Non-targeted High-resolution Mass Spectrometry Research Articles

Improving Exposure Assessment Using Non-Targeted and Suspect Screening: The ISO/IEC 17025: 2017 Quality Standard as a Guideline

The recent advances of novel methodologies such as non-targeted and suspect screening based on high-resolution mass spectrometry (HRMS) have paved the way to a new paradigm for exposure assessment. These methodologies allow to profile simultaneously thousands of small unknown molecules present in environmental and biological samples, and therefore hold great promises in order to identify more efficiently hazardous contaminants potentially associated with increased risks of developing adverse health outcomes. In order to further explore the potential of these methodologies and push the transition from research applications towards regulatory purposes, robust harmonized quality standards have to be implemented. Here, we discuss the feasibility of using ISO/IEC 17025: 2017 as a guideline to implement non-targeted and suspect screening methodologies in laboratories, whether it is for accreditation purposes or not. More specifically, we identified and then discussed how specificities of non-targeted HRMS methodology can be accounted for in order to comply with the specific items of ISO/IEC 17025: 2017. We also discussed other specificities of HRMS methodologies (e.g., need for digital storage capacity) that are so far not included in the ISO/IEC 17025 requirements but should be considered. This works aims to fuel and expand the discussion in order to subsidize new opportunities of harmonization for non-targeted and suspect screening.

Developments in mycotoxin analysis: an update for 2019-2020

This review summarises developments on the analysis of various matrices for mycotoxins published in the period from mid-2019 to mid-2020. Notable developments in all aspects of mycotoxin analysis, from sampling and quality assurance/quality control of analytical results, to the various detection and quantitation technologies ranging from single mycotoxin biosensors to comprehensive instrumental methods are presented and discussed. Aside from sampling and quality control, discussion of this past year’s developments is organised by detection and quantitation technology and covers chromatography with targeted or non-targeted high resolution mass spectrometry, tandem mass spectrometry, detection other than mass spectrometry, biosensors, as well as assays that use alternatives to antibodies. This critical review aims to briefly present the most important recent developments and trends in mycotoxin determination as well as to address limitations of the presented methodologies.

A Non-Targeted High-Resolution Mass Spectrometry Study for Extra Virgin Olive Oil Adulteration with Soft Refined Oils: Preliminary Findings from Two Different Laboratories.

This work presents a non-targeted high-resolution mass spectrometry inter-laboratory study for the detection of new chemical markers responsible of soft refined oils addition to extra virgin olive oils. Refined oils (soft deodorized and soft deacidified) were prepared on a laboratory scale starting from low-quality olive oils and analyzed together with a set of pure extra virgin olive oil (EVOO) samples and with mixtures of adulterated and pure EVOO at different percentages. The same analytical workflow was applied in two different laboratories equipped with two types of instrumentation (Q-Orbitrap and Q-TOF); a group of discriminant molecules was selected, and a tentative identification of compounds was also proposed. In summary, 12 molecules were identified as markers of this specific adulteration, and seven of them were selected as discriminative in both the laboratories, with a similar trend throughout the samples (i.e., propylene glycol 1 stearate). The results obtained in the two laboratories are comparable, concretely demonstrating the inter-laboratory repeatability of non-targeted studies. As a confirmation, the same markers were detected also in “in-house” mixtures and in suspect commercial deodorized mixtures, reinforcing the robustness of the results obtained and proving that, thanks to these molecules, mixtures containing at least 40% of adulterated oils can be detected.

A non-targeted high-resolution mass spectrometry approach for the assessment of the geographical origin of durum wheat

The assessment of durum wheat geographical origin is an important and emerging challenge, due to the added value that a claim of origin could provide to the raw material itself, and subsequently to the final products (i.e. pasta).Up to now, the typical approach presented in literature is the evaluation of different isotopic ratios of the elements, but other techniques could represent an interesting and even more powerful alternative.In this study, using a non-targeted high‐resolution mass spectrometry approach, a selection of chemical markers related to the geographical origin of durum wheat was provided. Samples of the 2016 wheat campaign were used to set up the model and to select the markers, while samples from the 2018 campaign were used for model and markers validation.Including in the samples set different geographies across different continents, a discrimination through Italian, European and Not European samples is now possible.

