Polycyclic Systems Research Articles

Recent explorations of palladium-catalyzed regioselective aromatic extension processes

Polycyclic aromatic systems are important in synthetic chemistry, material science, and pharmaceutical industry. Therefore, extensive efforts have been made by the aromatic extension for the efficient access to diverse polycyclic aromatic systems. This review focuses on recent developments of palladium-catalyzed regioselective synthetic strategies with pre- and in situ-formed biaryl fragments, which enable the aromatic extension of readily available precursors into extended (hetero)aromatic systems in a rapid and facile manner.

Functional and Structural Insights into a Novel Promiscuous Ketoreductase of the Lugdunomycin Biosynthetic Pathway.

Angucyclines are a structurally diverse class of actinobacterial natural products defined by their varied polycyclic ring systems, which display a wide range of biological activities. We recently discovered lugdunomycin (1), a highly rearranged polyketide antibiotic derived from the angucycline backbone that is synthesized via several yet unexplained enzymatic reactions. Here, we show via in vivo, in vitro, and structural analysis that the promiscuous reductase LugOII catalyzes both a C6 and an unprecedented C1 ketoreduction. This then sets the stage for the subsequent C-ring cleavage that is key to the rearranged scaffolds of 1. The 1.1 Å structures of LugOII in complex with either ligand 8-O-Methylrabelomycin (4) or 8-O-Methyltetrangomycin (5) and of apoenzyme were resolved, which revealed a canonical Rossman fold and a remarkable conformational change during substrate capture and release. Mutational analysis uncovered key residues for substrate access, position, and catalysis as well as specific determinants that control its dual functionality. The insights obtained in this work hold promise for the discovery and engineering of other promiscuous reductases that may be harnessed for the generation of novel biocatalysts for chemoenzymatic applications.

Multiple Catalytic C-H Bond Functionalization for Natural Product Synthesis.

In the past decade, multiple catalytic C-H bond functionalization has been successfully applied in natural product synthesis as a strategy to reduce the number of steps, increase overall yield and employ more easily available starting materials. This minireview presents selected examples making use of multiple C-H bond functionalization in conceptually different ways. First, linear syntheses are discussed, wherein multiple C-H functionalization is employed either from simple (hetero)cyclic cores, at a late stage, or to build polycyclic systems. Second, the use of multiple C-H functionalization as a strategic tool in convergent synthesis to access and couple complex fragments is discussed. Information on the scalability of the employed methods is provided when available. The presented cases indicate that multiple C-H functionalization strategies should play a great role to shape the future synthesis of functional complex molecules with improved sustainability.

Penicimeroterpenoids A–C, Meroterpenoids with Rearrangement Skeletons from the Marine-Derived Fungus Penicillium sp. SCSIO 41512

Three novel andrastin-type meroterpenoids, penicimeroterpenoids A-C (1-3), possessing two unprecedented skeletons consisting of fused 6/5/6/6/7 and 6/5/6/6/4 polycyclic systems, were obtained from the marine-derived fungus Penicillium sp. SCSIO 41512. Their structures were determined by spectroscopic methods, and the absolute configurations were further determined by single-crystal X-ray diffraction analysis for 1 and quantum chemical calculations of ECD spectra for 2 and 3, respectively. A plausible biosynthetic pathway for 1-3 was proposed.

New cage-fused polyaza polycyclic systems based on thioglycolurils and alkanediamines

New aspects of multicomponent condensation reactions of ethylene/propylenediamine, formaldehyde and unsubstituted and 1-methyl substituted semithio- and dithioglycolurils have been examined. Ethylene-linked 2,3a,4a,6,9,10a,11aheptaaza-6,9-methanobenzo[cd]cyclonona[gh]pentalene and 2,6:10,14-dimethano-2,6,7a,8a,10,14,15a,16a-octaazadicyclodeca[cd,gh]pentalene as well as their simpler analogues were synthesized, and their structures were proved by 1D and 2D NMR spectroscopy, HRMS and X-ray analysis.

