Individual Tree Crown Delineation Research Articles

Extraction of Information about Individual Trees from High-Spatial-Resolution UAV-Acquired Images of an Orchard

The extraction of information about individual trees is essential to supporting the growing of fruit in orchard management. Data acquired from spectral sensors mounted on unmanned aerial vehicles (UAVs) have very high spatial and temporal resolution. However, an efficient and reliable method for extracting information about individual trees with irregular tree-crown shapes and a complicated background is lacking. In this study, we developed and tested the performance of an approach, based on UAV imagery, to extracting information about individual trees in an orchard with a complicated background that includes apple trees (Plot 1) and pear trees (Plot 2). The workflow involves the construction of a digital orthophoto map (DOM), digital surface models (DSMs), and digital terrain models (DTMs) using the Structure from Motion (SfM) and Multi-View Stereo (MVS) approaches, as well as the calculation of the Excess Green minus Excess Red Index (ExGR) and the selection of various thresholds. Furthermore, a local-maxima filter method and marker-controlled watershed segmentation were used for the detection and delineation, respectively, of individual trees. The accuracy of the proposed method was evaluated by comparing its results with manual estimates of the numbers of trees and the areas and diameters of tree-crowns, all three of which parameters were obtained from the DOM. The results of the proposed method are in good agreement with these manual estimates: The F-scores for the estimated numbers of individual trees were 99.0% and 99.3% in Plot 1 and Plot 2, respectively, while the Producer’s Accuracy (PA) and User’s Accuracy (UA) for the delineation of individual tree-crowns were above 95% for both of the plots. For the area of individual tree-crowns, root-mean-square error (RMSE) values of 0.72 m2 and 0.48 m2 were obtained for Plot 1 and Plot 2, respectively, while for the diameter of individual tree-crowns, RMSE values of 0.39 m and 0.26 m were obtained for Plot 1 (339 trees correctly identified) and Plot 2 (203 trees correctly identified), respectively. Both the areas and diameters of individual tree-crowns were overestimated to varying degrees.

Lidar-Derived Tree Crown Parameters: Are They New Variables Explaining Local Birch (Betula sp.) Pollen Concentrations?

Birch trees are abundant in central and northern Europe and are dominant trees in broadleaved forests. Birches are pioneer trees that produce large quantities of allergenic pollen efficiently dispersed by wind. The pollen load level depends on the sizes and locations of pollen sources, which are important for pollen forecasting models; however, very limited work has been done on this topic in comparison to research on anthropogenic air pollutants. Therefore, we used highly accurate aerial laser scanning (Light Detection and Ranging—LiDAR) data to estimate the size and location of birch pollen sources in 3-dimensional space and to determine their influence on the pollen concentration in Poznań, Poland. LiDAR data were acquired in May 2012. LiDAR point clouds were clipped to birch individuals (mapped in 2012–2014 and in 2019), normalised, filtered, and individual tree crowns higher than 5 m were delineated. Then, the crown surface and volume were calculated and aggregated according to wind direction up to 2 km from the pollen trap. Consistent with LIDAR data, hourly airborne pollen measurements (performed using a Hirst-type, 7-day volumetric trap), wind speed and direction data were obtained in April 2012. We delineated 18,740 birch trees, with an average density of 14.9/0.01 km2, in the study area. The total birch crown surface in the 500–1500 m buffer from the pollen trap was significantly correlated with the pollen concentration aggregated by the wind direction (r = 0.728, p = 0.04). The individual tree crown delineation performed well (r2 ≥ 0.89), but overestimations were observed at high birch densities (> 30 trees/plot). We showed that trees outside forests substantially contribute to the total pollen pool. We suggest that including the vertical dimension and the trees outside the forest in pollen source maps have the potential to improve the quality of pollen forecasting models.

Individual Tree Crown Delineation Using Multispectral LiDAR Data.

