Microbial Polycyclic Aromatic Hydrocarbons Research Articles

Impact of arsenic and PAHs compound contamination on microorganisms in coking sites: From a community to individual perspective

Arsenic (As) and polycyclic aromatic hydrocarbons (PAHs) are highly toxic, carcinogenic and teratogenic, and are commonly found in soils of industrial sites such as coking plants. They exert environmental stresses on soil microorganisms, but their compounding effects have not been systematically studied. Exploring the effects of compound contamination on microbial communities, species and genes is important for revealing the ecological damage caused by compound contamination and offering scientific insights into soil remediation strategies. In this study, we selected soil samples from 0 to 100 cm depth of a coking site with As, PAHs and compound contamination. We investigated the compound effects of As and PAHs on microbial communities by combining high-throughput sequencing, metagenomic sequencing and genome assembly. Compared with single contamination, compound contamination reduced the microbial community diversity by 10.68%–12.07% and reduced the community richness by 8.39%–18.61%. The compound contamination decreased 32.41%–46.02% of microbial PAHs metabolic gene abundance, 11.36%–19.25% of cell membrane transport gene abundance and 12.62%–57.77% of cell motility gene abundance. Xanthobacteraceae, the biomarker for compound contaminated soils, harbors arsenic reduction genes and PAHs degradation pathways of naphthalene, benzo [a]pyrene, fluorene, anthracene, and phenanthrene. Its broad metabolic capabilities, encompassing sulfur metabolism and quorum sensing, facilitate the acquisition of energy and nutrients, thereby conferring ecological niche advantages in compound contaminated environments. This study underscores the significant impacts of As and PAHs on the composition and function of microbial communities, thereby enriching our understanding of their combined effects and providing insights for the remediation of compound contaminated sites.

Transfer and Degradation of PAHs in the Soil-Plant System: A Review.

Polycyclic aromatic hydrocarbons (PAHs) are highly toxic, persistent organic pollutants that threaten ecosystems and human health. Consistent monitoring is essential to minimize the entry of PAHs into plants and reduce food chain contamination. PAHs infiltrate plants through multiple pathways, causing detrimental effects and triggering diverse plant responses, ultimately increasing either toxicity or tolerance. Primary plant detoxification processes include enzymatic transformation, conjugation, and accumulation of contaminants in cell walls/vacuoles. Plants also play a crucial role in stimulating microbial PAHs degradation by producing root exudates, enhancing bioavailability, supplying nutrients, and promoting soil microbial diversity and activity. Thus, synergistic plant-microbe interactions efficiently decrease PAHs uptake by plants and, thereby, their accumulation along the food chain. This review highlights PAHs uptake pathways and their overall fate as contaminants of emerging concern (CEC). Understanding plant uptake mechanisms, responses to contaminants, and interactions with rhizosphere microbiota is vital for addressing PAH pollution in soil and ensuring food safety and quality.

Surfactant-enhanced anoxic degradation of polycyclic aromatic hydrocarbons (PAHs) in aged subsurface soil at high temperature (60 °C)

Thermally enhanced anoxic biodegradation is emerging as a promising method for removing PAHs from subsurface soil. However, some PAHs still remain in soil following remediation with thermally enhanced anoxic degradation due to low bioavailability of these residual PAHs. The effects of five surfactants (Tween 80, TX 100, Brij 30, SDS, and SDBS) on the desorption of PAHs, anoxic degradation of PAHs, and native bacteria in soil at high temperature (60 °C) were evaluated in this study. The desorption of PAHs in soil increased as surfactant concentration increased. Low doses of surfactants (0.08%, w/w) enhanced the growth of potential PAHs degrading bacteria and promoted the anoxic degradation of PAHs, whereas high doses of surfactants (0.3%–0.8%, w/w) displayed the opposite effect, and the degree of inhibition increased with increasing surfactant concentration. The results also indicated that the inhibitory effect of anionic surfactants (SDS and SDBS) on microbial growth and PAHs degradation is stronger than that of nonionic surfactants (Tween 80, TX 100 and Brij 30) at the same concentration. These results suggest a feasible way of enhancing the anoxic degradation of PAHs in soil where heat cannot be effectively utilized when in situ thermal desorption (ISTD) technology is used.