Pd-Catalyzed Domino Reactions Involving Alkenes To Access Substituted Indole Derivatives

Palladium-catalyzed domino reactions are advanced tools in achieving various nitrogen-containing heterocycles in an efficient and economical manner due to the reduced number of steps in the process. This review highlights recent advances in domino processes aimed at the synthesis of indole derivatives and polycyclic systems containing the indole nucleus in intra/intra- or intra/intermolecular reactions. In particular, we consider domino processes that involve a double bond in a step of the sequence, which allow the issue of regioselectivity in the cyclization to be faced and overcome. The different sections in this review focus on the synthesis of the indole nucleus and functionalization of the scaffold starting from different substrates that have been identified as activated starting materials, which involve a halogenated moiety or unactivated unsaturated systems. In the former case, the reaction is under Pd(0) catalysis, and in the second case a Pd(II) catalytic species is required and then an oxidant is necessary to reconvert the Pd(0) into the active Pd(II) species. On the other hand, the second method has the advantage that it uses easy available and inexpensive substrates.1 Introduction2 Indole Scaffold Synthesis2.1 Activated Substrates2.2 Unactivated Substrates3 Functionalization of Indole Scaffold3.1 Activated Substrates3.2 Unactivated Substrates4 Conclusions

A regioselective synthesis of 7-methyl juglone and its derivatives

7-Methyl juglone as a naturally occurring naphthoquinone showed striking antibacterial, antifungal, antivirus and anticancer activity. Its derivatives had also been characterized as key intermediates in the preparation of natural naphthoquinones and anthraquinones. Herein, we reported a regioselective synthesis of 7-methyl juglone via the construction of fused polycyclic systems. The key steps of the strategy involved Stobbe condensation of 2,5-dimethoxy benzaldehyde with diethyl succinate, intramolecular cyclization, reduction, acid-facilitated debenzylation and further cerium(IV) ammonium nitrate-mediated oxidation. Compared with the reported methods employing Birch conditions in liquid ammonia or Friedel-Crafts cycloacylation with melting heat of aluminum salts, the reaction conditions in the new synthetic route were milder and suitable for large scale preparations. In addition, all of the starting materials in the synthesis were readily available. It has great implications for the design and synthesis of structurally asymmetric naphthoquinones derivatives.

Identification of rapid access to polycyclic systems via a base-catalyzed cascade cyclization reaction and their biological evaluation.

A base-mediated cascade reaction between malonate esters and acrolein was developed to access complex polycyclic systems. This novel tandem reaction enables the simultaneous generation of up to seven new bonds and at least three new stereogenic centers. Mechanistic studies indicate a series of nucleophilic 1,4 and 1,6 Michael addition reactions occur, followed by an aldol condensation reaction, culminating in the formation of three fused rings. The compounds were characterized by NMR studies and the stereochemistry was confirmed by X-ray analysis. The ability to generate multigram quantities of such complex molecular scaffolds renders the method promising for medicinal chemistry campaigns. Herein, we also demonstrate that the lead compounds display promising anti-proliferative activities against human cancer cell models.

The α,α-Dihalocarbonyl Building Blocks: An Avenue for New Reaction Development in Organic Synthesis.

The α,α-dihalocarbonyl moiety is a bifunctional system with a gem-dihalocarbon and a carbonyl carbon in 1,2-fashion. This is one of the privileged scaffolds in medicinal chemistry due to its chemical and metabolic stability and lipophilicity. They have also been found in numerous structurally divergent natural products and most of their fabricated structures have already been in medicinal use. Apart from their important use in medicinal chemistry, the α,α-dihalocarbonyl groups have been employed as key building blocks for the development of novel synthetic strategies and utilized as intermediates in total synthesis. In addition to the traditional transformations such as oxidations, reductions, and C-C bond formations, recently several new and non-classical reactions have also been developed. This review provides short description of existing methods for their synthesis and detailed discussion on the efforts for the discovery and development of new reactions by employing α,α-dihaloketones as synthetic building blocks. We have presented their use as key functional groups for the synthesis of polycyclic systems of medicinal and material importance and natural products.

New pyridone alkaloids from marine-derived fungus Penicillium sp.

Five new pyridone alkaloids Citridones H-L (1–5) along with one new natural product ent-Citridone A (6) were isolated from the marine-derived fungus Penicillium sp. XZD3-3, which came from the gut of a marine shrimp. The structures and absolute configurations of these compounds were elucidated on the basis of NMR, HRESIMS, UV, modified Mosher′s method, single-crystal X-ray diffraction, and ECD calculation. Compounds 1 and 3 contained unprecedented polycyclic systems of phenyl-pyranopyridone and phenyl-spiro[cyclopentene-furopyridone], respectively. Compound 2 showed moderate inhibition activity against nitric oxide production with IC50 value of 52.5 μM. All tested compounds were inactive in neither antibacterial nor cytotoxicity assays.