In this study, multispectral Light Detection and Ranging (LiDAR) data were utilized to improve delineation of individual tree crowns (ITC) as an important step in individual tree analysis. A framework to integrate spectral and height information for ITC delineation was proposed, and the multi-scale algorithm for treetop detection developed in one of our previous studies was improved. In addition, an advanced region-based segmentation method that used detected treetops as seeds was proposed for segmentation of individual crowns based on their spectral, contextual, and height information. The proposed methods were validated with data acquired using Teledyne Optech’s Titan LiDAR sensor. The sensor was operated at three wavelengths (1550 nm, 1064 nm, and 532 nm) within a study area located in the city of Toronto, ON, Canada. The proposed method achieved 80% accuracy, compared with manual delineation of crowns, considering both matched and partially matched crowns, which was 12% higher than that obtained by the earlier marker-controlled watershed (MCW) segmentation technique. Furthermore, the results showed that the integration of spectral and height information improved ITC delineation using either the proposed framework or MCW segmentation, compared with using either spectral or height information individually.

A Weighted SVM-Based Approach to Tree Species Classification at Individual Tree Crown Level Using LiDAR Data

Tree species classification at individual tree crowns (ITCs) level, using remote-sensing data, requires the availability of a sufficient number of reliable reference samples (i.e., training samples) to be used in the learning phase of the classifier. The classification performance of the tree species is mainly affected by two main issues: (i) an imbalanced distribution of the tree species classes, and (ii) the presence of unreliable samples due to field collection errors, coordinate misalignments, and ITCs delineation errors. To address these problems, in this paper, we present a weighted Support Vector Machine (wSVM)-based approach for the detection of tree species at ITC level. The proposed approach initially extracts (i) different weights associated to different classes of tree species, to mitigate the effect of the imbalanced distribution of the classes; and (ii) different weights associated to different training samples according to their importance for the classification problem, to reduce the effect of unreliable samples. Then, in order to exploit different weights in the learning phase of the classifier a wSVM algorithm is used. The features to characterize the tree species at ITC level are extracted from both the elevation and intensity of airborne light detection and ranging (LiDAR) data. Experimental results obtained on two study areas located in the Italian Alps show the effectiveness of the proposed approach.

Predicting Growing Stock Volume of Eucalyptus Plantations Using 3-D Point Clouds Derived from UAV Imagery and ALS Data

Estimating forest inventory variables is important in monitoring forest resources and mitigating climate change. In this respect, forest managers require flexible, non-destructive methods for estimating volume and biomass. High-resolution and low-cost remote sensing data are increasingly available to measure three-dimensional (3D) canopy structure and to model forest structural attributes. The main objective of this study was to evaluate and compare the individual tree volume estimates derived from high-density point clouds obtained from airborne laser scanning (ALS) and digital aerial photogrammetry (DAP) in Eucalyptus spp. plantations. Object-based image analysis (OBIA) techniques were applied for individual tree crown (ITC) delineation. The ITC algorithm applied correctly detected and delineated 199 trees from ALS-derived data, while 192 trees were correctly identified using DAP-based point clouds acquired from Unmanned Aerial Vehicles (UAV), representing accuracy levels of respectively 62% and 60%. Addressing volume modelling, non-linear regression fit based on individual tree height and individual crown area derived from the ITC provided the following results: Model Efficiency (Mef) = 0.43 and 0.46, Root Mean Square Error (RMSE) = 0.030 m3 and 0.026 m3, rRMSE = 20.31% and 19.97%, and an approximately unbiased results (0.025 m3 and 0.0004 m3) using DAP and ALS-based estimations, respectively. No significant difference was found between the observed value (field data) and volume estimation from ALS and DAP (p-value from t-test statistic = 0.99 and 0.98, respectively). The proposed approaches could also be used to estimate basal area or biomass stocks in Eucalyptus spp. plantations.

