The primary objective of modal identification for variable thickness quartz plates is to ascertain their dominant operating mode, which is essential for examining the vibration of beveled quartz resonators. These beveled resonators are plate structures with varying thicknesses. While the beveling process mitigates some spurious modes, it still presents challenges for modal identification. In this work, we introduce a modal identification technique based on the energy method. When a plate with variable thickness is in a resonant state of thickness–shear vibration, the proportions of strain energy and kinetic energy associated with the thickness–shear mode in the total energy reach their peak values. Near this frequency, their proportions are the highest, aiding in identifying the dominant mode. Our research was based on the Mindlin plate theory, and appropriate modal truncation were conducted by retaining three modes for the coupled vibration analysis. The governing equation of the coupled vibration was solved for eigenvalue problem, and the modal energy proportions were calculated based on the determined modal displacement and frequency. Finally, we computed the eigenvalue problems at different beveling time, as well as the modal energies associated with each mode. By calculating the energy proportions, we could clearly identify the dominant mode at each frequency. Our proposed method can effectively assist engineers in identifying vibration modes, facilitating the design and optimization of variable thickness quartz resonators for sensing applications.