This study demonstrates a simple and novel preparation method to prepare ceramic nanofiltration membranes with a precise and tunable molecular weight cut-off (MWCO) by packing variously sized nanoparticles into existing membrane pores. As a result, ceramic membranes with a MWCO from 1000 Da to 10,000 Da were successfully prepared with the narrow distribution of the pore size after the filtration-coating process. In addition, the effective porosity of the ceramic membranes was calculated from the results of the membrane properties by the Hagen-Poiseuille equation which fit within the range of the sphere packing theory from 17.3% to 41.8%. Furthermore, the results of nonlinear curve fitting between the MWCO and the nanoparticle size show a high accuracy, which implies that the MWCO of the ceramic membranes can be predicted using the curve fitting model with variously sized nanoparticles in the filtration-coating process. In conclusion, the novel filtration-coating method enables precise pore control and provides a tunable MWCO to ceramic membranes by preparing various sizes of nanoparticles.