Interstitial Migration Research Articles

First Principles Simulations on Migration Paths of Oxygen Interstitials in MgAl2O4

Thermal stability of the primary electronic defects – F‐type centers – in oxide materials is controlled by their recombination with much more mobile complementary defects – interstitial oxygen ions Oi. Thus, the study of interstitial ion migration is of key importance for the prediction of radiation damage in oxides. In this study, several possible migration trajectories for neutral and charged interstitial oxygen ions are calculated in MgAl2O4spinel using the first principles calculations of atomic and electronic structure. The lowest energy barriers are ≈1.0–1.1 eV and 0.8 eV, respectively. The effective atomic charges, charge redistribution, and lengths of bonds closest to Oiinterstitials are analyzed in detail.

Halogen Migration in Hybrid Perovskites: The Organic Cation Matters.

In hybrid perovskite materials, the organic cations are one of the key structural components used to tune the electronic and optical properties of this promising class of materials. Here, we studied the strong impact of organic cations, methylammonium (MA) and formamidinium (FA), on halogen vacancy and interstitial migration, as well as surface degradation in cubic-phase MAPbBr3 and FAPbBr3 crystals using density functional theory calculations. We found Br vacancies and interstitials have much lower formation energies and higher density in MAPbBr3 in comparison to FAPbBr3 crystals. Moreover, the transition energy barrier for Br migration through vacancies within the bulk phase is lower in MAPbBr3 than in FAPbBr3. We also found that FAPbBr3 has a much higher rotation barrier of the organic cation than MAPbBr3, which points to a much stronger H-bonding with Br in the former case. Our results show that incorporating organic cations with the appropriate structure, shape, and strong H-bonding capabilities in hybrid perovskite crystals is very beneficial for suppressing ion migration and thus further improving the performance of hybrid perovskite-based devices.

How relative defect migration energies drive contrasting temperature-dependent microstructural evolution in irradiated ceramics

Ceramic materials have become widely used in various fields of material science, and ceramic oxides such as cubic zirconia (c-${\mathrm{ZrO}}_{2})$ and magnesia (MgO) are candidate materials for nuclear energy applications. For the corresponding in-service conditions of these materials, there is a crucial need in studies at moderate or high temperatures of the physical phenomena underlying the damage buildup under irradiation. In the present work, we show, using x-ray diffraction, that these two materials exhibit a similar damage accumulation process under ion irradiation at fixed temperature. However, they display an unexpected opposite damaging rate to changes in the irradiation temperature. In fact, as the temperature is increased, the final damage state is reached earlier in c-${\mathrm{ZrO}}_{2}$ while it is delayed in MgO. Rate equation cluster dynamics simulations show that defect clustering is favored over defect recombination in c-${\mathrm{ZrO}}_{2}$, but the situation is reversed for MgO, explaining the observed opposite response to temperature of the two materials. This contrasting behavior can be rationalized in terms of nonequivalent interstitial versus vacancy defect migration energies in MgO. We finally demonstrate that these results allow for a qualitative prediction of the evolution of the experimental irradiation-induced disorder with temperature, henceforth potentially reducing the cost in selecting and developing ad hoc materials.

Comparison of the F-type center thermal annealing in heavy-ion and neutron irradiated Al2O3 single crystals

Abstract The optical absorption and thermally stimulated luminescence of Al2O3 (sapphire) single crystals irradiated with swift heavy ions (SHI) 238U with energy 2.4 GeV is studied with the focus on the thermal annealing of the F-type centers in a wide temperature range of 400–1500 K. Its theoretical analysis allows us to obtain activation energies and pre-exponentials of the interstitial oxygen ion migration, which recombine with both types of immobile electron centers (F and F+ centers). A comparison of these kinetics parameters with literature data for a neutron-irradiated sapphire shows their similarity and thus supports the use of SHI-irradiation for modeling the neutron irradiation.

In vivo imaging reveals unique neutrophil transendothelial migration patterns in inflamed intestines.

