interpretation of the spectroscopic data, mainly mass spectrometry (GC-MS). The structure was assigned as (5S)-3-[(3E,5S)-5-hydroxy-3-hepten-6-yn-1-yl]-5-methyl-2(5H)-furanone and was effective at concentrations as low as 0.20 mg/mL. The above findings, in the course of our ongoing research on marine products, may implicate that the profound anti-microbial activity of the S. trocheliophorum soft corals, inhabiting the red sea reefs, is attributed to the presence of growth-inhibiting secondary metabolites mainly terpenoids.

Chemical versus structural defense against fish predation in two dominant soft coral species (Xeniidae) in the Red Sea

Soft corals of the family Xeniidae are particularly abundant in Red Sea coral reefs. Their success may be partly due to a strong defense mechanism against fish predation. To test this, we conducted field and aquarium experiments in which we assessed the antifeeding effect of secondary metabolites of 2 common xeniid species, Ovabunda crenata and Heteroxenia ghardaqensis. In the field experiment, the metabolites of both investigated species reduced feeding on experimental food pellets in the natural population of Red Sea reef fishes by 86 and 92% for O. crenata and H. ghardaqensis, respectively. In the aquarium experiment, natural concentration of crude extract reduced feeding on experimental food pellets in the common reef fish Thalassoma lunare (moon wrasse) by 83 and 85%, respectively. Moon wrasse feeding was even reduced at extract concentrations as low as 12.5% of the natural concentration in living soft coral tissues. To assess the potential of a structural anti-feeding defence, sclerites of O. crenata were extracted and mixed into food pellets at natural, doubled and reduced concentration without and in combination with crude extract at 25% of natural concentration, and tested in an aquarium experiment. The sclerites did not show any effect on the feeding behavior of the moon wrasse indicating that sclerites provide structural support rather than antifeeding defense. H. ghardaqensis lacks sclerites. We conclude that the conspicuous abundance of xeniid soft coral species in the Red Sea is likely a consequence of a strong chemical defence, rather than physical defences, against potential predators.

Zooplankton diversity across three Red Sea reefs using pyrosequencing

Coral reefs are considered among the most diverse ecosystems on Earth, yet little is known about the diversity of plankton in the surrounding water column. Moreover, few studies have utilised genomic methods to investigate zooplankton diversity in any habitat. This study investigated the diversity of taxa by sampling 45 stations around three reef systems in the central/southern Red Sea. The diversity of metazoan plankton was investigated by targeting the 18S rRNA gene and clustering OTUs at 97% sequence similarity. A total of 754 and 854 metazoan OTUs were observed in the data set for the 1380F and 1389F primer sets respectively. The phylum Arthropoda dominated both primer sets accounting for ~60% of reads followed by Cnidaria (~ 20%). Only about 20% of OTUs were shared between all three reef systems and the relation between geographic distance and Jaccard Similarity measures was not significant. Cluster analysis showed that there was no distinct split between reefs and stations from different reefs clustered together both for metazoans as a whole and for the phyla Arthropoda, Cnidaria and Chordata separately. This suggests that distance may not be a determining factor in the taxonomic composition of stations.

Distribution and zonation of Goatfishes (Family: Mullidae) inhabiting the Northern Red Sea, South Sinai, Egypt.

Goatfish species are among the most common species of the Red Sea reef communities; however, there are only few attempts to describe the distribution of them in the Red Sea. The main aim of the study is to shed light on some ecological features of the Goatfish inhabiting the Red Sea reef. Observations were conducted along the eastern coast of Sinai Peninsula, South Sinai, Red Sea, Egypt. Visual census transects were established with timed swims along the study sites which were divided into three sections: the northern sites, the middle sites, and the southern sites. Six species of goatfishes were recorded (Parupeneus cyclostomus, P. macronima, P. indicus, P. forsskali, Mulloidichthys Vanicolensis, M. flavolineatus). P. macronima had the highest abundance, while M. flavolineatus had the lowest at all sites. In general, the number of species is not influenced by the sites (p = 0.774), while the number of individuals varied significantly among sites (p = 0.065). The zones have significant effect on the abundance of species, as the number of individuals was higher in the reef slope than in the reef flat (P = 0.060), and the number of species was also higher on the reef slope than the reef flat (p = 0.071). Sizes of goatfish individuals were bigger in the reef slope than the reef flat, but not in a significant way (p = 0.182).

Effect of habitat characteristics on the distribution and abundance of damselfish within a Red Sea reef

For coral reef fish with an obligate relationship to their habitat, like Pomacentrid damselfish, choosing a suitable home amongst the reef structure is key to survival. A surprisingly small number of studies have examined patterns in adult damselfish distributions compared to other ontogenetic phases. The aim of this study was to determine which reef and coral colony characteristics explained adult damselfish distribution patterns in a Red Sea reef. The characteristics investigated were reef type (continuous or patchy), coral species (seven species of Acropora), and coral morphology (coral size and branching density). The focal damselfish species were Dascyllus aruanus, D. marginatus, Chromis viridis, and C. flavaxilla. Occupancy (presence or absence of resident damselfish), group size and fish species richness were not significantly different between the seven Acropora species. However, within each coral species, damselfish were more likely to occupy larger coral colonies than smaller coral colonies. Occupancy rates were also higher in patchy reef habitats than in continuous sections of the reef, probably because average coral colony size was greater in patchy reef type. Fish group size increased significantly with coral colony volume and with larger branch spacing. Multi-species groups of fish commonly occurred and were increasingly likely with reduced branching density and increased coral size.

