ContextRiparian areas are considered to undergo major alterations under changing climate, making floodplain habitats targets for conservation and landscape planning. Protected areas might provide sanctuaries especially for sessile riparian plant species, but these niches are not always persistent over time.ObjectivesWe investigate if plant species of floodplain forests are provided with suitable habitat within currently protected areas and if these refugia persist. A coupled-modelling approach is used to gain spatially explicit information on new areas for sanctuaries.MethodsWe use species distribution models to predict the niche of 12 Salicion albae and 7 Fraxinion floodplain forest species along rivers in Switzerland, under current, moderate and extreme climate change scenarios up to 80 years to the future (2100). The spread of plant species from current habitat to suitable future habitat is simulated using dispersal vectors and life history traits.ResultsSalicion albae species are more flexible under both climate change scenarios than Fraxinion species. The main limitation for the spread of species is their dispersal ability, as only a minority of the suitable cells is colonized during the simulation process. The predicted future presence within currently protected areas decreases under both climate change scenarios in the model.ConclusionsCurrent protected floodplains do not provide persistent refugia for the plants studied, but might still be of importance to other organisms. Planning of sanctuaries for riparian plant species and communities need to focus on connectivity along rivers to maintain viable source populations in dynamic riverine landscapes under changing climate.