Laboratory Data Acquisition Research Articles

Ontology-Based Laboratory Data Acquisition With EnzymeML for Process Simulation of Biocatalytic Reactors

The presented work explores the use of ontologies and standardized enzymatic data to set up enzymatic reactions in process simulators, such as DWSIM. Setting up an automated workflow to start a process simulation based on enzymatic data obtained from the laboratory can help save costs and time during the development phase. Standardized conditions are crucial for accurate comparison and analysis of enzymatic data, where ontologies provide a standardized vocabulary and semantic relations between relevant concepts. To ensure standardized data, an electronic lab notebook (ELN) is used based on EnzymeML, an open standard XML-based format for enzyme kinetics data. Furthermore, two ontologies are merged and the result is extended for the use in the Python-based workflow. The resulting data is stored in a knowledge graph for research data in a machine-accessible and human-readable format. Thus, the study demonstrates a workflow that allows for the direct translation of ELN data into a process simulation via ontologies.

Coal-gangue recognition via multi-branch convolutional neural network based on MFCC in noisy environment

Traditional coal-gangue recognition methods usually do not consider the impact of equipment noise, which severely limits its adaptability and recognition accuracy. This paper mainly studies the more accurate recognition of coal-gangue in the noise site environment with the operation of shearer, conveyor, transfer machine and other device in the process of top coal caving. Mel Frequency Cepstrum Coefficients (MFCC) smoothing method was introduced to express the intrinsic feature of sound pressure more clearly in the coal-gangue recognition site. Then, a multi-branch convolution neural network (MBCNN) model with three branches was developed, and the smoothed MFCC feature was incorporated into this model to realize the recognition of falling coal and gangue in noisy environment. The sound pressure signal datasets under the operation of different device were constructed through a great deal of laboratory and site data acquisition. Comparative experiments were carried out on noiseless dataset, single noise dataset and simulated site dataset, and the results show that our method can provide higher correct recognition accuracy and better robustness. The proposed coal-gangue recognition approach based on MBCNN and MFCC smoothing can not only recognize the state of falling coal or gangue, but also recognize the operational state of site device.

Cardioprotective Effect of Rumex vesicarius Linn. Leaf Extract against Catecholamine-Induced Cardiotoxicity.

Rumex vesicarius (L.) is a folklore medicinal herb that has been used for centuries to cure cardiovascular diseases. The present work was carefully designed to ascertain the pharmacological basis for R. vesicarius’s therapeutic efficacy in cardiovascular diseases, as well as the underlying mechanism. In the ex vivo investigation, the aqueous-methanolic leaf extract of R. vesicarius was shown to have endothelium-dependent vasorelaxant effects in rabbit aorta tissue preparations, and its hypotensive responses were quantified by pressure and force transducers coupled to the Power Lab Data Acquisition System. Furthermore, when rabbits were subjected to adrenaline-induced myocardial infarction, R. vesicarius demonstrated cardioprotective characteristics. In contrast to the intoxicated group, the myocardial infarction model showed lower ALP, CK-MB, CRP, LDH, ALT, troponin, and AST levels (p > 0.005–0.000), as well as edema, necrosis, apoptosis, inflammatory cell enrolment, and necrosis. R. vesicarius exhibited significant antioxidant activity and delayed noradrenaline-induced platelet aggregation. Its cardioprotective, anticoagulant, and vasorelaxant properties in both investigations (in vivo and ex vivo) are mediated through partial endothelium-dependent, NO and calcium channel blockade mediated vasorelaxation. The minimizing of adrenaline, oxidative stress, and tissue damage demonstrate its therapeutic efficacy in cardiovascular diseases.

Therapeutic potential of Ceratonia siliqua extract for the management of asthma and hypertension.

The current work was performed to explore the pharmacological mechanisms involved in the management of asthma and hypertension along with the safety profile of the Ceratonia siliqua (C. siliqua/Carob) pods. The bronchorelaxant, vasorelaxant, and cardioselective activities of C. siliqua pods were investigated using isolated rabbit tracheal, aortic, and paired atrial fragments on the Power lab data acquisition system. Normotensive rats were used to study antihypertensive activity. The plant extract and its fractions relaxed the carbachol-induced contraction in the tracheal fragments and shifted the concentration-response curve of carbachol towards the right confirming the muscarinic receptor antagonist activity. The relaxation of phenylephrine-induced contraction in an aortic fragment by the extract showed α- adrenergic blocking activity. Furthermore, the extract produced a cardio-selective response in the paired atria and decreased the blood pressure in anesthetized normotensive rats. The plant extract proved to be non-toxic in oral acute and chronic toxicity studies and did not demonstrate any sign of histopathological lesions. These results suggested that the plant extract was non-toxic and could be used in the management of lifetime therapies of respiratory and cardiovascular disorders without any unwanted effects.

