The paleo-continental reconstruction of Asia during the Permian–Triassic boundary indicates major tectonic readjustments between multiple continental blocks in the north of North China Craton (NCC) due to complex plate subduction system(s). One of the major consequences was the closure of the Paleo-Asian Ocean. In a similar time frame, Proto-Japan was also evolving through plate-subduction with the opening of the Maizuru back-arc basin. The spectacular linear near-continuous belt of the Maizuru Terrain in the Inner Zone of Southwest Japan holds the rock record of the opening of the back-arc basin, sediment-fill in this basin culminating into closure-related pulsative debris flow deposits (i.e. the Tonoshiki Formation). However, the exact deformation mechanism(s), paleo-stress regime, their mesoscopic to microscopic rock record, and exact timing hold the keys to connecting the closure event of the Maizuru back-arc basin and the possible tectonics, in particular the closure of the PAO in Asia. With this aim, we report here the micro- to meso-structural geological records of rock units of the Maizuru Terrane which indicate evidence of (1) pre-depositional hydrofracturing, (2) extensive syn-lithification fracture-vein formation due to (3) broad WNW-ESE to E-W compressional paleostress regime using the fracture-vein analysis, (4) deformational e-twin development with the dominance of Type II twin indicating a maximum temperature of 300 °C with no evidence of overprinting. This brittle deformation affected all the lithounits of the Maizuru back-arc basin but not the overlying units deposited after the basin closure. New U-Pb detrital zircon age data of the rocks belonging to the Maizuru Group and also the overlying Fukumoto Formation fixes the age of the above-mentioned deformation event at ∼ 250 Ma. All these data help to assess the possible paleo-position of Proto-Japan and a clear tectonic scenario between the NCC, the Central Asian Orogenic Belt, and the Khanka-Jiamusi Massif in East Asia.