Profound global transformations in the Anthropocene epoch are hastening shifts in species ranges, with natural mountain treeline migration playing a crucial role in this overarching species movement. The varied reactions of mountain treelines to climatic conditions across diverse climatic zones, when compounded by local disturbances, result in distinct migration patterns. Usually, warming encourages mountain treelines to migrate to higher elevations. Nevertheless, in a period of rapid warming, it remains unclear whether the natural mountain treeline in global thermal climatic zones and subclimatic zones has expedited its upward movement. Here, we employed remote sensing observations and the random forest algorithm to investigate the natural treeline dynamics across 24 major mountain ranges worldwide amidst a period of rapid warming (1990–2020). Our research shows substantial disparities in the migration patterns of natural mountain treelines across the global thermal zone. The natural mountain treeline in tropical and subtropical zones descends by an average of 1.1 and 0.8 m per year, respectively. Only 18.8 and 35.5% of the natural mountain treelines in these regions had undergone upward migration, respectively. The average migration rates of natural mountain treelines in temperate and boreal zones were 0.7 m per year. Correspondingly, 47 and 33.2% of the natural mountain treelines in these zones had already shifted to higher elevations. The highest average migration rate of natural mountain treelines occurs in temperate continental climates (1.7 m per year). The loss or degradation of alpine species habitats, a direct consequence of the upward movement of the treeline, highlights the necessity for increased monitoring and protection of alpine species in temperate and boreal zones in the future.