Dose-dependent Spasmolytic, Bronchodilator, and Hypotensive Activities of Panicum miliaceum L.

Panicum miliaceum L. is a medicinally effective plant used in indigenous system of medicine for a variety of ailments. However, there is no comprehensive study explaining its effectiveness in gastrointestinal tract, respiratory, and cardiovascular system ailments. This study was designed to validate the pharmacological basis for the folkloric use of Panicum miliaceum L. in diarrhea, asthma, and hypertension. Panicum miliaceum extract was analyzed to detect the presence of bioactive compounds by HPLC. The isolated rabbit jejunum, trachea, and aorta were used for in vitro experiments using tissue bath assembly coupled with Power Lab data acquisition system to explore their relative effects. In-vivo experiments were performed for anti-diarrheal activity. HPLC analysis revealed the presence of gallic acid, butylated hydroxytoluene, catechin, and quercetin. Concentration dependent activities were observed by relaxing K+ (low) induced contractions having spasmolytic effect with EC50 = .358 ± .052, bronchodilator (EC50 = 2.483 ± .05793), and vasorelaxant (EC50 = .383 ± .063), probably due to the ATP dependent potassium channel activation. It was confirmed through pre-exposure of glibenclamide (specific ATP-dependent K+ channel blocker) having similarities with cromakalim. Pm.Cr revealed its antidiarrheal via in vivo experiments on rats. This study indicates that Panicum miliaceum has antidiarrheal, spasmolytic, bronchodilator, and vasorelaxant activities probably due to the ATP dependent K+ channel activation.

Pharmacological Justification for the Medicinal Use of Plumeria rubra Linn. in Cardiovascular Disorders.

Plumeria rubra (L.) is a traditional folkloric medicinal herb used to treat cardiovascular disorders. The present investigation was methodically planned to investigate the pharmacological foundations for the therapeutic effectiveness of P. rubra in cardiovascular illnesses and its underlying mechanisms. Ex vivo vaso-relaxant effects of crude leaf extract of P. rubra were observed in rabbit aorta ring preparations. Hypotensive effects were measured using pressure and force transducers connected to the Power Lab data acquisition system. Furthermore, P. rubra displayed cardioprotective properties in rabbits when they were exposed to adrenaline-induced myocardial infarction. In comparison to the intoxicated group, the myocardial infarction model showed decreased troponin levels, CK-MB, LDH, ALT, ALP, AST, and CRP, as well as necrosis, apoptosis, oedema, and inflammatory cell enrollment. P. rubra has revealed good antioxidant properties and prolonged the noradrenaline intoxicated platelet adhesion. Its anticoagulant, vasorelaxant, and cardioprotective effects in both in vivo and ex vivo investigations are enabled by blocking L-type calcium channels, lowering adrenaline, induced oxidative stress, and tissue tear, justifying its therapeutic utility in cardiovascular disorders.

Jasminum sambac: A Potential Candidate for Drug Development to Cure Cardiovascular Ailments.

Jasminum sambac (L.) is a South Asian folkloric medicinal plant that has traditionally been used to treat cardiovascular problems. The current investigation was meticulously organized to explore the pharmacological foundation for the medicinal uses of J. sambac pertaining to cardiovascular ailments and to investigate the core mechanisms. Mechanistic investigation revealed that crude leaf extract of J. sambac produced ex-vivo vasorelaxant effects in endotheliumintact aorta ring preparation and hypotensive effect was recorded via pressure and force transducers coupled to the Power Lab Data Acquisition System. Moreover; J. sambac showed cardioprotective effects against adrenaline -induced left ventricular hypertrophy in rabbits observed hemodynamic. CK-MB, LDH, troponin, CRP, ALT, AST, ALP levels were shown to be lower in the myocardial infarction model, as were necrosis, oedema, and inflammatory cell recruitment in comparison to control. J. sambac has shown good antioxidant potential as well as prolonged the noradrenaline induced platelet adhesion. The vasorelaxant and cardioprotective effects in both in vivo and ex vivo experiments, which are enabled by activation of muscarinic receptor and/or releasing the nitric oxide and by reducing the adrenaline, induced oxidative stress, justifying its usage in cardiovascular disorders.