Understanding the role of graphene oxide in affecting PAHs biodegradation by microorganisms: An integrated analysis using 16SrRNA, metatranscriptomic, and metabolomic approaches

Graphene oxide (GO)-promoted microbial degradation technology is considered an important strategy to eliminate polycyclic aromatic hydrocarbons (PAHs) in the environment; however, the mechanism by which GO affects microbial degradation of PAHs has not been fully studied. Thus, this study aimed to analyze the effect of GO-microbial interaction on PAHs degradation at the microbial community structure, community gene expression, and metabolic levels using multi-omics combined technology. We treated PAHs-contaminated soil samples with different concentrations of GO and analyzed the soil samples for microbial diversity after 14 and 28 days. After a short exposure, GO reduced the diversity of soil microbial community but increased potential degrading microbial abundance, promoting PAHs biodegradation. This promotion effect was further influenced by the GO concentration. In a short period of time, GO upregulated the expression of genes involved in microbial movement (flagellar assembly), bacterial chemotaxis, two-component system, and phosphotransferase system in the soil microbial community and increased the probability of microbial contact with PAHs. Biosynthesis of amino acids and carbon metabolism of microorganisms were accelerated, thereby increasing the degradation of PAHs. With the extension of time, the degradation of PAHs stagnated, which may be due to the weakened stimulation of GO on microorganisms. The results showed that screening specific degrading microorganisms, increasing the contact area between microorganisms and PAHs, and prolonging the stimulation of GO on microorganisms were important means to improve the biodegradation efficiency of PAHs in soil. This study elucidates how GO affects microbial PAHs degradation and provides important insights for the application of GO-assisted microbial degradation technology.

Deep relationships between bacterial community and polycyclic aromatic hydrocarbons in soil profiles near typical coking plants.

Bacterial communities play an important role in maintaining the normal functioning of ecosystems; therefore, it is important to understand the effects of polycyclic aromatic hydrocarbons (PAHs) on the bacterial community. In addition, understanding the metabolic potential of bacterial communities for PAHs is important for the remediation of PAH-contaminated soils. However, the deep relationship between PAHs and bacterial community in coking plants is not clear. In this study, we determined the bacterial community and the concentration of PAHs in three soil profiles contaminated by coke plants in Xiaoyi Coking Park, Shanxi, China, using 16S rRNA and gas chromatography coupled with mass spectrometry, respectively. The results show that 2 ~ 3 rings PAHs are the main PAHs and Acidobacteria (23.76%) was the dominant bacterial community in three soil profiles. Statistical analysis showed that there were significant differences in the composition of bacterial communities at different depths and different sites. Redundancy analysis (RDA) and variance partitioning analysis (VPA) illustrate the influence of environmental factors (including PAHs, soil organic matter (SOM), and pH) on the vertical distribution of soil bacterial community, and PAHs were the main factors affecting the bacterial community in this study. The co-occurrence networks further indicated correlations between bacterial community and PAHs and found that Nap has the greatest effect on bacterial community compared with other PAHs. In addition, some operational taxonomic units (OTUs, OTU2, and OTU37) have the potential to degrade PAHs. PICRUSt2 (Phylogenetic Investigation of Communities by Reconstruction of Unobserved States) was used for further study on the potential of microbial PAHs degradation from a genetic perspective, which showed that different PAH metabolism genes were present in the genomes of bacterial communities in the three soil profiles, and a total of 12 PAH degradation-related genes were isolated, mainly dioxygenase and dehydrogenase genes.

Diversity of Microbial Communities, PAHs, and Metals in Road and Leaf Dust of Functional Zones of Moscow and Murmansk

The impact of geographical factors, functional zoning, and biotope type on the diversity of microbial communities and chemical components in the dust of urban ecosystems was studied. Comprehensive analyses of bacterial and fungal communities, polycyclic aromatic hydrocarbons (PAHs), and metals in road and leaf dust in three urban zones of Murmansk and Moscow with contrasting anthropogenic load were conducted. We found that the structure of bacterial communities affected the functional zoning of the city, biotope type, and geographical components. Fungal communities were instead impacted only by biotope type. Our findings revealed that the structure of fungal communities was mostly impacted by PAHs whereas bacterial communities were sensitive to metals. Bacteria of the genus Sphingomonas in road and leaf dust as indicators of the ecological state of the urban ecosystems were proposed.

