In this paper, for the time-dependent parabolic equations defined on complex geometries domain, we develop and analyze the least-squares radial basis function finite difference method (RBF-FD) coupled with the implicit-explicit Runge-Kutta (IMEX-RK) time discretization up to third order accuracy, which improves stability and accuracy. We derive the absolute stability region and the optimal time-step constraint for four kinds of IMEX-RK schemes. Compared to the traditional explicit or implicit time discretization, these are not trivial. Under a wide time-step constraint, the stability and the error estimates in l2-norm are established. Finally, several numerical experiments on the regular domain and non-convex domain are performed to validate the theoretical analysis.