Atom-probe tomography has successfully mapped three-dimensional (3D) dopant atom distributions in nanoscale volumes of Si subjected to various processing procedures. The 3D evolution of dopants, specifically effects such as dopant clustering and grain-boundary segregation, were analyzed in implanted polycrystalline Si gate contacts and implanted shallow junctions. A cluster of dimensions 2×7×8nm3 and containing 264 B atoms, was identified at the intersection of three poly-Si grains, verifying that annealing highly overdoped thin poly-Si layers does not facilitate uniformly doped and highly conductive gate contact layers.