An Operational Workflow of Deciduous-Dominated Forest Species Classification: Crown Delineation, Gap Elimination, and Object-Based Classification

Recent advances in remote sensing technology provide sufficient spatial detail to achieve species-level classification over large vegetative ecosystems. In deciduous-dominated forests, however, as tree species diversity and forest structural diversity increase, the frequency of spectral overlap between species also increases and our ability to classify tree species significantly decreases. This study proposes an operational workflow of individual tree-based species classification for a temperate, mixed deciduous forest using three-seasonal WorldView images, involving three steps of individual tree crown (ITC) delineation, non-forest gap elimination, and object-based classification. The process of species classification started with ITC delineation using the spectral angle segmentation algorithm, followed by object-based random forest classifications. A total of 672 trees was located along three triangular transects for training and validation. For single-season images, the late-spring, mid-summer, and early-fall images achieve the overall accuracies of 0.46, 0.42, and 0.35, respectively. Combining the spectral information of the early-spring, mid-summer, and early-fall images increases the overall accuracy of classification to 0.79. However, further adding the late-fall image to separate deciduous and coniferous trees as an extra step was not successful. Compared to traditional four-band (Blue, Green, Red, Near-Infrared) images, the four additional bands of WorldView images (i.e., Coastal, Yellow, Red Edge, and Near-Infrared2) contribute to the species classification greatly (OA: 0.79 vs. 0.53). This study gains insights into the contribution of the additional spectral bands and multi-seasonal images to distinguishing species with seemingly high degrees of spectral overlap.

A hybrid method for segmenting individual trees from airborne lidar data

Segmentation of individual trees from airborne lidar data uses either the point cloud directly or canopy height models (CHMs) derived from the point cloud. Point-based segmentation is able to detect understorey trees but is sensitive to the point density and often demands a high overhead cost of computing. Conversely, CHM-based segmentation can be easily implemented but it is impractical for the detection of understorey trees. To identify highly accurate treetops as well as understorey trees, this paper presents a hybrid method by modifying a CHM-based individual tree crown delineation (ITCD) algorithm and integrating it into a point-based algorithm. A multiscale local maxima (LM) algorithm is developed to improve the accuracy of LM obtained from CHMs in different spatial resolutions. The improved LM are used as seeds to segment the lidar point cloud into individual trees. For each tree, histogram analysis is applied to investigate the presence of understorey trees. Field measurements of tree heights and crown widths are used as ground truth to evaluate how well the proposed method is performing. The mean errors of tree heights and crown widths are 0.147 m and −0.004 m, respectively. The proposed method is also compared with five conventional methods of individual tree segmentation, namely ITCD, fixed window local maxima, Popescu and Wynne’s local maxima, variable area local maxima, and Li’s point-based segmentation. The comparison results indicate that the proposed hybrid method outperforms the conventional methods in terms of detection rate, omission error, commission error, mean absolute error of tree heights and root-mean-squared-error of tree heights.

ARBOR: A new framework for assessing the accuracy of individual tree crown delineation from remotely-sensed data

To assess the accuracy of individual tree crown (ITC) delineation techniques the same tree needs to be identified in two different datasets, for example, ground reference (GR) data and crowns delineated from LiDAR. Many studies use arbitrary metrics or simple linear-distance thresholds to match trees in different datasets without quantifying the level of agreement. For example, successful match-pairing is often claimed where two data points, representing the same tree in different datasets, are located within 5 m of one another. Such simple measures are inadequate for representing the multi-variate nature of ITC delineations and generate misleading measures of delineation accuracy. In this study, we develop a new framework for objectively quantifying the agreement between GR and remotely-sensed tree datasets: the Accuracy of Remotely-sensed Biophysical Observation and Retrieval (ARBOR) framework. Using common biophysical properties of ITC delineated trees (location, height and crown area), trees represented in different data sets were modelled as overlapping Gaussian curves to facilitate a more comprehensive assessment of the level of agreement. Extensive testing quantified the limitations of some frequently used match-pairing methods, in particular, the Hausdorff distance algorithm. We demonstrate that within the ARBOR framework, the Hungarian combinatorial optimisation algorithm improves the match between datasets, while the Jaccard similarity coefficient is effective for measuring the correspondence between the matched data populations. The ARBOR framework was applied to GR and remotely-sensed tree data from a woodland study site to demonstrate how ARBOR can identify the optimum ITC delineation technique, out of four different methods tested, based on two measures of statistical accuracy. Using ARBOR will limit further reliance on arbitrary thresholds as it provides an objective approach for quantifying accuracy in the development and application of ITC delineation algorithms.