Performance of the organic-diffusive gradients in thin-films passive sampler for measurement of target and suspect wastewater contaminants

Although passive sampling is widely accepted as an excellent tool for environmental monitoring, their integration with suspect or non-targeted screening by high-resolution mass spectrometry has been limited. This study describes the application of the organic-diffusive gradients in thin-films (o-DGT) passive sampler as a tool for accurate measurement of both targeted and suspect polar organic contaminants (primarily pharmaceuticals) in wastewater. First, performance of o-DGT was assessed alongside the polar organic chemical integrative sampler (POCIS) and active sampling at two wastewater treatment facilities using targeted analyses. Overall, water concentrations measured by o-DGT, POCIS, and 24-hr integrative active samples were in good agreement with each other. There were exceptions, including a systematic difference between o-DGT and POCIS at certain sites that we propose was a result of site-specific conditions and a difference in sampling rates between the two techniques. The second component of this work involved suspect screening of the o-DGT extracts using high-resolution, high mass accuracy quadrupole time-of-flight mass spectrometry (QTOF). Lamotrigine, venlafaxine, and des-methylvenlafaxine were three suspect compounds identified and selected as proof-of-concept case studies to determine the feasibility and accuracy of o-DGT for estimating water concentrations based upon predicted sampling rates using a previously validated o-DGT diffusion model. Semi-quantification of the suspect compounds was conducting using an average surrogate response factor based on the suite of compounds measured by the targeted analyses. This, combined with the modelled sampling rates provided time-weighted average wastewater concentrations of the identified suspects within a factor of 2 of the true value, confirmed by isotope dilution with mass labelled internal surrogates. To the knowledge of the authors, this work is the first to demonstrate the utility of the o-DGT passive sampler as a potential environmental screening tool that can be integrated into the rapidly advancing field of non-targeted high resolution mass spectrometry.

Botanical and commercial characterisation of gum arabic and its detection in wine using non-targeted high resolution mass spectrometry

Gum arabic (GA) is the oldest and best known of all natural gums. Thanks to the particular characteristics resulting from its complex mixture of polysaccharides and glycoproteins, its field of application is extensive. In the oenological sector, it is used to prevent colour depigmentation and protein precipitation and although there is no declared limit, the International Code of Oenological Practices suggests not exceeding a dosage of 300 mg L−1.In this study, the botanical origin (Acacia senegal vs A. seyal) and commercial description (Kordofan region vs other Sub-Saharan areas, based on the traditional geographic provenance) were defined studying 44 GA samples with a non-targeted screening approach using high resolution mass spectrometry. From an initial group of 88 identified masses, 15 were selected to create a bi-factor PLS-DA statistical model able to correctly reclassify samples with 94.4% accuracy. Moreover, the study addressed the question of identifying gum addition in wines, analysing 98 untreated wines and comparing them with 40 wines to which gum arabic had been added (200 mg L−1). Considering the database of 88 masses, 4 of them were established to be markers of gum arabic addition (m/z 152.1067, 166.1225, 585.1428 and 643.1403). Principal component analysis performed with the signal (area) of the 4 masses highlighted three groupings differentiating untreated wines, wines treated with A. senegal gum and wines treated with A. seyal gum. m/z 152.1067 was tentatively identified as N-methyltyramine, while m/z 166.1225 as N,O-dimethyltyramine.

HaloSeeker 1.0: A User-Friendly Software to Highlight Halogenated Chemicals in Nontargeted High-Resolution Mass Spectrometry Data Sets.