Fine particles and pyrogenic carbon fractions regulate PAH partitioning and burial in a eutrophic shallow lake

Aquatic particles and organic carbon (OC) regulate the occurrence and transport of hydrophobic organic contaminants such as polycyclic aromatic hydrocarbons (PAHs) in water-suspended particle-sediment interfaces. Conventional studies on the mechanisms regulating the relationships between PAHs and total particles/OC have ignored micro-scale regulatory factors such as particle size and OC composition. Field research in the eutrophic shallow Lake Taihu, China, revealed that the fine particle fractions 2.7–10 μm in diameter had stronger PAH adsorption capacity and significantly regulated PAH particle size distribution and water-particle partitioning. Selective PAH biodegradation by planktonic microorganisms probably significantly weakened the capacity of the coarse fractions to regulate PAHs. OC fragments at different temperature gradients had markedly different influences on the particle size distribution of PAHs. High-temperature pyrogenic OC fractions (part of black carbon) were the principal OC regulatory factors for medium-to high-molecular-weight PAHs. However, the OC fragments did not directly affect the particle distribution of low-molecular-weight PAHs. During particle deposition and burial, microbial PAH utilization and efficiency probably regulated the burial potential of various hydrophobic PAH species. Biodegradation of relatively less hydrophobic PAHs with octanol-water partition coefficients (log Kow) < 5.8 showed an increasing trend with decreasing PAH hydrophobicity. Biological pump action of the relatively higher hydrophobic PAH species (log Kow > 5.8) showed a decreasing trend with increasing PAH hydrophobicity. The discoveries of the present work further clarified the mechanisms of PAH partitioning and burial in a eutrophic shallow lake and collectively provides a valuable reference for modeling the transport and dispersal mechanisms of hydrophobic, particle-bound organic contaminants in other aquatic ecosystems.

Polycyclic aromatic hydrocarbons accumulation in soil horizons of different temperate forest stands

AbstractPollution due to polycyclic aromatic hydrocarbons (PAHs) is a serious environmental issue. The aim of this study was to determine the effect of stand species composition on PAH content. The research covered the stand soils of the Rybnik Forest District, which experiences some of the highest deposition of industrial emissions in Europe. Pine, pine–oak and oak stands growing in the same soil conditions were selected for the study. Samples for further analyses were collected from the organic, humus mineral and mineral soil horizons. The organic C and N concentrations, pH, alkaline cation content, microbiological biomass of C and N, soil enzyme activity, soil organic matter (SOM) fractions and PAH content were determined. The oak stand soils were characterised by the lowest accumulation of PAHs (2936.0 μg kg−1) with high biochemical activity expressed by enzyme activity (dehydrogenases, N‐acetyl‐β‐d‐glucosaminidase, phosphatase) and high microbiological biomass. In contrast, pine stand soils are acidified; hence, SOM decomposition is slowed, resulting in a high accumulation of PAHs (3805.0 μg kg−1). A strong correlation (r = 0.825) between PAH accumulation and SOM free light fraction (fLF) C concentration was noted. The stand species composition plays an important role in shaping the quality and quantity of SOM and soil acidification, which is reflected in the microbial activity and PAH accumulation in forest soils. Such accumulation in forest soils is related to the fractional composition of SOM, which is due to the influence of species composition through the supplied biomass.

Synergy between fungi and bacteria promotes polycyclic aromatic hydrocarbon cometabolism in lignin-amended soil