A Comparative Assessment of the Performance of Individual Tree Crowns Delineation Algorithms from ALS Data in Tropical Forests

Tropical forest canopies are comprised of tree crowns of multiple species varying in shape and height, and ground inventories do not usually reliably describe their structure. Airborne laser scanning data can be used to characterize these individual crowns, but analytical tools developed for boreal or temperate forests may require to be adjusted before they can be applied to tropical environments. Therefore, we compared results from six different segmentation methods applied to six plots (39 ha) from a study site in French Guiana. We measured the overlap of automatically segmented crowns projection with selected crowns manually delineated on high-resolution photography. We also evaluated the goodness of fit following automatic matching with field inventory data using a model linking tree diameter to tree crown width. The different methods tested in this benchmark segmented highly different numbers of crowns having different characteristics. Segmentation methods based on the point cloud (AMS3D and Graph-Cut) globally outperformed methods based on the Canopy Height Models, especially for small crowns; the AMS3D method outperformed the other methods tested for the overlap analysis, and AMS3D and Graph-Cut performed the best for the automatic matching validation. Nevertheless, other methods based on the Canopy Height Model performed better for very large emergent crowns. The dense foliage of tropical moist forests prevents sufficient point densities in the understory to segment subcanopy trees accurately, regardless of the segmentation method.

Tree species classification in tropical forests using visible to shortwave infrared WorldView-3 images and texture analysis

Tropical forest conservation and management can significantly benefit from information about the spatial distribution of tree species. Very-high resolution (VHR) spaceborne platforms have been hailed as a promising technology for mapping tree species over broad spatial extents. WorldView-3, the most advanced VHR sensor, provides spectral data in 16 bands covering the visible to near-infrared (VNIR, 400–1040 nm) and shortwave-infrared (SWIR, 1210–2365 nm) wavelength ranges. It also collects images at unprecedented levels of details using a panchromatic band with 0.3-m of spatial resolution. However, the potential of WorldView-3 at its full spectral and spatial resolution for tropical tree species classification remains unknown. In this study, we performed a comprehensive assessment of WorldView-3 images acquired in the dry and wet seasons for tree species discrimination in tropical semi-deciduous forests. Classification experiments were performed using VNIR individually and combined with SWIR channels. To take advantage of the sub-metric resolution of the panchromatic band for classification, we applied an individual tree crown (ITC)-based approach that employed pan-sharpened VNIR bands and gray level co-occurrence matrix texture features. We determined whether the combination of images from the two annual seasons improves the classification accuracy. Finally, we investigated which plant traits influenced species detection. The new SWIR sensing capabilities of WorldView-3 increased the average producer’s accuracy up to 7.8%, by enabling the detection of non-photosynthetic vegetation within ITCs. The combination of VNIR bands from the two annual seasons did not improve the classification results when compared to the results obtained using images from each season individually. The use of VNIR bands at their original 1.2-m spatial resolution yielded average producer’s accuracies of 43.1 ± 3.1% and 38.8 ± 3% in the wet and dry seasons, respectively. The ITC-based approach improved the accuracy to 70 ± 8% in the wet and 68.4 ± 7.4% in the dry season. Texture analysis of the panchromatic band enabled the detection of species-specific differences in crown structure, which improved species detection. The use of texture analysis, pan-sharpening, and ITC delineation is a potential approach to perform tree species classification in tropical forests with WorldView-3 satellite images.

Individual tree crown delineation and tree species classification with hyperspectral and LiDAR data.