Neutrophil (PMN) infiltration of the intestinal mucosa is a hallmark of gastrointestinal inflammation, with significant implications for host defense, injury and repair. However, phenotypic and mechanistic aspects of PMN recruitment in inflamed intestines have not been explored in vivo. Using novel epithelial/PMN fluorescence reporter mice, advanced intravital imaging and 3D reconstruction analysis, we mapped the microvasculature architecture across the intestinal layers and determined that in response to Sa/mone//a/endotoxin-induced inflammation, PMN transendothelial migration (TEM) was restricted to submucosal vessels. PMN TEM was not observed in villus or crypt vessels, proximal to the epithelium that underlies the intestinal lumen, and was partially dependent on (C-X-C motif) ligands 1 (CXCL1) and 2 (CXCL2) expression, which was found to be elevated in the submucosa layer. Restricted PMN extravasation at the submucosa and subsequent PMN interstitial migration may serve as a novel regulatory step of PMN effector function and recruitment to the luminal space in inflamed intestines.

Interstitial migration behavior and defect evolution in ion irradiated pure nickel and Ni-xFe binary alloys

Transition from long-range one-dimensional to short-range three-dimensional migration modes of interstitial defect clusters greatly reduces the damage accumulation in single-phase concentrated solid solution alloys under ion irradiation. A synergetic investigation with experimental, computational and modeling approaches revealed that both the resistance to void swelling and the delay in dislocation evolution in Ni-Fe alloys increased with iron concentration. This was attributed to the gradually increased sluggishness of defect migration, which enhances interstitial and vacancy recombination. Transition from long-range one-dimensional defect motion in pure nickel to short-range three-dimensional motion in concentrated Ni-Fe alloys is continuum, not abrupt, and within an iron concentration range up to 20%. The gradual transition process can be quantitatively characterized by the mean free path of the interstitial defect clusters.

Single-Phase Concentrated Solid-Solution Alloys: Bridging Intrinsic Transport Properties and Irradiation Resistance

Single-phase concentrated solid-solution alloys (SP-CSAs), including high entropy alloys, are compositionally complex but structurally simple, and provide a playground of tailoring material properties through modifying their compositional complexity. The recent progress in understanding the compositional effects on the energy and mass transport properties in a series of face-centered-cubic SP-CSAs is the focus of this review. Relatively low electronic and thermal conductivities, as well as small separations between the interstitial and vacancy migration barriers have been generally observed, but largely depend on the alloying constituents. We further discuss the impact of such intrinsic transport properties on their irradiation response; the linkage to the delayed damage accumulation, slow defect aggregation, and suppressed radiation induced swelling and segregation has been presented. We emphasize that the number of alloying elements may not be a critical factor on both transport properties and the defect behaviors under ion irradiations. The recent findings have stimulated novel concepts in the design of new radiation-tolerant materials, but further studies are demanded to enable predictive models that can quantitatively bridge the transport properties to the radiation damage.

Myosin 1f is specifically required for neutrophil migration in 3D environments during acute inflammation

AbstractNeutrophil extravasation and interstitial migration are important steps during the recruitment of neutrophils to sites of inflammation. In the present study, we addressed the functional importance of the unconventional class I myosin 1f (Myo1f) for neutrophil trafficking during acute inflammation. In contrast to leukocyte rolling and adhesion, the genetic absence of Myo1f severely compromised neutrophil extravasation into the inflamed mouse cremaster tissue when compared with Myo1f+/+ mice as studied by intravital microscopy. Similar results were obtained in experimental models of acute peritonitis and acute lung injury. In contrast to 2-dimensional migration, which occurred independently of Myo1f, Myo1f was indispensable for neutrophil migration in 3-dimensional (3D) environments, that is, transmigration and migration in collagen networks as it regulated squeezing and dynamic deformation of the neutrophil nucleus during migration through physical barriers. Thus, we provide evidence for an important role of Myo1f in neutrophil trafficking during inflammation by specifically regulating neutrophil extravasation and migration in 3D environments.