Construction of Various Bridged Polycyclic Skeletons by Palladium‐Catalyzed Dearomatization

AbstractA powerful palladium‐catalyzed dearomative cyclization was developed that provides facile access to eight types of bridged tetracyclic skeletons bearing various ring sizes and heterocycles. With this method, several skeletons or analogues of natural products, including tubingensin B and dracaenones, were synthesized. Asymmetric dearomative cyclization enables the construction of various enantiomerically enriched bridged polycyclic systems with up to 99 % ee by employing a chiral palladium catalyst.

Construction of Various Bridged Polycyclic Skeletons by Palladium-Catalyzed Dearomatization.

A powerful palladium-catalyzed dearomative cyclization was developed that provides facile access to eight types of bridged tetracyclic skeletons bearing various ring sizes and heterocycles. With this method, several skeletons or analogues of natural products, including tubingensin B and dracaenones, were synthesized. Asymmetric dearomative cyclization enables the construction of various enantiomerically enriched bridged polycyclic systems with up to 99 % ee by employing a chiral palladium catalyst.

Cyclopentene Assembly by Microwave-Assisted Domino Reaction of Donor–Acceptor Cyclopropanes with Ketals

A Lewis acid-mediated domino reaction of acetals derived from aromatic ketones with 2-(het)arylcyclopropane-1,1-diesters has been developed. The reaction provides a convenient approach to cyclopentenes and related polycyclic ring systems.

Dissociative nature of C(sp2)-N(sp3) bonds of carbazole based materials via conical intersection: simple method to predict the exciton stability of host materials for blue OLEDs: a computational study.

In this work, the origin of the singlet and triplet exciton-induced degradation of host materials with C(sp2)-N(sp3) bonds around nitrogen (carbazoles, acridines, etc.), connecting donor and acceptor units, was unravelled using DFT and CASSCF methods. The results reveal that molecules (employed in OLEDs) with basic units containing C(sp2)-N(sp3) bonds (nitrogen connected to carbon in a triangular fashion) have a natural tendency to fragment at the C-N bond through an S1/S0 conical intersection (CI). The calculation of barrier heights, to reach a dissociation point, indicates that degradation via triplet states is kinetically less feasible (ΔGT1-TS* > 25 kcal mol-1) compared to that via the first singlet excited state (ΔGS1-TS* ∼7-30 kcal mol-1). However, the long lifetime of triplets (as compared to singlets) aids in the reverse intersystem crossing from triplet to singlet state for subsequent degradation. From the results and inference, ΔGS1-TS* and ΔES1-T1 are proposed to be the controlling factors for exciton-induced degradation of host materials with C(sp2)-N(sp3) bonds. Furthermore, multiple functionalization of carbazole moieties reveals that polycyclic aromatic systems employed as acceptor units of host materials are best suited for PhOLEDs as they will increase their lifetime due to the larger ΔGS1-TS* and ΔES1-T1. For TADF-based devices, materials with fused ring systems (with N(sp3) at the centre) in the donor unit are the most recommended ones based on the findings of this work, as they avoid the dissociative channel altogether. A negative linear correlation between ΔGS1-TS* and HOMO-LUMO gap is observed, which provides an indirect way to predict the kinetic stability of these materials in excitonic states. These initial results are promising for the future development of the QSAR-type approach for the smart design of host materials for long-life blue OLEDs.

Enantiomeric pairs of meroterpenoids from Rhododendron fastigiatum

Five pairs of optically pure meroterpenoid enantiomers (1a/1b-5a/5b) and two known compounds (6 and 7) were isolated from Rhododendron fastigiatum. Compounds 1a/1b-5a/5b were resolved from naturally scalemic mixtures by chiral HPLC. Their structures were elucidated by spectroscopic methods, X-ray crystallographic experiments, and ECD analyses. Compounds 1a/1b, 2a/2b, 3b, 4a/4b, and 5a/5b were new meroterpenoids with different polycyclic systems. Two enantiomeric pairs (2a/2b and 3a/3b), 6, and 7 exhibited inhibitory effects on protein tyrosine phosphatase 1B (PTP1B) in vitro.