An international data science challenge, called National Ecological Observatory Network—National Institute of Standards and Technology data science evaluation, was set up in autumn 2017 with the goal to improve the use of remote sensing data in ecological applications. The competition was divided into three tasks: (1) individual tree crown (ITC) delineation, for identifying the location and size of individual trees; (2) alignment between field surveyed trees and ITCs delineated on remote sensing data; and (3) tree species classification. In this paper, the methods and results of team Fondazione Edmund Mach (FEM) are presented. The ITC delineation (Task 1 of the challenge) was done using a region growing method applied to a near-infrared band of the hyperspectral images. The optimization of the parameters of the delineation algorithm was done in a supervised way on the basis of the Jaccard score using the training set provided by the organizers. The alignment (Task 2) between the delineated ITCs and the field surveyed trees was done using the Euclidean distance among the position, the height, and the crown radius of the ITCs and the field surveyed trees. The classification (Task 3) was performed using a support vector machine classifier applied to a selection of the hyperspectral bands and the canopy height model. The selection of the bands was done using the sequential forward floating selection method and the Jeffries Matusita distance. The results of the three tasks were very promising: team FEM ranked first in the data science competition in Task 1 and 2, and second in Task 3. The Jaccard score of the delineated crowns was 0.3402, and the results showed that the proposed approach delineated both small and large crowns. The alignment was correctly done for all the test samples. The classification results were good (overall accuracy of 88.1%, kappa accuracy of 75.7%, and mean class accuracy of 61.5%), although the accuracy was biased toward the most represented species.

Individual Tree Detection and Crown Delineation with 3D Information from Multi-view Satellite Images

Individual tree detection and crown delineation (<small>ITDD</small>) are critical in forest inventory management and remote sensing based forest surveys are largely carried out through satellite images. However, most of these surveys only use 2D spectral information which normally has not enough clues for <small>ITDD</small>. To fully explore the satellite images, we propose a <small>ITDD</small> method using the orthophoto and digital surface model (<small>DSM</small>) derived from the multi-view satellite data. Our algorithm utilizes the top-hat morphological operation to efficiently extract the local maxima from <small>DSM</small> as treetops, and then feed them to a modified superpixel segmentation that combines both 2D and 3D information for tree crown delineation. In subsequent steps, our method incorporates the biological characteristics of the crowns through plant allometric equation to falsify potential outliers. Experiments against manually marked tree plots on three representative regions have demonstrated promising results – the best overall detection accuracy can be 89%.

Improving Individual Tree Crown Delineation and Attributes Estimation of Tropical Forests Using Airborne LiDAR Data

Individual tree crown (ITC) segmentation is an approach to isolate individual tree from the background vegetation and delineate precisely the crown boundaries for forest management and inventory purposes. ITC detection and delineation have been commonly generated from canopy height model (CHM) derived from light detection and ranging (LiDAR) data. Existing ITC segmentation methods, however, are limited in their efficiency for characterizing closed canopies, especially in tropical forests, due to the overlapping structure and irregular shape of tree crowns. Furthermore, the potential of 3-dimensional (3D) LiDAR data is not fully realized by existing CHM-based methods. Thus, the aim of this study was to develop an efficient framework for ITC segmentation in tropical forests using LiDAR-derived CHM and 3D point cloud data in order to accurately estimate tree attributes such as the tree height, mean crown width and aboveground biomass (AGB). The proposed framework entails five major steps: (1) automatically identifying dominant tree crowns by implementing semi-variogram statistics and morphological analysis; (2) generating initial tree segments using a watershed algorithm based on mathematical morphology; (3) identifying “problematic” segments based on predetermined set of rules; (4) tuning the problematic segments using a modified distance-based algorithm (DBA); and (5) segmenting and counting the number of individual trees based on the 3D LiDAR point clouds within each of the identified segment. This approach was developed in a way such that the 3D LiDAR points were only examined on problematic segments identified for further evaluations. 209 reference trees with diameter at breast height (DBH) ≥ 10 cm were selected in the field in two study areas in order to validate ITC detection and delineation results of the proposed framework. We computed tree crown metrics (e.g., maximum crown height and mean crown width) to estimate aboveground biomass (AGB) at tree level using previously published allometric equations. Accuracy assessment was performed to calculate percentage of correctly detected trees, omission and commission errors. Our method correctly identified individual tree crowns with detection accuracy exceeding 80 percent at both forest sites. Also, our results showed high agreement (R2 > 0.64) in terms of AGB estimates using 3D LiDAR metrics and variables measured in the field, for both sites. The findings from our study demonstrate the efficacy of the proposed framework in delineating tree crowns, even in high canopy density areas such as tropical rainforests, where, usually the traditional algorithms are limited in their performances. Moreover, the high tree delineation accuracy in the two study areas emphasizes the potential robustness and transferability of our approach to other densely forested areas across the globe.