Argemone mexicana extract alleviates gastrointestinal disorders by stimulating muscarinic receptors and blocking voltage-gated L-type calcium channels

Objective: To investigate the pharmacological potential of Argemone mexicana in treating constipation and emesis by using in vitro and in vivo models. Methods: The spasmogenic and spasmolytic effects were evaluated on isolated rabbit jejunum fragments loaded in a tissue organ bath. The response was recorded with an isotonic transducer attached with Power Lab Data Acquisition System. The laxative and antiemetic activities were assessed in BALB-c mice and poultry chicks challenged with carbamylcholine and copper sulphate stimulated emesis, respectively. Results: The total phenolic and total flavonoids contents of the extract were (267.75 ± 5.77) mg GAE/g and (73.86 ± 6.01) mg QE/g, respectively. Argemone mexicana extract exerted spasmogenic effect on isolated rabbit jejunum segments with an EC50 value of 0.016 mg/ mL, which was blocked by atropine (0.3 μM). Argemone mexicana extract exerted spasmolytic effect in atropine treated jejunum fragments with an EC50 value of 2.185 mg/mL. Furthermore, Argemone mexicana extract relaxed potassium (80 mM)-induced contractions (EC50: 9.07 mg/mL), similar to a standard drug verapamil. The calcium channel blocker activity was confirmed by a rightward shift of concentration-response curve of calcium in the presence of Argemone mexicana extract (1-5 mg/mL) and verapamil (0.1-1 μM). In addition, the extract increased the distance travelled by a charcoal in the gastrointestinal tract and exhibited antiemetic effect on copper sulphate induced emesis in chicks. Conclusions: Argemone mexicana shows cholinergic agonist and calcium channel blocker activities, as well as antiemetic effect. It may be used as a potential agent for treating gastrointestinal disorders.

Histological and Physiological Studies of the Effect of Bone Marrow-Derived Mesenchymal Stem Cells on Bleomycin Induced Lung Fibrosis in Adult Albino Rats.

Background:Lung fibrosis is considered as an end stage for many lung diseases including lung inflammatory disease, autoimmune diseases and malignancy. There are limited therapeutic options with bad prognostic outcome. The aim of this study was to explore the effect of mesenchymal stem cells (MSCs) derived from bone marrow on Bleomycin (BLM) induced lung fibrosis in albino rats.Methods:30 adult female albino rats were distributed randomly into 4 groups; negative control group, Bleomycin induced lung fibrosis group, lung fibrosis treated with bone marrow-MSCs (BM-MSCs) and lung fibrosis treated with cell free media. Lung fibrosis was induced with a single dose of intratracheal instillation of BLM. BM-MSCs or cell free media were injected intravenously 28 days after induction and rats were sacrificed after another 28 days for assessment. Minute respiratory volume (MRV), forced vital capacity (FVC) and forced expiratory volume 1 (FEV1) were recorded using spirometer (Power lab data acquisition system). Histological assessment was performed by light microscopic examination of H&E, and Masson’s trichrome stained sections and was further supported by morphometric studies. In addition, electron microscopic examination to assess ultra-structural changes was done. Confocal Laser microscopy and PCR were used as tools to ensure MSCs homing in the lung.Results:Induction of lung fibrosis was confirmed by histological examination, which revealed disorganized lung architecture, thickened inter-alveolar septa due excessive collagen deposition together with inflammatory cellular infiltration. Moreover, pneumocytes depicted variable degenerative changes. Reduction in MRV, FVC and FEV1 were recorded. BM-MSCs treatment showed marked structural improvement with minimal cellular infiltration and collagen deposition and hence restored lung architecture, together with lung functions.Conclusion:MSCs are promising potential therapy for lung fibrosis that could restore the normal structure and function of BLM induced lung fibrosis.Electronic supplementary materialThe online version of this article (10.1007/s13770-020-00294-0) contains supplementary material, which is available to authorized users.

Studies to Elucidate the Mechanism of Cardio Protective and Hypotensive Activities of Anogeissus acuminata (Roxb. ex DC.) in Rodents.