Molecule–Metal Bond of Alternant versus Nonalternant Aromatic Systems on Coinage Metal Surfaces: Naphthalene versus Azulene on Ag(111) and Cu(111)

Interfaces between polycyclic π-electron systems and metals play prominent roles in organic or graphene-based (opto)electronic devices, in which performance-related parameters depend critically on the properties of metal/semiconductor contacts. Here, we explore how the topology of the π-electron system influences the bonding and the electronic properties of the interface. We use azulene as a model for nonalternant pentagon–heptagon (5–7) ring pairs and compare it to its isomer naphthalene, which represents the alternant 6–6 ring pair. Their coverage-dependent interaction with Ag(111) and Cu(111) surfaces was studied with the normal-incidence X-ray standing wave (NIXSW) technique, near-edge X-ray absorption fine structure (NEXAFS) spectroscopy, UV and X-ray photoelectron spectroscopies (UPS and XPS), and density functional theory (DFT). Coverage-dependent adsorption heights and spectroscopic data reveal that azulene forms shorter interfacial bonds than naphthalene and engages in stronger electronic interactions with both surfaces. These differences are more pronounced on Cu. Increasing coverages lead to larger adsorption heights, indicating bond weakening by intermolecular repulsion. The extensive DFT calculations include dispersive interactions using (1) the DFT-D3 scheme, (2) the vdWsurf correction based on DFT-TS, (3) a many-body dispersion (MBD) correction scheme, and (4) the D3surf scheme. All methods predict the adsorption heights reasonably well with an average error below 0.1 A. The stronger bond of azulene is attributed to its nonalternant topology, which results in a reduced highest occupied molecular orbital (HOMO)–lowest occupied molecular orbital (LUMO) gap and brings the LUMO energetically close to the Fermi energy of the metal, causing stronger hybridization with electronic states of the metal surfaces.

Reactivity and stereoselectivity of oxazolopyridines with a ring‐junction nitrogen atom

AbstractThe present study demonstrates a synopsis of the scientific researches reported on the different reactions of oxazolo[3,2‐a]pyridines, besides the preparation of significant fused heterocycles up till now. The different main sections that described the reactivity of the inspected analogues include stereoselective alkylation, reactions involved oxazolidine ring, synthesis of polycyclic systems, indole alkaloids, and alkyl amines. The stereochemical selectivity of oxazolopiperidone lactams is studied, in which the configuration of the stereocenter C8a and substituents at the C8 and C8a effect on the stereoselectivity. On the other hand, the synthetic consequence of the alkylation products provides diverse routes for the synthesis of substituted enantiopure piperidines that are used for the synthesis of natural products, for example, (−)‐rhazinilam, (+)‐eburnamonine, (+)‐aspidospermidine, indole alkaloids such as dihydrocleavamine, nor‐20‐epiuleine, (+)‐dasycarpidone, (+)‐uleine, indoloquinolizidine, (+)‐dihydrocorynantheine, (−)‐dihydrocorynantheol, and indolizines, eg, octahydroindolizines, monomorine I, (−)‐S‐coniceine, and (−)‐R‐coniceine.

SYNTHESIS AND UTILITY OF NEW POLYCYCLIC COMPOUNDS AS POTENTIAL ANTIMICROBIALS BASED ON CHROMENE MOIETY

Objective: The present research aims to synthesize some new polycyclic compounds including chromene moiety and study their antimicrobial activity.
 Methods: Several new polycyclic systems including chromene scaffold incorporated with pyridine, pyrimidine, imidazopyrimidine, and imidazodiazocine were achieved via condensation reaction of chromene derivative under the proper condition with various reagents namely; cyanothioacetamide, phenyl isothiocyanate, malononitrile, carbon disulfide, benzaldehyde, triethylorthoformate, and 1,4-dichlorobutane. Moreover, a chlorodiazenyl chromene derivative was reacted with some substances possessing active–CH2-bridge such as ethyl cyanoacetate and malononitrile to end up with hydrazono compounds. Such compounds were eventually cyclized with hydrazine hydrate to form pyrazole and oxopyrazole derivatives. Moreover, compound 1 was treated with benzoyl acetone, and then followed by cyclization with malononitrile to provide the corresponding 2-amino14-(4-methoxyphenyl)-4-methy-5-phenyl-14H-benzo[5,6] chromeno[2,3H][1,6]naphthyridine-3-carbonitrile (20).
 Results: The results of the antimicrobial screening in vitro revealed that the inhibition zone (mm) of the synthesized compounds 1-3, 5 and 8 implied their optimum antibacterial activity, while the compounds 4, 6 and 9-13, 15 showed a moderate to weak antibacterial activity against multiple species of B. subtilis, S. aureus, E. coli and P. aeruginosa. In contrast, the compounds 1, 6, 11, 15 showed high antifungal activities against different species of A. flavinand C. albicans, while the other compounds exhibit a moderate to poor antifungal activity.
 Conclusion: It is remarkable that a series of chromene derivatives synthesized by a simple and available method leads to a molecule of promising antimicrobial activity. Further research is recommended to approve the importance of polycyclic systems for various applications.