Detection of individual trees in urban alignment from airborne data and contextual information: A marked point process approach

With the current expansion of cities, urban trees have an important role for preserving the health of its inhabitants. With their evapotranspiration, they reduce the urban heat island phenomenon, by trapping CO2 emission, improve air quality. In particular, street trees or alignment trees, create shade on the road network, are structuring elements of the cities and decorate the roads. Street trees are also subject to specific conditions as they have little space for growth, are pruned and can be affected by the spread of diseases in single-species plantations. Thus, their detection, identification and monitoring are necessary. In this study, an approach is proposed for mapping these trees that are characteristic of the urban environment. Three areas of the city of Toulouse in the south of France are studied. Airborne hyperspectral data and a Digital Surface Model (DSM) for high vegetation detection are used. Then, contextual information is used to identify the street trees. Indeed, Geographic Information System (GIS) data are considered to detect the vegetation canopies close to the streets. Afterwards, individual street tree crown delineation is carried out by modeling the discriminative contextual features of individual street trees (hypotheses of small angle between the trees and similar heights) based on Marked Point Process (MPP). Compared to a baseline individual tree crown delineation method based on region growing, our method logically provides the best results with F-score values of 91%, 75% and 85% against 70%, 41% and 20% for the three studied areas respectively. Our approach mainly succeeds in identifying the street trees. In addition, the contribution of the angle, the height and the GIS data in the street tree mapping has been studied. The results encourage the use of the angle, the height and the GIS data together. However, with only the angle and the height, the results are similar to those obtained with the inclusion of the GIS data for the first and the second study cases with F-score values of 88%, 79% and 62% against 91%, 75% and 85% for the three study cases respectively. Finally, it is shown that the GIS data only is not sufficient.

Individual tree crown delineation in a highly diverse tropical forest using very high resolution satellite images

Mapping tropical tree species at landscape scales to provide information for ecologists and forest managers is a new challenge for the remote sensing community. For this purpose, detection and delineation of individual tree crowns (ITCs) is a prerequisite. Here, we present a new method of automatic tree crown delineation based only on very high resolution images from WorldView-2 satellite and apply it to a region of the Atlantic rain forest with highly heterogeneous tropical canopy cover – the Santa Genebra forest reserve in Brazil. The method works in successive steps that involve pre-processing, selection of forested pixels, enhancement of borders, detection of pixels in the crown borders, correction of shade in large trees and, finally, segmentation of the tree crowns. Principally, the method uses four techniques: rolling ball algorithm and mathematical morphological operations to enhance the crown borders and ease the extraction of tree crowns; bimodal distribution parameters estimations to identify the shaded pixels in the gaps, borders, and crowns; and focal statistics for the analysis of neighbouring pixels. Crown detection is validated by comparing the delineated ITCs with a sample of ITCs delineated manually by visual interpretation. In addition, to test if the spectra of individual species are conserved in the automatic delineated crowns, we compare the accuracy of species prediction with automatic and manual delineated crowns with known species. We find that our method permits detection of up to 80% of ITCs. The seven species with over 10 crowns identified in the field were mapped with reasonable accuracy (30.5–96%) given that only WorldView-2 bands and texture features were used. Similar classification accuracies were obtained using both automatic and manual delineation, thereby confirming that species’ spectral responses are preserved in the automatic method and thus permitting the recognition of species at the landscape scale. Our method might support tropical forest applications, such as mapping species and canopy characteristics at the landscape scale.