In the present work, we address the issue of nontargeted screening of organohalogenated chemicals in complex matrixes. A global strategy aiming to seek halogenated signatures in full-scan high-resolution mass spectrometry (HRMS) fingerprints was developed. The resulting all-in-one user-friendly application, HaloSeeker 1.0, was developed to promote the accessibility of associated in-house bioinformatics tools to a large audience. The ergonomic web user interface avoids any interactions with the coding component while allowing interactions with the data, including peak detection (features), deconvolution, and comprehensive accompanying manual review for chemical formula assignment. HaloSeeker 1.0 was successfully applied to a marine sediment HRMS data set acquired on a liquid chromatography-heated electrospray ionization [LC-HESI(-)] Orbitrap instrument ( R = 140 000 at m/z 200). Among the 4532 detected features, 827 were paired and filtered in 165 polyhalogenated clusters. HaloSeeker was also compared to three similar tools and showed the best performances. HaloSeeker's ability to filter and investigate halogenated signals was demonstrated and illustrated by a potential homologue series with C12H xBr yCl zO2 as a putative general formula.

\u201cMS-Ready\u201d structures for non-targeted high-resolution mass spectrometry screening studies

Chemical database searching has become a fixture in many non-targeted identification workflows based on high-resolution mass spectrometry (HRMS). However, the form of a chemical structure observed in HRMS does not always match the form stored in a database (e.g., the neutral form versus a salt; one component of a mixture rather than the mixture form used in a consumer product). Linking the form of a structure observed via HRMS to its related form(s) within a database will enable the return of all relevant variants of a structure, as well as the related metadata, in a single query. A Konstanz Information Miner (KNIME) workflow has been developed to produce structural representations observed using HRMS (“MS-Ready structures”) and links them to those stored in a database. These MS-Ready structures, and associated mappings to the full chemical representations, are surfaced via the US EPA’s Chemistry Dashboard (https://comptox.epa.gov/dashboard/). This article describes the workflow for the generation and linking of ~ 700,000 MS-Ready structures (derived from ~ 760,000 original structures) as well as download, search and export capabilities to serve structure identification using HRMS. The importance of this form of structural representation for HRMS is demonstrated with several examples, including integration with the in silico fragmentation software application MetFrag. The structures, search, download and export functionality are all available through the CompTox Chemistry Dashboard, while the MetFrag implementation can be viewed at https://msbi.ipb-halle.de/MetFragBeta/.

Metabolomic Profiles of Dinophysis acuminata and Dinophysis acuta Using Non-Targeted High-Resolution Mass Spectrometry: Effect of Nutritional Status and Prey.

Photosynthetic species of the genus Dinophysis are obligate mixotrophs with temporary plastids (kleptoplastids) that are acquired from the ciliate Mesodinium rubrum, which feeds on cryptophytes of the Teleaulax-Plagioselmis-Geminigera clade. A metabolomic study of the three-species food chain Dinophysis-Mesodinium-Teleaulax was carried out using mass spectrometric analysis of extracts of batch-cultured cells of each level of that food chain. The main goal was to compare the metabolomic expression of Galician strains of Dinophysis acuminata and D. acuta that were subjected to different feeding regimes (well-fed and prey-limited) and feeding on two Mesodinium (Spanish and Danish) strains. Both Dinophysis species were able to grow while feeding on both Mesodinium strains, although differences in growth rates were observed. Toxin and metabolomic profiles of the two Dinophysis species were significantly different, and also varied between different feeding regimes and different prey organisms. Furthermore, significantly different metabolomes were expressed by a strain of D. acuminata that was feeding on different strains of the ciliate Mesodinium rubrum. Both species-specific metabolites and those common to D. acuminata and D. acuta were tentatively identified by screening of METLIN and Marine Natural Products Dictionary databases. This first metabolomic study applied to Dinophysis acuminata and D.acuta in culture establishes a basis for the chemical inventory of these species.

