In this research, hydrophilic molecularly imprinted microspheres (HMIPs) for azoxystrobin were successfully synthesized through precipitation polymerization. The adsorption capacities of HMIPs for azoxystrobin in water medium were higher than ordinary molecularly imprinted microspheres (MIPs), and HMIPs exhibited good hydrophilic properties. HMIPs and non-imprinted microspheres (HNIPs) were characterized by FT-IR, SEM, laser particle size analyzer and TGA. Comparing with HNIPs, azoxystrobin had a significant influence on morphologys and sizes of HMIPs. The Langmuir adsorption isotherm illustrated each binding site of HMIPs had the same adsorption capacity. The Lagergran pseudo-second-order kinetic model indicated the adsorption process between azoxystrobin and HMIPs was chemical adsorption. BET test illustrated HMIPs had bigger specific surface areas than HNIPs. Selective adsorption indicated that HMIPs had highly specific recognition of azoxystrobin. HMIPs successfully exhibited high selectivity and high hydrophilicity in water medium.