Zeolites, being acidic, act as the most promising catalytic materials for deoxygenating reactive oxygenated compounds produced during the pyrolysis of lignocellulosic biomass. Herein, two zeolites, HY and HZSM-5, with different Si/Al ratios, were employed to investigate the effect of zeolite structure on aromatic hydrocarbons (AHs) production during flash hydropyrolysis of cotton stalks (Temperature = 800 ˚C, H2 pressure = 10 bar). Both the zeolites enhanced AHs production. However, the pore structure and pore size of HZSM-5 marked a pronounced effect on the reduction of oxygenated compounds. With an increase in Si/Al ratio, AHs area% was found to decrease owing to the decrease in acidity. Ni/zeolite catalysts were also investigated to look into the effect of metal loading on the catalytic properties of zeolites. Ni/zeolite catalysts enhanced the aromatic and aliphatic hydrocarbon production by further conversion of phenolics and other oxygenated compounds due to the promotion of direct deoxygenation, decarbonylation and decarboxylation reactions.