This research presents results of the estimation of temporal variability of the hydroacoustic noise probability density function (PDF) in shallow waters within the frequency band of 0.03–3.3 kHz; the studies were conducted near the Primorsky Aquarium on Russky Island, Vladivostok, Russia. Signals were received via unidirectional hydrophone and automatic gain control of the received signals. The hydrophone was attached to a drifting buoy via an elastic suspension; the received signals were transmitted by cable to a boat drifting with the buoy. The results of the comparison of the sea noise probability density function (PDF) estimates at the output of a system with automatic gain control (AGC) with similar results for a white Gaussian noise in the same frequency band are described.