Anogeissus acuminata (Roxb. ex DC.) is a folkloric medicinal plant in Asia; including Pakistan; used as a traditional remedy for cardiovascular disorders. This study was planned to establish a pharmacological basis for the trivial uses of Anogeissus acuminata in certain medical conditions related to cardiovascular systems and to explore the underlying mechanisms. Mechanistic studies suggested that crude extract of Anogeissus acuminata (Aa.Cr) produced in vitro cardio-relaxant and vasorelaxant effects in isolated paired atria and aorta coupled with in vivo decrease in blood pressure by invasive method; using pressure and force transducers connected to Power Lab Data Acquisition System. Moreover; Aa.Cr showed positive effects in left ventricular hypertrophy in Sprague Dawley rats observed hemodynamically by a decrease in cardiac cell size and fibrosis; along with absence of inflammatory cells; coupled with reduced levels of angiotensin converting enzyme (ACE) and renin concentration along with increased concentrations of nitric oxide (NO) and cyclic guanosine monophosphate (cGMP). In Acute Myocardial Infarction (AMI) model; creatine kinase (CK), creatine kinase-MB (CK-MB) and lactic acid dehydrogenase (LDH levels) were found to be decreased; along with decreased necrosis; edema and recruitment of inflammatory cells histologically. In vivo and ex vivo studies of Anogeissus acuminata provided evidence of vasorelaxant; hypotensive and cardioprotective properties facilitated through blockage of voltage-gated Ca++ ion channel; validating its use in cardiovascular diseases

Ex vivo and in vivo studies of Viola tricolor Linn. as potential cardio protective and hypotensive agent: Inhibition of voltage-gated Ca++ ion channels.

Viola tricolor Linn. is used as cardio-protective and anti-hypertensive agent in traditional medicine. Current study objective was to evaluate cardio-protective and hypotensive effects of Viola tricolor L. in vitro and in vivo studies. Viola tricolor L. crude extract (Vt.Cr) and its fractions (Aqueous and organic) were tested at rabbit atria and aorta coupled to Power Lab Data Acquisition System for cardio depressant and vasorelaxant effects in vitro whereas in vivo Blood Pressure was checked by invasive method in normotensive ketamine-diazepam anesthetized rats. Isoproterenol was employed for acute myocardial infarction (AMI) and left ventricular hypertrophy (LVH) development and cardioprotective effects of Vt.Cr were evaluated hemodynamically and histopathologically. Vt.Cr and its fractions decreased heart rate and contractile force in paired atria and relaxed Phenylephrine (1µM) and K+ (80mM) stimulated contractions in aorta possibly mediated through Voltage dependent L-type calcium channels blockage supported by in vivo hypotensive action. In LVH, Vt.Cr lowered Angiotensin Converting Enzymes and renin, increased cyclic Guanosine Monophosphate and nitric oxide levels, decreased cardiomyocytes size and fibrosis attributed to Gallic acid as detected by High Performance Liquid Chromatography. Partial positive results were seen hemodynamically and histologically in AMI Viola tricolor L. showed vasorelaxant, cardio-relaxant, hypotensive, and cardio protective effect validating traditional practice in cardiovascular disorders.

Be FAIR to your data

Wouldn’t it be great, if experimental data were findable wherever they were? If experimental data were accessible‚ regardless of the storage place and format? If experimental data were interoperable independent of the author or its origin? If experimental data were reusable for further analysis without experimental repetition? The current state of the art of data acquisition in the laboratory is very diverse. A lot of different devices are used, analogue as well as digital ones. Usually all experimental setups and observations are summarized in a handwritten lab notebook, independently from digital or analogue sources. To change the actual and common way of laboratory data acquisition into a digital and modern one, electronic lab notebooks can be used. A challenge of science is to facilitate knowledge discovery by assisting humans and machines in their discovery of scientific data and their associated algorithms and workflows. FAIR describes a set of guiding principles to make data Findable, Accessible, Interoperable, and Reusable.

