The article presents a description and some illustrative results of the application of two optimization models for a two-component nuclear energy system consisting of thermal and fast reactors in a closed nuclear fuel cycle. These models correspond to two possible options of developing Russian nuclear energy system, which are discussed in the expert community: (1) thermal and fast reactors utilizing uranium and mixed oxide fuel, (2) thermal reactors utilizing uranium oxide fuel and fast reactors utilizing mixed nitride uranium-plutonium fuel. The optimization models elaborated using the IAEA MESSAGE energy planning tool make it possible not only to optimize the nuclear energy system structure according to the economic criterion, taking into account resource and infrastructural constraints, but also to be used as a basis for developing multi-objective, stochastic and robust optimization models of a two-component nuclear energy system. These models were elaborated in full compliance with the recommendations of the IAEA’s PESS and INPRO sections, regarding the specification of nuclear energy systems in MESSAGE. The study is based on publications of experts from NRC “Kurchatov Institute”, JSC “SSC RF-IPPE”, ITCP “Proryv”, JSC “NIKIET”. The presented results demonstrate the characteristic structural features of a two-component nuclear energy system for conservative assumptions in order to illustrate the capabilities of the developed optimization models. Consideration is also given to the economic feasibility of a technologically diversified nuclear energy structure providing the possibility of forming on its base a robust system in the future. It has been demonstrated that given the current uncertainties in the costs of nuclear fuel cycle services and reactor technologies, it is impossible at the moment to make a reasonable conclusion regarding the greatest attractiveness of a particular option in terms of the economic performance.