Lignin enhanced biodegradation of polycyclic aromatic hydrocarbons (PAHs) in soil, but collaboration among soil microorganisms during this process remains poorly understood. Here we explored the relations between microbial communities and PAH transformation in soil microcosms amended with lignin. Mineralization of the four-ring benzo(a)anthracene (BaA), which was selected as a model, was determined by using an isotope-labeled tracer. The eukaryotic inhibitor cycloheximide and redox mediator ABTS were used to validate the fungal role, while microbial communities were monitored by amplicon sequencing. The results demonstrated that lignin significantly promoted BaA mineralization to CO2, which was inhibited and enhanced by cycloheximide and ABTS, respectively. Together with the increased abundance of Basidiomycota, these observations suggested an essential contribution of fungi to BaA biodegradation, which possibly through a ligninolytic enzyme-mediated pathway. The enrichment of Methylophilaceae and Sphingomonadaceae supported bacterial utilization of methyl and aryl groups derived from lignin, implicating cometabolic BaA degradation. Co-occurrence network analysis revealed increased interactions between fungi and bacteria, suggesting they played synergistic roles in the transformation of lignin and BaA. Collectively, these findings demonstrate the importance of synergy between fungi and bacteria in PAH transformation, and further suggest that the modulation of microbial interplay may ameliorate soil bioremediation with natural materials such as lignin.

Microbial community structure and co-occurrence are essential for methanogenesis and its contribution to phenanthrene degradation in paddy soil

Although polycyclic aromatic hydrocarbons (PAHs) degradation under methanogenesis is an ideal approach to remediating PAH-polluted soil, the contribution of methanogenesis to soil PAH elimination and the relationships between microbial ecological characteristics and PAH degradation during this process remain unclear. Here, we conducted a short-term (60 days) incubation using a paddy soil amended with phenanthrene and examined the effects of a specific methanogenic inhibitor (2-bromoethanesulfonate, BES) on this process. As treatment assessments, the methane production activity (MPA), phenanthrene degradation rate (PDR), and microbial ecological characteristics were determined. The results indicated that BES significantly inhibited both soil MPA and PDR, and we detected a positive relationship between MPA and PDR. Furthermore, BES significantly altered the soil microbial community structure, and it was the microbial community structure but not α-diversity was significantly correlated with soil MPA and PDR. BES decentralized the co-occurrence of bacterial genera but intensified the co-occurrence of methanogens. Moreover, certain bacterial taxa, including Bacteroidetes-vadinHA17, Gemmatimonas, and Sporomusaceae, were responsible for the MPA and PDR in this paddy soil. Collectively, these findings confirm the role of methanogenesis in PAH elimination from paddy soil, and reveal the importance of microbial co-occurrence characteristics in the determination of soil MPA and pollutant metabolism.

The effects of adsorptive materials on microbial community composition and PAH degradation at the sediment cap–water interface

Capping with layers of inert or adsorptive materials is used to control the release of polycyclic aromatic hydrocarbons (PAH) in sediment but little is known about microbial degradation processes in these materials. A rich native microbial community inhabits the sediment bed, and capping media can influence enrichment and biodegradation activity of benthic microorganisms. The aim of this study was to evaluate the effects of capping media (sand, organoclay, and powdered activated carbon [PAC]) on microbial communities under oxic conditions typical of the cap–water interface, where naphthalene degradation (model PAH) is likely to be maximized. Bench scale experiments compared naphthalene concentrations, nahAc biomarker abundance, microbial community composition, and cellular attachment in systems amended with adsorptive and non-adsorptive capping materials. Results indicate that activated carbon promoted and enhanced bioactivity; PAC treatments showed high biodegradation rates, nahAc biomarker levels, and attached biological growth consistent with enrichment of the PAH-degrading genus Pseudomonae. In contrast, sand did not enhance biological activity compared to media-free systems. Naphthalene strongly influenced microbial community composition at the species level in all treatments except organoclay, which promoted biological signatures commonly associated with impeding degradation activity. Data overall suggest that adsorptive capping materials can both promote (PAC) and inhibit (organoclay) bioactivity in the surficial layer of caps, indicating that media selection is critical to the design of bioactive capping systems.

Synergistic interactions of Desulfovibrio and Petrimonas for sulfate-reduction coupling polycyclic aromatic hydrocarbon degradation