In-Situ Effects of Simulated Overfishing and Eutrophication on Benthic Coral Reef Algae Growth, Succession, and Composition in the Central Red Sea

Overfishing and land-derived eutrophication are major local threats to coral reefs and may affect benthic communities, moving them from coral dominated reefs to algal dominated ones. The Central Red Sea is a highly under-investigated area, where healthy coral reefs are contending against intense coastal development. This in-situ study investigated both the independent and combined effects of manipulated inorganic nutrient enrichment (simulation of eutrophication) and herbivore exclosure (simulation of overfishing) on benthic algae development. Light-exposed and shaded terracotta tiles were positioned at an offshore patch reef close to Thuwal, Saudi Arabia and sampled over a period of 4 months. Findings revealed that nutrient enrichment alone affected neither algal dry mass nor algae-derived C or N production. In contrast, herbivore exclusion significantly increased algal dry mass up to 300-fold, and in conjunction with nutrient enrichment, this total increased to 500-fold. Though the increase in dry mass led to a 7 and 8-fold increase in organic C and N content, respectively, the algal C/N ratio (18±1) was significantly lowered in the combined treatment relative to controls (26±2). Furthermore, exclusion of herbivores significantly increased the relative abundance of filamentous algae on the light-exposed tiles and reduced crustose coralline algae and non-coralline red crusts on the shaded tiles. The combination of the herbivore exclusion and nutrient enrichment treatments pronounced these effects. The results of our study suggest that herbivore reduction, particularly when coupled with nutrient enrichment, favors non-calcifying, filamentous algae growth with high biomass production, which thoroughly outcompetes the encrusting (calcifying) algae that dominates in undisturbed conditions. These results suggest that the healthy reefs of the Central Red Sea may experience rapid shifts in benthic community composition with ensuing effects for biogeochemical cycles if anthropogenic impacts, particularly overfishing, are not controlled.

Karyological and RAPD-PCR analysis of five marine fishes species ( Labridae-Perciformes ) From Red Sea coral reef

Cytogenetic studies on five Red Sea reef fish species Larabicus quadrilineatus, Hemigymnus melapterus,Thalassoma rueppellii, Thlassoma lunare and Gomphosus caeruleus of the family Labridae (Perciformes)were carried out; all samples were collected from Hurghada, on the Egyptian Red Sea coast. All thespecimens showed a diploid chromosome number of 2n=48, they were also identical in the karyotype (allacrocentric), and in the Fundamental number FN=48. The RAPD-PCR analysis were carried out by usingeight primers OPA12, 5`-TCGGCGATAG-3, OPA14,5`-TCTGTGCTGG-3`, OPA15, 5`-TTCCGAACCC-3`, OPA17,5`- GACCGCTTGT – 3`, OPA18 5`-AGGTGACCGT-3`, OPA19 5`-CAAACGTCGG-3`,OPA20,5`-GTTGCGATCC-3` and OPO11,5`- GACAGGAGGT- 3`.The results were extremely useful to improve the importance of using RAPD-PCR in genetic analysisamong the species which are identical in chromosome number and karyotype.

In-situ Effects of Eutrophication and Overfishing on Physiology and Bacterial Diversity of the Red Sea Coral Acropora hemprichii

Coral reefs of the Central Red Sea display a high degree of endemism, and are increasingly threatened by anthropogenic effects due to intense local coastal development measures. Overfishing and eutrophication are among the most significant local pressures on these reefs, but there is no information available about their potential effects on the associated microbial community. Therefore, we compared holobiont physiology and 16S-based bacterial communities of tissue and mucus of the hard coral Acropora hemprichii after 1 and 16 weeks of in-situ inorganic nutrient enrichment (via fertilizer diffusion) and/or herbivore exclusion (via caging) in an offshore reef of the Central Red Sea. Simulated eutrophication and/or overfishing treatments did not affect coral physiology with respect to coral respiration rates, chlorophyll a content, zooxanthellae abundance, or δ 15N isotopic signatures. The bacterial community of A. hemprichii was rich and uneven, and diversity increased over time in all treatments. While distinct bacterial species were identified as a consequence of eutrophication, overfishing, or both, two bacterial species that could be classified to the genus Endozoicomonas were consistently abundant and constituted two thirds of bacteria in the coral. Several nitrogen-fixing and denitrifying bacteria were found in the coral specimens that were exposed to experimentally increased nutrients. However, no particular bacterial species was consistently associated with the coral under a given treatment and the single effects of manipulated eutrophication and overfishing could not predict the combined effect. Our data underlines the importance of conducting field studies in a holobiont framework, taking both, physiological and molecular measures into account.

The abundance of herbivorous fish on an inshore Red Sea reef following a mass coral bleaching event

A healthy herbivore community is critical for the ability of a reef to resist and recover from severe disturbances and to regain lost coral cover (i.e., resilience). The densities of the two major herbivorous fish groups (the family Acanthuridae and scarine labrids) were comparatively studied for an inshore reef that was severely impacted by a mass coral bleaching event in 2010 and an unaffected reef within the same region. Densities were found to be significantly higher on the affected reef, most likely due to the high algal densities on that reef. However, densities of herbivores on both reefs were found to be on average about 1–2 orders of magnitude lower than previously published reports from some Pacific reefs and from Red Sea reefs in the Gulf of Aqaba and only slightly higher than Caribbean reefs. Thus, it is predicted that recovery for this reef and similarly affected reefs may be very slow. The protection of herbivores from overfishing and the introduction of other management strategies that maximize reef resilience in Saudi Arabian waters are highly recommended.