Global Aromaticity in Macrocyclic Polyradicaloids: Hückel's Rule or Baird's Rule?

Aromaticity is one of the most important concepts in organic chemistry to understand the electronic properties of cyclic π-conjugated molecules. Over a century, different aromaticity rules have been developed and validated. For planar monocyclic conjugated polyenes (also known as [n]annulenes), they will be aromatic if they contain [4N + 2] π electrons according to Hückel's rule, or antiaromatic if they have [4N] π electrons. Topological change from a planar to a half-twisted Möbius strip will lead to [4N] ([4N + 2]) aromaticity (antiaromaticity), which is just inverse to Hückel's rule. When the molecules are excited into the first triplet excited state, the Hückel (anti)aromaticity observed in the ground state will become reversed according to Baird's rule. Strictly speaking, these basic rules are only applicable for monocyclic conjugated systems, but some polycyclic systems such as porphyrinoids may also follow these rules if there is a dominant [n]annulene-like conjugation pathway. On the other hand, all-benzenoid polycyclic aromatic hydrocarbons usually display local aromaticity with π electrons predominantly localized at certain benzene rings according to Clar's aromatic sextet rule. In recent years, some proaromatic and antiaromatic molecules with even number of paired electrons have been found to exhibit open-shell diradical character and unique optical, electronic, and magnetic activities. One of the major driving forces is their intrinsic tendency to become aromatic in the open-shell diradical/polyradical forms. A number of stable diradicaloids and linear polyradicaloids have been successfully synthesized by using thermodynamic and kinetic stabilizing strategies. Herein, our particular interest is a type of macrocyclic polyradicaloid in which multiple frontier π-electrons are antiferromagnetically coupled with each other in a cyclic mode. Formally, these free electrons may behave like normal π-electrons in the [n]annulenes, and thus, it raises questions about their possible global aromaticity and which rule they will follow. In the past 5 years, our group has synthesized a series of macrocyclic polyradicaloids and systematically investigated their global aromaticity and electronic properties. Some important findings include: (1) global (anti)aromaticity is generally observed, but there is a balance between local aromaticity and global aromaticity; (2) most of these molecules follow Hückel's rule in the singlet state and display respective (anti)aromatic characteristics; (3) in some special cases, both Hückel's rule and Baird's rule can be applicable, and a unique annulene-within-an-annulene super-ring structure was demonstrated for the first time; (4) global antiaromaticity in the transition state is also important and a slow valence tautomerization process was observed in a supercyclobutadiene tetraradicaloid. These studies demonstrate how these open-shell macrocyclic polyradicaloids adapt their geometry and spin state to reach the lowest-energy state (aromatic). In this Account, we will mainly discuss their synthesis, global aromaticity, and the fundamental structure-radical character-aromaticity-properties relationships. Various experimental methods (e.g., NMR, X-ray crystallographic analysis, and electronic absorption spectroscopy) and theoretical calculations (e.g., anisotropy of the induced current density, nucleus independent chemical shift, and isochemical shielding surface) have been used to elaborate their (anti)aromatic character. At the end, a perspective on the possible three-dimensional global aromaticity in fully conjugated cagelike diradicaloids or polyradicaloids will be also discussed.

Effect of Conformation on Electron Localization and Delocalization in Infinite Helical Chains [X(CH3)2]∞ (X = Si, Ge, Sn, and Pb).

An intuitive explanation of the effects of conformation (backbone dihedral angle) on electron delocalization in infinite saturated regular helices [(CH3)2]∞Si, [(CH3)2Ge]∞, [(CH3)2Sn]∞, and [(CH3)2Pb]∞ is offered in terms of the simple Ladder C model and confirmed by density functional theory calculations. The effective hole mass, which ranges from near zero to infinity as a function of conformation, is used as a measure of the degree of delocalization and relates to the effects of chain length extension in finite systems. The position of the Fermi level in reciprocal space has a simple counterpart in systems of finite length and is used to characterize the dominant mechanism, σ conjugation (geminal interactions) or σ hyperconjugation (vicinal interactions, through-bond coupling). Constructive or destructive interference of the two mechanisms produces three different delocalization regimes as a function of the backbone dihedral angle and analogy is drawn to polycyclic π-electron systems consisting of fused Hückel or Möbius four-membered rings.