Hydrophobic Patterning-Based 3D Microfluidic Cell Culture Assay.

Engineering physiologically relevant in vitro models of human organs remains a fundamental challenge. Despite significant strides made within the field, many promising organ-on-a-chip models fall short in recapitulating cellular interactions with neighboring cell types, surrounding extracellular matrix (ECM), and exposure to soluble cues due, in part, to the formation of artificial structures that obstruct >50% of the surface area of the ECM. Here, a 3D cell culture platform based upon hydrophobic patterning of hydrogels that is capable of precisely generating a 3D ECM within a microfluidic channel with an interaction area >95% is reported. In this study, for demonstrative purposes, type I collagen (COL1), Matrigel (MAT), COL1/MAT mixture, hyaluronic acid, and cell-laden MAT are formed in the device. Three potential applications are demonstrated, including creating a 3D endothelium model, studying the interstitial migration of cancer cells, and analyzing stem cell differentiation in a 3D environment. The hydrophobic patterned-based 3D cell culture device provides the ease-of-fabrication and flexibility necessary for broad potential applications in organ-on-a-chip platforms.

Maximizing Ionic Mobility By Lattice Disorder in Anti-Perovskite Solid Electrolytes

Amongst these requirements for Li-ion batteries, ensuring safe operation is near the top of the list. Liquid electrolytes, widely used in commercial Li-ion batteries, have safety issues due to their volatility and flammability. Also, they may suffer from dendrite formation which can yield an internal short-circuit. In principle, solid electrolytes avoid these problems and furthermore open the possibility of using a metallic Li anode that highly increases the energy density. Recently, the anti-perovskites Li3OCl was suggested as one of promising solid electrolytes due to its high ionic conductivity.1 The correlation between high ionic conductivity and disorder has been discussed previously. Here, disorder can refer to an amorphous phase,2 disorder in the occupation of a sub-lattice,3 or in the rotational degrees of freedom of complex anions.4 The anti-perovskite system presents an ideal venue to further explore the connection between ionic mobility and disorder, in terms of the tolerance factor5 that describes the degree of disorder. The disorder can systematically be introduced by substitutions of chalcogen and halogen ions. Then, the system will lose the perfect cubic symmetry in the forms of octahedral tilting and distortion.5 In this study, anti-perovskite solid electrolytes M3XY (M = Li or Na, X = O, S, or Se and Y = F, Cl, Br or I) are thoroughly examined to compare barrier energies of pathways and investigate the correlation between lattice disorder and high ionic mobility. The density functional theory (DFT) was used to predict atomic structures and minimum energy pathways. The lattice deviates from perfect cubic symmetry as octahedral disorder is induced by substitutions of anions, and the degree of disorder increases with higher variation of tolerance factor. We calculated barrier energies of all possible individual migration paths for vacancies and interstitial ions, and found minimum energy pathway that can contribute to the macroscopic ionic transport. We reveal a clear correlation between high ionic conductivity and the lattice disorder. Compounds with higher disorder exhibits lower barriers for the migration of vacancies and interstitials, thus the disorder plays a key role in reducing the huddle for ionic migration. Therefore, it suggests that tuning lattice structure in terms of disorder can maximize the ionic conductivity. Perfect cubic symmetry presents only one unique ionic migration path along twelve octahedron edges, whereas the disorder causes environmental differences between paths due to the broken symmetry. It leads to the segregation of individual paths into energetically favorable and unfavorable channels for ionic migration. Compounds with higher degree of disorder show wider segregation and lower barriers of favorable paths. Therefore, higher disorder provides the possibility to create migration pathways by combining individual paths with low barriers and achieve high ionic conductivity.