1,3,4‐thiadiazines as promising compounds acting on the serotonin turnover

According to the previous data, 1,3,4‐thiadiazines are able to reduce the stress reaction's magnitude and acts like the atypical neuroleptics. Thus, the aim of the present study was to analyze the influence of 1,3,4‐thiadiazine compound (L‐17) on the serotonin turnover in silico and in vivo.In silico studiesThe target proteins of in silico study included the serotonin receptor type 3A (5‐HT3A) and the serotonin transporter (SERT). For the evaluation of the L‐17 compound's affinity, the docking of the compound to the specific binding sites of these proteins was performed. Experimental X‐ray 3D models were obtained from Protein Data Bank in Europe. The 3‐D model of the L‐17 compound was constructed using the molecular mechanics methods in the MarvinSketch 15.6.15 program, followed by optimization with the semi‐empirical quantum chemical method PM7 in the MOPAC2016 program. The docking was performed using AutoDockVina 1.1.2.In vivo studiesAdult male Wistar rats (200–250 g) were housed in a temperature‐controlled room with a 12:12 hours light‐dark cycle. All experimental procedures were approved by the Animal Care and Use Committee and conformed to the Directive 2010/63/EU of the European Parliament. The rats received intravenous (i.p.) injections of L‐17 (0.1–12 mg/kg) dissolved in saline. Control animals were injected saline using the same protocol. One hour after the last saline or L‐17 injection, rats were anesthetized with chloral hydrate and mounted into the stereotaxic frame. The scalp was opened and a 3 mm hole was drilled in the skull for insertion of electrodes. Serotonin neurons were identified by their typical firing rate, positive bi‐ or tri‐phasic action potential and the cumulative duration of depolarization and repolarization phases, and recorded for at least two minutes using the Power Lab data acquisition system and Lab Chart software.ResultsAccording to the results of the in silico prediction, the values of the docking energy of the L‐17 compound in the binding sites for SERT were 8.1 and 8.3 kcal/mol for 5‐HT3A and SERT, respectively. Molecular docking revealed that the moderate serotonin‐blocking effect of L‐17 was due, above all, to a sufficiently high affinity for SERT; the direct antagonism to 5‐HT3A receptors was negligible. According to the electrophysiological study results, the mean basal firing activity was 3.46±0.83 Hz. L‐17 (0.1–12 mg/kg, i.v.) significantly and dose‐dependently (Fdf 8,53=4.84, p<0.001, ANOVA for repeated measured) inhibited the firing activity of 5‐Ht neurons, reaching the maximal 90%‐ inhibition at 12 mg/kg. WAY100135 partially reversed the L17‐induced inhibition of 5‐HT neurons.Thus, the electrophysiological study confirmed the results of in silico prediction, identifying SERT as a potential biotarget of the promising compounds from the group of substituted 1,3,4‐thiadiazines.Support or Funding InformationThr study was supported by the Russian Science Foundation (project 17‐15‐01318)This abstract is from the Experimental Biology 2019 Meeting. There is no full text article associated with this abstract published in The FASEB Journal.

The effects of moderate running exercise and L-tyrosine on penicillin-induced epileptiform activity in rats

Regular exercise and amino acid supplementation, popular approaches toward the reduction of epileptic seizures, have been extensively researched. This study was conducted to evaluate the effects of treadmill exercise and L-tyrosine treatment on the frequency and amplitude of epileptiform activity in rats. A total of 32 male albino Wistar rats were randomly divided into four groups: control, exercise, L-tyrosine, and exercise + L-tyrosine. L‑tyrosine was supplemented by oral gavage (500 mg/kg/day, 2.5 mL solution). The treatments were performed 5 days a week for 10 weeks. The rats were anesthetized and then administered 500 IU penicillin into the left cerebral cortex using a microinjector and electrocorticogram (ECoG) activity was recorded for 3 hours using a Power Lab data acquisition system. The frequency and the amplitude of the ECoG recordings were analyzed offline. Compared to the control group, spike frequency decreased significantly in all other groups. There was no statistically significant difference between the groups in terms of spike amplitude and latency. In this study, the effects of regularly administered treadmill exercise and L-tyrosine use on epileptiform activity were examined and evaluated together for the first time. The results of this study showed that regular exercise and L-tyrosine use decreased epileptiform activity. Further research and clinical trials are needed to investigate the extent to which L-tyrosine and physical activity interfere with the epileptic state by investigating different doses of L-tyrosine and different severity/ time/type of exercise protocols.

