Present study examines the impact of the quality of the GDL non-wetting coating on water transport. It is found that there are two distinct regions defined by the coating quality which present fundamentally distinct behaviours, one region characterized by few coating defects with the second marked by significant coating degradation. Simulations consider the influence of heterogeneous wetting and pinning conditions on protruding water droplets in contact with the GDL fibrous matrix. The impact is assessed by examining the breakthrough pressure as a function of protruding droplet volumes. When a non-wetting coating such as PTFE is applied, inherent coating defects determine a mixed-non-wetting (MNW) behaviour of water passing through the pores of the GDL. The MNW behaviour for a quasi-uniform non-wetting coating having less than 25% defects is characterized by a high breakthrough pressure, yielding improved transport properties in the stable displacement regime. The MNW meniscus is critical to establishing a high breakthrough pressure and a small characteristic droplet volume, parameters considered to be important in the design of a GDL that promotes optimal water transport. The coating degrades under normal operating conditions and as a consequence it changes the water transport characteristics of the porous medium. In this range where coating defects are predominant it is found that the water breakthrough pressure changes significantly, rendering poor performance below that of a non-coated wetting GDL. Various degrees of coating degradation are considered and the corresponding Laplace pressure is determined as a function of breakthrough droplet volumes.