Microbial sulfate-reduction coupling polycyclic aromatic hydrocarbon (PAH) degradation is an important process for the remediation of contaminated sediments. However, little is known about core players and their mechanisms in this process due to the complexity of PAH degradation and the large number of microorganisms involved. Here we analyzed potential core players in a black-odorous sediment using gradient-dilution culturing, isolation and genomic/metagenomic approaches. Along the dilution gradient, microbial PAH degradation and sulfate consumption were not decreased, and even a significant (p = 0.003) increase was observed in the degradation of phenanthrene although the microbial diversity declined. Two species, affiliated with Desulfovibrio and Petrimonas, were commonly present in all of the gradients as keystone taxa and showed as the dominant microorganisms in the single colony (SB8) isolated from the highest dilution culture with 93.49% and 4.73% of the microbial community, respectively. Desulfovibrio sp. SB8 and Petrimonas sp. SB8 could serve together as core players for sulfate-reduction coupling PAH degradation, in which Desulfovibrio sp. SB8 could degrade PAHs to hexahydro-2-naphthoyl through the carboxylation pathway while Petrimonas sp. SB8 might degrade intermediate metabolites of PAHs. This study provides new insights into the microbial sulfate-reduction coupling PAH degradation in black-odorous sediments.

Activated carbon stimulates microbial diversity and PAH biodegradation under anaerobic conditions in oil-polluted sediments

Biodegradation by microorganisms is a useful tool that helps alleviating hydrocarbon pollution in nature. Microbes are more efficient in degradation under aerobic than anaerobic conditions, but the majority of sediment by volume is generally anoxic. Incubation experiments were conducted to study the biodegradation potential of naphthalene—a common polycyclic aromatic hydrocarbon (PAH)—and the diversity of microbial communities in presence/absence of activated carbon (AC) under aerobic/anaerobic conditions. Radio-respirometry experiments with endogenous microorganisms indicated that degradation of naphthalene was strongly stimulated (96%) by the AC addition under anaerobic conditions. In aerobic conditions, however, AC had no effects on naphthalene biodegradation. Bioaugmentation tests with cultured microbial populations grown on naphthalene showed that AC further stimulated (92%) naphthalene degradation in anoxia. Analysis of the 16S rRNA gene sequences implied that sediment amendment with AC increased microbial community diversity and changed community structure. Moreover, the relative abundance of Geobacter, Thiobacillus, Sulfuricurvum, and methanogenic archaea increased sharply after amendment with AC under anaerobic conditions. These results may be explained by the fact that AC particles promoted direct interspecies electron transfer (DIET) between microorganisms involved in PAH degradation pathways. We suggest that important ecosystem functions mediated by microbes—such as hydrocarbon degradation—can be induced and that AC enrichment strategies can be exploited for facilitating bioremediation of anoxic oil-contaminated sediments and soils.

Effects of biochar and organic substrates on biodegradation of polycyclic aromatic hydrocarbons and microbial community structure in PAHs-contaminated soils

A incubation experiment was conducted to investigate whether combined amendment of biochar (B) and compost (CP), mushroom residue (M) and corn straw (Y) could enhance biodegradation of polycyclic aromatic hydrocarbons (PAHs) in contaminated soils. After 77 days of incubation, both B + M and B + Y significantly (p < 0.01) increased removal rate of PAHs compared with amendment of biochar alone. However, B+CP resulted in a significant (p < 0.01) decreasing of PAHs removal. Compared with no biochar and no organic substrates addition (CK) and B, both B+M and B+Y significantly (p < 0.01) enhanced concentrations of dissolved organic carbon (DOC) and were favorable for the microbial growth reflected by microbial biomass carbons (MBC) and emission of carbon dioxide. Redundancy analysis (RDA) indicated that B + CP, B + M and B + Y separated the bacterial community compared with CK and B. However, the community composition structure in B + CP was different from that of B + M and B + Y. Moreover, the abundance of some PAHs degraders and PAH degradation genes predicted by PICRUSt software was promoted by B + M or B + Y, whereas that was inhibited under B + CP. The present study suggested that both B + M and B + Y could accelerate biodegradation of PAHs mainly through increasing the concentration of DOC and the abundances of microbial PAH degraders in soils.

The distinct response of phenanthrene enriched bacterial consortia to different PAHs and their degradation potential: a mangrove sediment microcosm study.