Testing the efficiency of rover science protocols for robotic sample selection: A GeoHeuristic Operational Strategies Test

The GHOST field tests are designed to isolate and test science-driven rover operations protocols, to determine best practices. During a recent field test at a potential Mars 2020 landing site analog, we tested two Mars Science Laboratory data-acquisition and decision-making methods to assess resulting science return and sample quality: a linear method, where sites of interest are studied in the order encountered, and a “walkabout-first” method, where sites of interest are examined remotely before down-selecting to a subset of sites that are interrogated with more resource-intensive instruments. The walkabout method cost less time and fewer resources, while increasing confidence in interpretations. Contextual data critical to evaluating site geology was acquired earlier than for the linear method, and given a higher priority, which resulted in development of more mature hypotheses earlier in the analysis process. Combined, this saved time and energy in the collection of data with more limited spatial coverage. Based on these results, we suggest that the walkabout method be used where doing so would provide early context and time for the science team to develop hypotheses-critical tests; and that in gathering context, coverage may be more important than higher resolution.

Pharmacological basis for the medicinal use of Michelia champaca in gut, airways and cardiovascular disorders

Objective: To discover the mechanism behind ameliorative effects of Michelia champaca (M. champaca) in gastrointestinal, respiratory and cardiovascular disorders. Methods: Anti- spasmodic potential was evaluated by trying the M. champaca extract (aqueous:ethanolic) on rabbit aorta, trachea and jejunum in vitro. Isotonic and isometric transducers coupled with Power Lab data acquisition system was used to record the responses of isolated tissues. Results: M. champaca extract relaxed the spontaneous and high K+ (80 mmol/L)-induced contractions of isolated jejunum preparation of rabbit showing a Ca2+ channel blocking mechanism. Moreover, extract shifted calcium concentration response curves towards right like standard calcium channel blocker verapamil. In rabbit tracheal preparation, M. champaca relaxed both carbachol (1 1 μmol/L) and high K+-induced contractions, likewise verapamil. In rabbit aorta preparation, M. champaca relaxed phenylephrine (1 μmol/L) and high K+-induced contractions similar to verapamil. Conclusion: M. champaca possesses spasmolytic, airways relaxant and vasodilator actions mediated perhaps due to blocking of Ca2+ channels, hence validating its therapeutic usage in diarrhea, asthma and hypertension.

Vipassana Meditation Practices Enhance the Parasympathetic Activity during Sleep: a Case-Control Study of Heart Rate Variability across Sleep Cycles

1.1.Background:Sleep state related cardiac autonomic modulations are important for proper cardiovascular functions and to maintain homeostasis during sleep. The present study evaluates the efficacy of Vipassana meditation on cardio autonomic dynamicity across sleep cycles during sleep. 1.2.Methods:26 Senior Vipassana meditation practitioners and 23 non-meditating control subjects participated in the study. Whole night polysomnography with lead II ECG were carried out using 32 channel, 2110 digital EEG system (Nihon Kohden, Japan) and with 16 channels Power Lab data acquisition system (AD Instruments, Australia . Differences in sleep variables across sleep cycles among the meditation practitioners and control groups (between groups ) were analyzed by two way ANOVA with turkey posthoc test .The heart rate variability (HRV) was assessed during N2 and N3 and REM sleep state across three consecutive sleep cycles. The HRV variables-High frequency power (HF) and low frequency power (LF) density, their normalized units (HFnu and LFnu) and ratio (LF/HF ratio) were compared across sleep cycles using Analysis of variance with repeated measures for within group and ‘t’ test for between groups. 1.3.Results:Vipassana meditators showed significantly high HFnu irrespective of sleep states across sleep cycles. During REM sleep, as HF nu was concomitantly enhanced along with increased LFnu, the LF/HF ratio was reduced in meditators .In addition, meditators showed distinct sleep architecture with enhanced slow wave sleep and REM sleep states along with significantly reduced intermittent awakenings indicative of proper sleep organisation. 1.4.Conclusion: Vipassana meditation practice helps to establish a proper cardio autonomic dynamicity during sleep with a persistent increase in parasympathetic activity across sleep states. Such a state of heightened parasympathetic activity especially during REM sleep helps to buffer the sympathetic surges and helps to maintain a proper sympatho-vagal balance essential for quality sleep and cardio protection.

