The hydration process of blended mortars and its resistance to seawater degradation in the presence of calcined coal-series kaolin (CCK) was investigated in this study. The TG tests were used to quantify the effect of calcination temperature on the chemical-bound water content of the blended pastes while the XRD tests were applied to analyze the main crystalline hydration phases of the blended pastes, which were further quantified using the Rietveld-XRD refinement. In addition, microcalorimetric tests were used to characterize the degree of hydration. The hydration process of the blended mortars was further investigated in detail via combining SEM and pozzolanic activity tests. Based on this, the resistance to seawater degradation of the blended mortars with added CCK were verified via the expansion and strength loss tests, and the mechanism was analyzed via the electric flux and the total Cl− content tests. The optimal percentage of CCK (12%) was determined via a linear weighted sum method. The CCK obtained at 800 °C had the highest pozzolanic activity, promoting hydration reactions to form new gels (C-S-H, C-A-H and C-A-S-H) at active nucleation sites in mortars. These further enhanced both the flexural and compressive strengths (the compressive strength reached ∼53.7 MPa) of the blended mortars. However, CCK reduced the generation of Mg(OH)2, AFt and Friedel’s salt, decreasing seawater degradation to the mortars. Therefore, this study provides a new strategy to prepare high-strength mortar with high resistance to seawater degradation.