Comparison of ALS- and UAV(SfM)-derived high-density point clouds for individual tree detection in Eucalyptus plantations

ABSTRACTHighly accurate, rapid forest inventory techniques are needed to enable forest managers to address the increasing demand for sustainable forestry. In the last two decades, Airborne Laser Scanning (ALS) and Terrestrial Laser Scanning have become internationally established as forest mapping and monitoring methods. However, recent advances in sensors and in image processing – particularly Structure from Motion (SfM) technology – have also enabled the extraction of dense point clouds from images obtained by Digital Aerial Photography (DAP). DAP is cheaper than ALS, especially when the systems are mounted on small unmanned aerial vehicles (UAVs), and the density of the point cloud can easily reach the levels yielded by ALS devices. The main objective of this study was to evaluate and compare the usefulness of ALS-derived and UAV(SfM)-derived high-density point clouds for detecting and measuring individual tree height in Eucalyptus spp. plantations established on complex terrain. A total of 325 reference trees were measured and located in 6 square plots (400 m2). The individual tree crown (ITC) delineation algorithm detected 311 from the ALS-derived data and 259 trees from the UAV(SfM)-derived data, representing accuracy levels of, respectively, 96% and 80%. The results suggest that at plot level, UAV(SfM)-generated point clouds are as good as ALS-derived point clouds for estimating individual tree height. Furthermore, analysis of the differences in digital elevation models at landscape level showed that the elevations of the UAV(SfM)-derived terrain surfaces were slightly higher than the ALS-derived surfaces (mean difference, 1.14 m and standard deviation, 1.93 m). Finally, we discuss how non-optimal UAV-image-acquisition conditions and slope terrain affect the ITC delineation process.

Correction pit free canopy height model derived from LiDAR data for the broad leaf tropical forest

The accuracy of forest inventory information, such as tree height estimation and individual tree crown delineation depending on the extraction of Canopy Height Model (CHM) that represent the absolute tree height of vegetation. However, uncertainties variation of the CHM known as a pit, negatively influence the biophysical measurements. These occur when the laser beam penetrates the part of the leaf and the branch before produces the first return to represent the surface of canopies. Despite of that, multiple laser beam from the different flight line cause a variation of the tree heights. To reduce the error of CHM, this work applied pit free algorithm CHM for broad leaf tropical forests. The results shown that, the pit free CHM produces a good correlation with the ground data with R2 0.86, meanwhile, the standard CHM with R2 0.78. For the accuracy assessment, Accuracy Index (AI) has been used to calculate the error of commission and omission for tree detection. The analysis proved that the pits free CHM improved the accuracy of tree detection with the total Accuracy Index value 69% and standard CHM recorded 52.3%.

Adaptive stopping criterion for top-down segmentation of ALS point clouds in temperate coniferous forests