Effect of alloying elements on defect evolution in Ni-20X binary alloys

The effect of alloying elements on radiation-induced microstructural evolution in Ni and Ni-20X (X = Fe, Cr, Mn and Pd) binary alloys was investigated using ion irradiation and cross-sectional transmission electron microscopy. The three-dimensional migration mode is identified to be the dominating migration mechanism for interstitial clusters in these binary alloys, contrary to the one-dimensional mode that dominates in the well-studied dilute alloys. The results reveal that: (1) the average size of defect clusters decreases as the solute atomic volume size factor increases. Smaller void size in Ni-20Cr is attributed to faster vacancy mobility in the near surface region, and weaker vacancy binding energy beyond the irradiation peak than Ni-20Fe. The smaller voids observed in Ni-20Mn and Ni-20Pd beyond the damage peak are due to the stronger Mn/Pd-vacancy binding effect of largely oversized solute atoms. (2) Oversized solutes can act as strong trapping sites for interstitials. The larger the solute atomic volume factor, the stronger the trapping force. This leads to a more significantly sluggish interstitial migration and smaller dislocation loop size. The average dislocation loop size in Ni-20Fe was four times larger than Ni-20Pd (atomic volume factor being 10.6% and 41.3%) but an order of magnitude lower in density. The smaller dislocation loop size in Ni-20Cr is attributed to stronger interstitial binding of Cr-Ni. Overall, the alloying effect on defects is more significant in concentrated binary alloys than in dilute binary alloys, due to the concentration difference of alloying atoms and the interstitial dominant migration mechanisms in the main irradiated region.

Vacancy assisted He-interstitial clustering and their elemental interaction at fcc-bcc semicoherent metallic interface

Cu-Nb layered nanocomposite system can be considered as a prototype system to investigate stability of the fcc-bcc semicoherent metallic interfaces. Theoretical simulations based on density functional theory have been performed in order to investigate the stability of different defects in such interfaces. The calculations find the interfacial misfit dislocation intersections as the preferred site for defects including a vacancy, He-interstitial, and a vacancy-He complex in good agreement with previous works. Our results suggest that the presence of a metallic vacancy may act as a sink for defect and favour the migration of He interstitials leading to their aggregation at the interface. The potential capability of the vacancy to accommodate He atoms was also predicted with a higher affinity towards Nb. This aggregation of He atoms is driven by local density of electron and strain in a region in the neighbourhood of Nb. Finally, we propose a plausible picture of defect energetics in the vicinity of the interface based on the Voronoi volume and Bader’s charge analysis. This analysis may replace the conventional methods used for surface energetics mapping which are extremely tedious for such large systems.

Maturation State and Matrix Microstructure Regulate Interstitial Cell Migration in Dense Connective Tissues

Few regenerative approaches exist for the treatment of injuries to adult dense connective tissues. Compared to fetal tissues, adult connective tissues are hypocellular and show limited healing after injury. We hypothesized that robust repair can occur in fetal tissues with an immature extracellular matrix (ECM) that is conducive to cell migration, and that this process fails in adults due to the biophysical barriers imposed by the mature ECM. Using the knee meniscus as a platform, we evaluated the evolving micromechanics and microstructure of fetal and adult tissues, and interrogated the interstitial migratory capacity of adult meniscal cells through fetal and adult tissue microenvironments with or without partial enzymatic digestion. To integrate our findings, a computational model was implemented to determine how changing biophysical parameters impact cell migration through these dense networks. Our results show that the micromechanics and microstructure of the adult meniscus ECM sterically hinder cell mobility, and that modulation of these ECM attributes via an exogenous matrix-degrading enzyme permits migration through this otherwise impenetrable network. By addressing the inherent limitations to repair imposed by the mature ECM, these studies may define new clinical strategies to promote repair of damaged dense connective tissues in adults.

