Special microstructure can significantly improve the microwave absorption property of rare materials. In this paper, porous WC powders were successfully synthesized by spray granulation method. Then, WO3@WC materials with core-shell porous structure can be prepared after 410 °C heating treatment at different time to form the outer WO3 oxidation layer. In addition, the microstructure, morphology, phase analysis and electromagnetic property were fully studied by investigating the WC-based materials in different structures. For WO3@WC core-shell porous materials, when the coating thickness was 2.1 mm, the maximum reflection loss can reach −19.4 dB at 12.6 GHz, which shows quite good microwave absorbing effects. The core-shell porous structure enhances the original microwave absorption performance due to the multiple reflection reflections and polarizations.