Synchrophasor data from real world power systems are exposed to numerous adverse cyber-and-physical operating conditions that can negatively impact their fitness for use in PMU applications. Although the most significant impairments such as GPS loss, instrument transformer failure, data drop-off, etc., have been studied in the literature, there exist other more complex nuisances that impact PMU data quality. This is the case of differences in how clock synchronization, time disciplining, and phasor estimation is performed by different PMU vendors, which have important implications on the PMUs’ data fitness for use in PMU applications. In particular, ambient data applications, which have increasingly become a focus for tracking grid performance indicators, are extremely sensitive to periodic clock errors. Using synchrophasor and waveform data from Dominion Energy’s power system, this article provides an in-depth analysis of the effect of seemingly minor device clock errors on the measurement signals’ content. Finally, a method to distinguish clock errors from normal system dynamics and to correct them is proposed.