This paper examines how nanoparticle aggregation and a consistent magnetic field influence the peristaltic movement of a dissipative nanofluid, which is caused by the sinusoidal deformation of the boundary. The viscosity of TiO2/H2O nanofluids is accurately determined by the Krieger-Dougherty model with nanoparticle aggregation, while thermal conductivity (TC) is estimated through the Bruggeman model. The set of governing equations are modeled in a fixed frame by utilizing the conservation laws of energy, mass and momentum. Galilean transformation is utilized to transform the system of equations into a wave frame, which is then converted into a dimensionless form. The assumption of a small Reynolds number and long wavelength serve to further simplify the set of equations, which are subsequently addressed through the implementation of the differential quadrature method (DQM), a highly effective numerical technique. Quantities of interest, namely velocity, pressure gradient, temperature, trapping phenomena, heat transfer, and volumetric entropy generation are analyzed across a range of physical parameters, including the solid volume fraction (Φ=0.01−0.04), Eckert number (Ec=0.0−0.1), Hartman number (Mh=0.2−2.2), Grashof number (Gr=1.0−3.0) and temperature ratio parameter (θd=0.5−2.5). A comparative analysis is conducted between the scenario involving aggregation and the one without aggregation. It is observed that nanoparticle aggregation significantly alters these quantities.