The development of new approaches to individual tree crown delineation for forest inventory and management is an important area of ongoing research. The increasing availability of high density ALS (Airborne Laser Scanning) point clouds offers the opportunity to segment the individual tree crowns and deduce their geometric properties with a high level of accuracy. Top-down segmentation methods such as normalized cut are established approaches for delineation of single trees in ALS point clouds. However, overlapping crowns and branches of nearby trees frequently cause over- and under-segmentation due to the difficulty of defining a single criterion for stopping the partitioning process. In this work, we investigate an adaptive stopping criterion based on the visual appearance of trees within the point clouds. We focus on coniferous trees due to their well-defined crown shapes in comparison to deciduous trees. This approach is based on modeling the coniferous tree crowns with elliptic paraboloids to infer whether a given 3D scene contains exactly one or more than one tree. For each processed scene, candidate tree peaks are generated from local maxima found within the point cloud. Next, paraboloids are fitted at the peaks using a random sample consensus procedure and classified based on their geometric properties. The decision to stop or continue partitioning is determined by finding a set of non-overlapping paraboloids. Experiments were performed on three plots from the Bavarian Forest National Park in Germany. Based on validation data from the field inventory, results show that our approach improves the segmentation quality by up to 10% across plots with different properties, such as average tree height and density. This indicates that the new adaptive stopping criterion for normalized cut segmentation is capable of delineating tree crowns more accurately than a static stopping criterion based on a constant Ncut threshold value.

CROWN-LEVEL TREE SPECIES CLASSIFICATION USING INTEGRATED AIRBORNE HYPERSPECTRAL AND LIDAR REMOTE SENSING DATA

Abstract. Mapping tree species is essential for sustainable planning as well as to improve our understanding of the role of different trees as different ecological service. However, crown-level tree species automatic classification is a challenging task due to the spectral similarity among diversified tree species, fine-scale spatial variation, shadow, and underlying objects within a crown. Advanced remote sensing data such as airborne Light Detection and Ranging (LiDAR) and hyperspectral imagery offer a great potential opportunity to derive crown spectral, structure and canopy physiological information at the individual crown scale, which can be useful for mapping tree species. In this paper, an innovative approach was developed for tree species classification at the crown level. The method utilized LiDAR data for individual tree crown delineation and morphological structure extraction, and Compact Airborne Spectrographic Imager (CASI) hyperspectral imagery for pure crown-scale spectral extraction. Specifically, four steps were include: 1) A weighted mean filtering method was developed to improve the accuracy of the smoothed Canopy Height Model (CHM) derived from LiDAR data; 2) The marker-controlled watershed segmentation algorithm was, therefore, also employed to delineate the tree-level canopy from the CHM image in this study, and then individual tree height and tree crown were calculated according to the delineated crown; 3) Spectral features within 3 × 3 neighborhood regions centered on the treetops detected by the treetop detection algorithm were derived from the spectrally normalized CASI imagery; 4) The shape characteristics related to their crown diameters and heights were established, and different crown-level tree species were classified using the combination of spectral and shape characteristics. Analysis of results suggests that the developed classification strategy in this paper (OA = 85.12 %, Kc = 0.90) performed better than LiDAR-metrics method (OA = 79.86 %, Kc = 0.81) and spectral-metircs method (OA = 71.26, Kc = 0.69) in terms of classification accuracy, which indicated that the advanced method of data processing and sensitive feature selection are critical for improving the accuracy of crown-level tree species classification.

THE EARLY DETECTION OF THE EMERALD ASH BORER (EAB) USING MULTI-SOURCE REMOTELY SENSED DATA

Abstract. The objectives of this study were to exploit the synergy of hyperspectral imagery, Light Detection And Ranging (LiDAR) and high spatial resolution data and their synergy in the early detection of the EAB (Emerald Ash Borer) presence in trees within urban areas and to develop a framework to combine information extracted from multiple data sources. To achieve these, an object-oriented framework was developed to combine information derived from available data sets to characterize ash trees. Within this framework, an advanced individual tree delineation method was developed to delineate individual trees using the combined high-spatial resolution worldview-3 imagery was used together with LiDAR data. Individual trees were then classified to ash and non-ash trees using spectral and spatial information. In order to characterize the health state of individual ash trees, leaves from ash trees with various health states were sampled and measured using a field spectrometer. Based on the field measurements, the best indices that sensitive to leaf chlorophyll content were selected. The developed framework and methods were tested using worldview-3, airborne LiDAR data over the Keele campus of York University Toronto Canada. Satisfactory results in terms of individual tree crown delineation, ash tree identification and characterization of the health state of individual ash trees. Quantitative evaluations is being carried out.