A non-targeted high-resolution mass spectrometry data analysis of dissolved organic matter in wastewater treatment

The dissolved organic matter (DOM) in wastewater is typically described by a limited number of concentration measurements of select DOM fractions or micro-contaminants, which determine the removal efficiency in a wastewater treatment. Current methods do not necessarily reflect the true performance of the treatment with regard to environmental and public health risk. Herein we describe the development and application of a non-targeted liquid chromatography-high resolution mass spectrometry (LC-HRMS) data analysis for the evaluation of wastewater treatment processes. Our data analysis approach was applied to a real wastewater system with secondary biological treatment and tertiary treatment consisting of sand filtration, UV-treatment, and chlorination. We identified significant changes in DOM during wastewater treatment. The secondary treatment removed 1617 of 2409 (67%) detected molecular features (grouped isotopologues belonging to the same molecule) from the influent while 255 of 1047 (24%) new molecular features appeared in the secondary effluent. A reduction in the number of large molecules (>450 Da) and an increase in unsaturated molecular features of the effluent organic matter was observed. Van Krevelen plots revealed the distribution of unsaturation and heteroatoms and Kendrick mass defect plots uncovered CH2 homologous series implying a removal of heavy constituents in that fraction. The demonstrated approach is a step towards a more comprehensive monitoring of DOM in wastewater and contributes to the understanding of current treatment technologies.

Extraction and cleansing of data for a non-targeted analysis of high-resolution mass spectrometry data of wastewater

We provide a workflow to extract unidentified signals from chromatography-high resolution mass spectrometry (LC-HRMS) data of wastewater samples as a pre-step of a non-targeted analysis of dissolved organic matter (DOM). We provide detailed methodology on data processing and cleanup using MS processing software MZmine 2 and an own set of functions in R developed for wastewater analysis. The processing involves signal extraction, linear mass correction, reduction of noise, grouping of isotopologues, molecular formula assignment and merging of replicates. The article contains software settings and reasoning behind the choice of data extraction options. The supplementary information contains a script for the correction of signal masses using internal standards and templates of internal standard lists. We included a reproducible example as an R notebook with data cleansing workflow and data exported from MZmine. The data were used according to the described methodology in the article “A non-targeted high-resolution mass spectrometry data analysis of dissolved organic matter in wastewater treatment” by Verkh et al., 2018.•Includes a linear mass correction algorithm for LC-HRMS signals.•Describes a pipeline of non-targeted processing of LC-HRMS data of wastewater using free software.•Provides tests and reasons for parameter choice in non-targeted LC-HRMS wastewater data extraction.

Assessment of tandem mass spectrometry and high-resolution mass spectrometry for the analysis of bupivacaine in plasma.

Triple quadrupole mass spectrometers coupled with high performance liquid chromatography are workhorses in quantitative bioanalyses. They provide substantial benefits including reproducibility, sensitivity and selectivity for trace analysis. Selected reaction monitoring allows targeted assay development but datasets generated contain very limited information. Data mining and analysis of nontargeted high-resolution mass spectrometry profiles of biological samples offer the opportunity to perform more exhaustive assessments, including quantitative and qualitative analysis. The objectives of this study were to test method precision and accuracy, to statistically compare bupivacaine drug concentration in real study samples and to verify if high-resolution and accurate mass data collected in scan mode can actually permit retrospective data analysis, more specifically, extract metabolite related information. The precision and accuracy data presented using both instruments provided equivalent results. Overall, the accuracy ranged from 106.2 to 113.2% and the precision observed was from 1.0 to 3.7%. Statistical comparisons using a linear regression between both methods revealed a coefficient of determination (R(2)) of 0.9996 and a slope of 1.02, demonstrating a very strong correlation between the two methods. Individual sample comparison showed differences from -4.5 to 1.6%, well within the accepted analytical error. Moreover, post-acquisition extracted ion chromatograms at m/z 233.1648 ± 5 ppm (M - 56) and m/z 305.2224 ± 5 ppm (M + 16) revealed the presence of desbutyl-bupivacaine and three distinct hydroxylated bupivacaine metabolites. Post-acquisition analysis allowed us to produce semi-quantitative evaluations of the concentration-time profiles for bupicavaine metabolites.