Visualization of T Cell-Regulated Monocyte Clusters Mediating Keratinocyte Death in Acquired Cutaneous Immunity

It remains unclear how monocytes are mobilized to amplify inflammatory reactions in T cell-mediated adaptive immunity. Here, we investigate dynamic cellular events in the cascade of inflammatory responses through intravital imaging of a multicolor-labeled murine contact hypersensitivity model. We found that monocytes formed clusters around hair follicles in the contact hypersensitivity model. In this process, effector T cells encountered dendritic cells under regions of monocyte clusters and secreted IFN-γ, which mobilizes CCR2-dependent monocyte interstitial migration and CXCR2-dependent monocyte cluster formation. We showed that hair follicles shaped the inflammatory microenvironment for communication among the monocytes, keratinocytes, and effector T cells. After disrupting the T cell-mobilized monocyte clusters through CXCR2 antagonization, monocyte activation and keratinocyte apoptosis were significantly inhibited. Our study provides a new perspective on effector T cell-regulated monocyte behavior, which amplifies the inflammatory reaction in acquired cutaneous immunity.

On the abnormal fast diffusion of solute atoms in α-Ti: A first-principles investigation

Solute atoms such as Fe, Co, and Ni diffuse abnormally fast in α-Ti, which influences significantly the mechanical properties of the titanium alloys. Various mechanisms (e.g., the interstitial diffusion mechanism and solute-vacancy complex mechanism) have been proposed to account for the fast diffusion of these solutes in α-Ti. To elucidate such diffusion mechanism, a first-principles method is employed to calculate the formation energies, migration energy barriers, and solute-vacancy binding energies of the substitutional and interstitial solute atoms including Al, Si, Sn, V, Mn, Fe, Co, Ni, and Cu in α-Ti. Based on the calculated parameters, the diffusion mechanisms are discussed. Comparing the formation energies of the substitutional and interstitial solutes, we find that all the solute atoms prefer the substitutional configuration to the interstitial one. The interstitial migration energy barriers are quite low for all the solutes. Al and Sn diffuse mainly through normal vacancy mediated mechanism due to the high substitutional to interstitial preferential energy that leads to very low fraction of interstitial solutes (about 10−15∼10−16 at 1000 K) at thermal equilibrium state and high interstitial diffusion activation energy. The 3d metal solute atoms, especially Mn, Fe, and Co, are fast diffusers and the diffusion coefficients are dominated by the interstitial mechanism because of their sizable thermal equilibrium interstitial fractions (several percent at 1000 K). The solute-vacancy complex mechanism is not likely to account for the fast diffusions in α-Ti. We show that the direct chemical interaction between the solute and matrix atoms determines the site-occupancy of the solute atoms in α-Ti besides the atomic size effect that was commonly believed to be responsible for the fast diffusions.

Unveiling the effects of A-site substitutions on the oxygen ion migration in A2−xA′xNiO4+δ by first principles calculations

The effects of A-site substitutions on the interstitial oxygen formation energy and the migration energy in layered A2-xA'xNiO4+δ (A = selected lanthanides, A' = Ba, Sr, Ca) are investigated by first principles calculations. The interstitial oxygen formation energy is negative, in the range of -4.81 eV to -3.45 eV, strongly supporting easiness of formation of the interstitial oxygen defects in the (A,A')O rock salt plane. The Pr2NiO4+δ compound shows the lowest formation energy, indicating the highest amount of interstitial oxygen. Doping with alkaline earth cations (A') increases the formation energy of the interstitial oxygen, which prefers to be located far away from the dopants. Nevertheless, Ca seems to be the best choice, due to relatively low formation energy. Calculations for the four kinds of diffusion paths allow it to be predicted that the oxygen transport in A2-xA'xNiO4+δ is governed by the interstitialcy mechanism in the ab plane, because of the significantly lower energy barriers for this mechanism. An interesting finding is achieved for A2NiO4+δ (A = Pr, Nd, Sm), for which the energy barriers for the interstitialcy transport are negative (-0.47 eV, -0.33 eV and -0.02 eV, respectively), implying that the transition state is more stable than the assumed initial state. A new structural configuration is proposed in this work, with the adjacent apical oxygen located at the adjacent interstitial site, which shows ca. 0.5 eV lower free energy than that of the initial model. This result provides a new understanding for the location of the interstitial and the adjacent apical oxygens from an energetic point of view and supports previously published experimental data. It is found that alkaline earth doping at the A-site deteriorates the interstitial oxygen diffusion in La2-xA'xNiO4.25 materials, but concerning overall transport properties, Ca seems to be a good dopant from an energetic point of view, when compared with Ba and Sr.