Understanding the microbial community succession to polycyclic aromatic hydrocarbons (PAHs) and identification of important degrading microbial groups are crucial for the designing of appropriate bioremediation strategies. In the present study, two distinct phenanthrene enriched bacterial consortia were treated against high molecular weight (Pyrene, Benzo (a) pyrene and Benzo (a) fluoranthene) and the response was studied in term of taxonomic variations by using High Throughput Illumina sequencing and qPCR analysis. Overall, the type of PAHs significantly affected the composition and the relative abundance of bacterial communities while no obvious difference was detected between bacterial communities of benzo (a) pyrene and benzo (a) fluoranthene treatments. Genera, Novosphingobium, Pseudomonas, Flavobacterium, Mycobacterium, Hoeflae, and Algoriphagus dominated all PAHs treatment groups indicating that they could be the key PAHs degrading phylotypes. Due to the higher abundance of gram-negative PAH-ring hydroxylating dioxygenase gene than that of gram-positive bacteria in all treated groups, we speculated that gram-negative bacteria may contribute more in the PAH degradation. The studied sediments harbored rich PAHs degrading bacterial assemblages involved in both low and high molecular weight PAHs and these findings provided new insight into the perspective of microbial PAHs bioremediation in the mangrove ecosystem.

Effect of surface-tailored biocompatible organoclay on the bioavailability and mineralization of polycyclic aromatic hydrocarbons in long-term contaminated soil

A surface-tailored organoclay (palmitic acid-tailored Arquad®-modified bentonite, ABP) was prepared for the selective adsorption of cadmium in the presence of polycyclic aromatic hydrocarbon (PAH) contaminants in a long-term contaminated soil. The efficiency of the organoclay (ABP) and the effect of its parent clays were assessed concerning the microbial viability, metal immobilization and PAHs bioavailability and biodegradation in a long-term (70 days) soil incubation study. The surface-tailored organoclay (ABP) increased the bacterial growth by 5–7 fold than the control and parent clay-amended soil. With an increased effect of aging, the ABP immobilized more Cd from the soil solution (2-folds higher than the control soil), and simultaneously increased the bioavailability (1.6–1.8 fold) of low molecular weight PAHs related to the control soil and the parent clay-amended soils. The surface-tailored organoclay (ABP) could also increase the mineralization of 14C-labeled phenanthrene by ca. 1.3-fold relative to the control experiment under a 25-days of incubation.

Microbial community composition and PAHs removal potential of indigenous bacteria in oil contaminated sediment of Taean coast, Korea

The tidal flats near Sinduri beach in Taean, Korea, have been severely contaminated by heavy crude oils due to the Korea's worst oil spill accident, say the Hebei Spirit Oil Spill, in 2007. Crude oil compounds, including polycyclic aromatic hydrocarbons (PAHs), pose significant environmental damages due to their wide distribution, persistence, high toxicity, mutagenicity, and carcinogenicity. Microbial community of Sinduri beach sediments samples was analyzed by metagenomic data with 16S rRNA gene amplicons. Three phyla (Proteobacteria, Firmicutes, and Bacteroidetes) accounted for approximately ≥93.0% of the total phyla based on metagenomic analysis. Proteobacteria was the dominant phylum in Sinduri beach sediments. Cultivable bacteria were isolated from PAH-enriched cultures, and bacterial diversity was investigated through performing culture characterization followed by molecular biology methods. Sixty-seven isolates were obtained, comprising representatives of Actinobacteria, Firmicutes, α- and γ-Proteobacteria, and Bacteroidetes. PAH catabolism genes, such as naphthalene dioxygenase (NDO) and aromatic ring hydroxylating dioxygenase (ARHDO), were used as genetic markers to assess biodegradation of PAHs in the cultivable bacteria. The ability to degrade PAHs was demonstrated by monitoring the removal of PAHs using a gas chromatography mass spectrometer. Overall, various PAH-degrading bacteria were widely present in Sinduri beach sediments and generally reflected the restored microbial community. Among them, Cobetia marina, Rhodococcus soli, and Pseudoalteromonas agarivorans were found to be significant in degradation of PAHs. This large collection of PAH-degrading strains represents a valuable resource for studies investigating mechanisms of PAH degradation and bioremediation in oil contaminated coastal environment, elsewhere.