Cross-species 3D virtual reality toolbox for visual and cognitive experiments

BackgroundAlthough simplified visual stimuli, such as dots or gratings presented on homogeneous backgrounds, provide strict control over the stimulus parameters during visual experiments, they fail to approximate visual stimulation in natural conditions. Adoption of virtual reality (VR) in neuroscience research has been proposed to circumvent this problem, by combining strict control of experimental variables and behavioral monitoring within complex and realistic environments. New methodWe have created a VR toolbox that maximizes experimental flexibility while minimizing implementation costs. A free VR engine (Unreal 3) has been customized to interface with any control software via text commands, allowing seamless introduction into pre-existing laboratory data acquisition frameworks. Furthermore, control functions are provided for the two most common programming languages used in visual neuroscience: Matlab and Python. ResultsThe toolbox offers milliseconds time resolution necessary for electrophysiological recordings and is flexible enough to support cross-species usage across a wide range of paradigms. Comparison with existing methodsUnlike previously proposed VR solutions whose implementation is complex and time-consuming, our toolbox requires minimal customization or technical expertise to interface with pre-existing data acquisition frameworks as it relies on already familiar programming environments. Moreover, as it is compatible with a variety of display and input devices, identical VR testing paradigms can be used across species, from rodents to humans. ConclusionsThis toolbox facilitates the addition of VR capabilities to any laboratory without perturbing pre-existing data acquisition frameworks, or requiring any major hardware changes.

Rationalizing ethnopharmacological uses of Alternanthera sessilis: A folk medicinal plant of Pakistan to manage diarrhea, asthma and hypertension

Ethnopharmacological relevanceTribal herbal practitioners of Pakistan use Alternanthera sessilis (Amaranthaceae) to treat diarrhea, asthma and hypertension. ObjectiveThe current study was conducted to provide mechanistic basis for anti-spasmodic, anti- asthmatic and anti-hypertensive use of Alternanthera sessilis. Materials and methodsThe crude ethanolic extract of Alternanthera sessilis (As.Cr) and its fractions were tested in- vitro on isolated rabbit tissue preparations (i.e., jejunum, trachea, and aorta) and in-vivo in ketamin-diazepam anaesthetized normotensive rats.The responses were recorded using isotonic and isometric transducers coupled with Power Lab data acquisition system. ResultsOn isolated rabbit jejunum preparations, As.Cr exerted concentration-dependent (0.01–1.0mg/ml) spasmolytic effect and caused relaxation of K+(80mM)-induced spastic contractions. Furthermore, there was non-parallel shift in Ca++concentration response curves (CRCs) towards right at tissue bath concentrations of 0.1 and 0.3mg/ml. On isolated rabbit trachea, it relaxed carbachol (1μM)- and K+(80mM)-induced contractions at respective tissue bath concentrations of 5.0 and 1.0mg/ml. On isolated rabbit aorta, it also demonstrated relaxant effect on phenylephrine (1μM)- and K+(80mM)-induced contractions at tissue bath concentrations of 5.0 and 3.0mg/ml respectively. These findings were found to be comparable with verapamil, a reference Ca++channel blocker (CCB). The solvent-solvents fractionation revealed domination of spasmolytic effects in dichloromethane fraction as compared to aqueous fraction. Intravenous administration of As.Cr decreased mean arterial blood pressure, systolic blood pressure and diastolic blood pressure of ketamine-diazepam anaesthetized normotensive albino rats dose-dependently, at dose range of 1–10mg/kg. ConclusionOur results reflected presence of Ca++ channel blocking (CCB) activity in As.Cr, thus rationalizing medicinal use of Alternanthera sessilis in diarrhea, asthma and hypertension.

Measurement Instruments and Software Used in Biotribology Research Laboratory

Abstract Precision measurements of friction processes have a key role in a variety of industrial processes. The emergence of fine electronic circuit techniques greatly expands capabilities of control. There are some difficulties for their full implementation today, especially when it regards the accuracy and frequency of measurements. The motion-measuring method in real-time system is considered in this article, paying special attention to increased accuracy. This method is based on rapid analog digital converter (ADC), transmission program and digital signal processor (DSP) algorithms. Description of laboratory devices is included: Tribal-T and universal friction machine (MTU-01) designed for “Pin on disc” tests. Great emphasis is placed on the usability of accelerometers. The present study examined the collected data via laboratory system for data acquisition and control, and processing it in the laboratory of Biotribology. Laboratory supervisory control and data acquisition (SCADA) algorithms is described below. Task of regulation is not considered. This paper describes only methods of automatic control theory to analyze the frictional quality.