Neutrophil-specific knockout demonstrates a role for mitochondria in regulating neutrophil motility in zebrafish.

ABSTRACTNeutrophils are fast-moving cells essential for host immune functions. Although they primarily rely on glycolysis for ATP, isolated primary human neutrophils depend on mitochondrial membrane potential for chemotaxis. However, it is not known whether mitochondria regulate neutrophil motility in vivo, and the underlying molecular mechanisms remain obscure. Here, we visualized mitochondria in an interconnected network that localizes to the front and rear of migrating neutrophils using a novel transgenic zebrafish line. To disrupt mitochondrial function genetically, we established a gateway system harboring the CRISPR/Cas9 elements for tissue-specific knockout. In a transgenic line, neutrophil-specific disruption of mitochondrial DNA polymerase, polg, significantly reduced the velocity of neutrophil interstitial migration. In addition, inhibiting the mitochondrial electron transport chain or the enzymes that reduce mitochondrial reactive oxygen species also inhibited neutrophil motility. The reduced cell motility that resulted from neutrophil-specific knockout of sod1 was rescued with sod1 mRNA overexpression, or by treating with scavengers of reactive oxygen species. Together, our work has provided the first in vivo evidence that mitochondria regulate neutrophil motility, as well as tools for the functional characterization of mitochondria-related genes in neutrophils and insights into immune deficiency seen in patients with primary mitochondrial disorders.This article has an associated First Person interview with the first author of the paper.

Ab initio simulations on charged interstitial oxygen migration in corundum

We have calculated possible migration trajectories for single-charged interstitial Oi− anion using large-scale hybrid density functional theory within linear combination of atomic orbitals approach to defective α-Al2O3 crystals. The most energetically favorable configuration for charged Oi− anion is formation of pseudo-dumbbell (split interstitial) with a regular Oreg ion. For charged interstitial oxygen migration, the energy barrier turns out to be ∼0.8–1.0 eV. This is considerably smaller than that for a neutral interstitial atoms (1.3 eV), in agreement with experimental data.

Migration of sodium and lithium interstitials in anatase TiO2

Titanium oxide and in particular anatase is an important material due to its high chemical stability and photocatalytic properties, with the drawback that its large band gap constrains its photocatalytic activity to only a small portion of the solar spectrum. Recently, titanium oxide has been doped with lithium and sodium to consider its potential application in Li-ion and Na-ion batteries, respectively. In the present investigation, we employ density functional theory to study the structure, electronic properties and migration of lithium and sodium interstitials in anatase as these can be important for battery applications. It is shown that the introduction of lithium and sodium interstitials results in energy levels into the band gap. The migration energy barriers of lithium and sodium interstitials are 0.32eV and 0.56eV respectively.

Lattice sites of ion-implanted Mn, Fe and Ni in 6H-SiC

Using radioactive isotopes produced at the CERN-ISOLDE facility, the lattice location of the implanted transition metal (TM) ions 56Mn, 59Fe and 65Ni in n-type single-crystalline hexagonal 6H-SiC was studied by means of the emission channeling technique. TM probes on carbon coordinated tetrahedral interstitial sites (TC) and on substitutional silicon sites (SSi,h+k) were identified. We tested for but found no indication that the TM distribution on SSi sites deviates from the statistical mixture of 1/3 hexagonal and 2/3 cubic sites present in the 6H crystal. The TM atoms partially disappear from TC positions during annealing at temperatures between 500 °C and 700 °C which is accompanied by an increase on SSi and random sites. From the temperature associated with these site changes, interstitial migration energies of 1.7–2.7 eV for Mn and Ni, and 2.3–3.2 eV for Fe were estimated. TM lattice locations are compared to previous results obtained in 3C-SiC using the same technique.