Biochar reduces the bioaccumulation of PAHs from soil to carrot (Daucus carota L.) in the rhizosphere: A mechanism study

The aim of this study was to reveal the mechanisms on how biochar reduces bioaccumulation of polycyclic aromatic hydrocarbons (PAHs) in tuberous vegetables. Corn straw-derived biochar pyrolyzed at 300°C (CB300) or bamboo-derived biochar pyrolyzed at 700°C (BB700) was amended into PAH-contaminated soil planted with carrot (Daucus carota L.). After 150days, 2% CB300 or 2% BB700 amendments significantly reduced the bioaccumulation of PAHs in carrot root (p<0.05), especially for high-molecular-weight PAHs. In the non-rhizosphere, either CB300 or BB700 suppressed PAH dissipation and decreased the bioavailability via adsorption processes. Compared to the control, the total concentration of PAHs in the rhizosphere was higher in the 2% BB700 treatment but the bioavailable concentration was lower. This indicates that BB700 decreased the bioavailability of PAHs primarily via immobilization (adsorption processes). By contrast, the total and bioavailable PAH concentrations were both lower in the 2% CB300 treatment than those in the control. The abundance of bacteria such as Arthrobacter and Flavobacterium and the total number of genes playing important roles in microbial PAH degradation processes increased significantly (p<0.05), which were likely responsible for the rapid dissipation of PAHs in the 2% CB300 treatment in the rhizosphere. These results indicate that CB300 decreased the PAH bioavailability primarily via increasing degradation of PAHs by indigenous microorganisms. The two biochars both showed better effectiveness at reducing the bioavailability of high-molecular-weight PAHs than the low-molecular-weight PAHs in the rhizosphere. Therefore, the mechanisms on how biochar reduces the PAH uptake into carrot are dependent on the type of biochar (e.g., pyrolysis temperature and feedstock) and root presence.

The impact of dissolved inorganic nitrogen and phosphorous on responses of microbial plankton to the Texas City “Y” oil spill in Galveston Bay, Texas (USA)

Ongoing bioremediation research seeks to promote naturally occurring microbial polycyclic aromatic hydrocarbon (PAH) degradation during and after oil spill events. However, complex relationships among functionally different microbial groups, nutrients and PAHs remain unconstrained. We conducted a surface water survey and corresponding nutrient amendment bioassays following the Texas City “Y” oil spill in Galveston Bay, Texas. Resident microbial groups, defined as either heterotrophic or autotrophic were enumerated by flow cytometry. Heterotrophic abundance was increased by oil regardless of nutrient concentrations. Contrastingly, autotrophic abundance was inhibited by oil, but this reaction was less severe when nutrient concentrations were higher. Several PAH compounds were reduced in nutrient amended treatments relative to controls suggesting nutrient enhanced microbial PAH processing. These findings provide a first-look at nutrient limitation during microbial oil processing in Galveston Bay, an important step in understanding if nutrient additions would be a useful bioremediation strategy in this and other estuarine systems.

Effects of different agricultural wastes on the dissipation of PAHs and the PAH-degrading genes in a PAH-contaminated soil

Land application of agricultural wastes is considered as a promising bioremediation approach for cleaning up soils contaminated by aged polycyclic aromatic hydrocarbons (PAHs). However, it remains largely unknown about how microbial PAH-degraders, which play a key role in the biodegradation of soil PAHs, respond to the amendments of agricultural wastes. Here, a 90-day soil microcosm study was conducted to compare the effects of three agricultural wastes (i.e. WS, wheat stalk; MCSW, mushroom cultivation substrate waste; and CM, cow manure) on the dissipation of aged PAHs and the abundance and community structure of PAH-degrading microorganisms. The results showed that all the three agricultural wastes accelerated the dissipation of aged PAHs and significantly increased abundances of the bacterial 16S rRNA and PAH-degrading genes (i.e. pdo1 and nah). CM and MCSW with lower ratios of C:N eliminated soil PAHs more efficiently than WS with a high ratio of C:N. Low molecular weight PAHs were dissipated more quickly than those with high molecular weight. Phylogenetic analysis revealed that all of the nah and C12O clones were affiliated within Betaproteobacteria and Gammaproteobacteria, and application of agricultural wastes significantly changed the community structure of the microorganisms harboring nah and C12O genes, particularly in the CM treatment. Taken together, our findings suggest that the three tested agricultural wastes could accelerate the degradation of aged PAHs most likely through changing the abundances and community structure of microbial PAH degraders.